CsaV3_7G031130 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_7G031130
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Sm-like protein LSM2
Location	chr7: 19712401 .. 19714548 (-)
RNA-Seq Expression	CsaV3_7G031130
Synteny	CsaV3_7G031130

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TAGAACCCTAAAACTGTTCGTAAGACAAAACCGTTCTTTCCGCCAGAAAGATTTCATTTCTGCCAACGCGCCACCGTAACCATCGGTTTTCACTCAAGGTACACTCCTTTATCTATCTTTCACAACCACTATCTCTCTTTCAATTTCTTACTCAGATCCGTTAGTTCTTGATATATTCACTTTTTTAGCGGTTCGTCTTTTGTAAAACCCATTCCTTATTTGTTATGGCATTTTGATATTTCATAATACTGTGAAGATCAAATGTTTTGGGTATGATCTCTAAACTCTTGCCTAGTGTTTGATTACCTCGTATTTCTTGTTGTTCTTGCACTTTCTTTCATTTATTTTCTAACCTTGACTGCATTTCCCATTTTCATTGTCTTGCATTTTTGTCCATTCAAAACCACTCACAGATGAATTCGGTGTTTTTTTTTTGGGGGATAATTTAGCAGGTTTTGATTATAATGTATTAGATTTATATATAGACACTGGACTTCAACTGGTGGCATGCTTCGATGGAGTAAATAATGATTAATAAATTTATGCATTTAACACGATGATAATTTGCCATAATATGTATCGTTTACAAACAATTTATTTTAACGCTATAATAATTCATTAAAACTGAAAGTGTTTTTTCTAAGATCATCTATTGTACAGATATAGATTATCTTTTATTCTCTAAATCCAAAAAGGCGTGTTTTCCCAATTGATAGCTCGGACGACATTTCAACCTTCAACAGTCGTTGATCTTCACGCGTAGATAGACTGAAGGCTATCACCTCAAACCTCTAGTGAAAATGGTAACTCCATTTACATACTGGTTTCTGTCTTTTAAGTTTTCGTTACTGTTTATCTTACTTTAGGTGCTCAAGTTGTTGCTTGTTGCTTCTTTTTTTTGTTTTTTCTTCTCGTGTCTTTAACCTGGCCTTCACGGTTTTTTCAATATTTGGTTTATGTATGTGGATTTTGATTTGATTTGCGTTTTGTTTGTCAGTTGTTTTTCTCGTACTTCAAGGATTTGGTGGGCAGAGAGGTGACAGTTGAGTTGAAGAACGACCTAGCAATTAGAGGAACTCTGCATTCTGTAGATCAGTATCTCAACATCAAACTGGAAAACACCAGGGTTGTTGATCAGGAAAAATACCCTCATATGGTATCCAGACGTGTTTATATTTATGCAATATATTTGATCAATTATTTTGATTTTCTACACTTGAGGCGAGGCCAACTTTGATTTTGTTTTTCTTTGTTTACCATTTCTCATAGGCACCCCTTTTCATTTCTGCTTCTTTTGTATTAAGGTTACTTTGATTCATTTAATTAGAAGATTCTCTCTAGAGAAATAAAGATGTCTTAACCATTGAGTCATTGACATTGTTGTTGTTGTTTTTATTTGATGATTTGAAGGGGAGGGTAACGGGGTTTCTATTTGAGTTATCTTCATGTTTTCTCTTGTTCTCTTTCCATGTCCTTGCTATAGATTTCCCATATTGTAAAGAAACACCTCAATTCTTAGTTAAATTCTGAAAAGAGAAACAATTTTTTTGCAAACTACTTTATGAAGATGGTAGTGGAAAGACAGATGTTGGTTGTTGATTATTTTAGGAATGGTATAGATTCTTGTTTTTCCATGATGTTAAGTCAATTATTTCACATTTTGTCAGCTGAACATGTAATTTTTTGTTGGTGGTCATTAAACTTATGGAGTTCAAATTCTGTCTTCAGCTTTCTGTGAGAAACTGTTTCATCAGGGGATCAGTGGTGAGATATGTTCAACTTCCACCAGATGGTGTTGATGTCGAGTTGTTGCATGATGCCACCAGACGCGAGGCTCGAGGTGGCTAATGTCACTTAGTTTGTAAGTTTGCATGGAATTACATGGAAAGTATTGGAATGCAATTTTTAGCCTTCTAGTAGATGCTAAAAGAGACTAAGTTGTAAACAAATCAATAGTATGAAGTTCTTTTAGCCTTCTAACAACGTATACTTCTTTTTAAATTTGTTGAAAGTATATAGATTAGATATGGGCACTTCAAGATAAACT

mRNA sequence

ATGTTGTTTTTCTCGTACTTCAAGGATTTGGTGGGCAGAGAGGTGACAGTTGAGTTGAAGAACGACCTAGCAATTAGAGGAACTCTGCATTCTGTAGATCAGTATCTCAACATCAAACTGGAAAACACCAGGGTTGTTGATCAGGAAAAATACCCTCATATGCTTTCTGTGAGAAACTGTTTCATCAGGGGATCAGTGGTGAGATATGTTCAACTTCCACCAGATGGTGTTGATGTCGAGTTGTTGCATGATGCCACCAGACGCGAGGCTCGAGGTGGCTAA

Coding sequence (CDS)

ATGTTGTTTTTCTCGTACTTCAAGGATTTGGTGGGCAGAGAGGTGACAGTTGAGTTGAAGAACGACCTAGCAATTAGAGGAACTCTGCATTCTGTAGATCAGTATCTCAACATCAAACTGGAAAACACCAGGGTTGTTGATCAGGAAAAATACCCTCATATGCTTTCTGTGAGAAACTGTTTCATCAGGGGATCAGTGGTGAGATATGTTCAACTTCCACCAGATGGTGTTGATGTCGAGTTGTTGCATGATGCCACCAGACGCGAGGCTCGAGGTGGCTAA

Protein sequence

MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPDGVDVELLHDATRREARGG*

Homology

[Close]

BLAST of CsaV3_7G031130 vs. NCBI nr
Match: XP_004135926.1 (sm-like protein LSM2 [Cucumis sativus] >XP_031744245.1 sm-like protein LSM2 [Cucumis sativus] >KGN45137.1 hypothetical protein Csa_015899 [Cucumis sativus])

HSP 1 Score: 193.0 bits (489), Expect = 1.2e-45
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNC 60
          MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNC
Sbjct: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNC 60

Query: 61 FIRGSVVRYVQLPPDGVDVELLHDATRREARGG 94
          FIRGSVVRYVQLPPDGVDVELLHDATRREARGG
Sbjct: 61 FIRGSVVRYVQLPPDGVDVELLHDATRREARGG 93

[Close]

BLAST of CsaV3_7G031130 vs. NCBI nr
Match: KAD4584478.1 (hypothetical protein E3N88_22079 [Mikania micrantha])

HSP 1 Score: 192.6 bits (488), Expect = 1.6e-45
Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1   MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNC 60
           MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNC
Sbjct: 29  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNC 88

Query: 61  FIRGSVVRYVQLPPDGVDVELLHDATRREARGG 94
           FIRGSVVRYVQLPPDGVD+ELLHDATRREARGG
Sbjct: 89  FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 121

[Close]

BLAST of CsaV3_7G031130 vs. NCBI nr
Match: EPS69310.1 (hypothetical protein M569_05456 [Genlisea aurea])

HSP 1 Score: 192.6 bits (488), Expect = 1.6e-45
Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNC 60
          MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRV+DQEKYPHMLSVRNC
Sbjct: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVIDQEKYPHMLSVRNC 60

Query: 61 FIRGSVVRYVQLPPDGVDVELLHDATRREARGG 94
          FIRGSVVRYVQLPPDGVDVELLHDATRREARGG
Sbjct: 61 FIRGSVVRYVQLPPDGVDVELLHDATRREARGG 93

[Close]

BLAST of CsaV3_7G031130 vs. NCBI nr
Match: XP_008458018.1 (PREDICTED: sm-like protein LSM2 isoform X2 [Cucumis melo])

HSP 1 Score: 192.6 bits (488), Expect = 1.6e-45
Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNC 60
          MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNC
Sbjct: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNC 60

Query: 61 FIRGSVVRYVQLPPDGVDVELLHDATRREARGG 94
          FIRGSVVRYVQLPPDGVD+ELLHDATRREARGG
Sbjct: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 93

[Close]

BLAST of CsaV3_7G031130 vs. NCBI nr
Match: XP_008461281.1 (PREDICTED: sm-like protein LSM2 [Cucumis melo] >XP_021898297.1 LOW QUALITY PROTEIN: sm-like protein LSM2 [Carica papaya] >XP_026422975.1 sm-like protein LSM2 [Papaver somniferum] >XP_026453489.1 sm-like protein LSM2 [Papaver somniferum] >XP_031279939.1 sm-like protein LSM2 [Pistacia vera] >XP_031285462.1 sm-like protein LSM2 [Pistacia vera] >PIN18182.1 putative snRNP core protein [Handroanthus impetiginosus] >RZC52409.1 hypothetical protein C5167_020832 [Papaver somniferum] >RZC81286.1 hypothetical protein C5167_043834 [Papaver somniferum])

HSP 1 Score: 191.8 bits (486), Expect = 2.6e-45
Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNC 60
          MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQ+KYPHMLSVRNC
Sbjct: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60

Query: 61 FIRGSVVRYVQLPPDGVDVELLHDATRREARGG 94
          FIRGSVVRYVQLPPDGVDVELLHDATRREARGG
Sbjct: 61 FIRGSVVRYVQLPPDGVDVELLHDATRREARGG 93

[Close]

BLAST of CsaV3_7G031130 vs. ExPASy Swiss-Prot
Match: Q1H595 (Sm-like protein LSM2 OS=Arabidopsis thaliana OX=3702 GN=LSM2 PE=1 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 7.2e-46
Identity = 88/93 (94.62%), Postives = 91/93 (97.85%), Query Frame = 0


Query: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNC 60
          MLFFSYFKDLVG+EVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQ+KYPHMLSVRNC
Sbjct: 1  MLFFSYFKDLVGQEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60

Query: 61 FIRGSVVRYVQLPPDGVDVELLHDATRREARGG 94
          FIRGSVVRYVQLP DGVDV+LLHDA RREARGG
Sbjct: 61 FIRGSVVRYVQLPKDGVDVDLLHDAARREARGG 93

[Close]

BLAST of CsaV3_7G031130 vs. ExPASy Swiss-Prot
Match: Q9Y333 (U6 snRNA-associated Sm-like protein LSm2 OS=Homo sapiens OX=9606 GN=LSM2 PE=1 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 8.3e-34
Identity = 68/90 (75.56%), Postives = 77/90 (85.56%), Query Frame = 0


Query: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNC 60
          MLF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL +  V D EKYPHMLSV+NC
Sbjct: 1  MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60

Query: 61 FIRGSVVRYVQLPPDGVDVELLHDATRREA 91
          FIRGSVVRYVQLP D VD +LL DA R+EA
Sbjct: 61 FIRGSVVRYVQLPADEVDTQLLQDAARKEA 90

[Close]

BLAST of CsaV3_7G031130 vs. ExPASy Swiss-Prot
Match: O35900 (U6 snRNA-associated Sm-like protein LSm2 OS=Mus musculus OX=10090 GN=Lsm2 PE=1 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 8.3e-34
Identity = 68/90 (75.56%), Postives = 77/90 (85.56%), Query Frame = 0


Query: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNC 60
          MLF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL +  V D EKYPHMLSV+NC
Sbjct: 1  MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60

Query: 61 FIRGSVVRYVQLPPDGVDVELLHDATRREA 91
          FIRGSVVRYVQLP D VD +LL DA R+EA
Sbjct: 61 FIRGSVVRYVQLPADEVDTQLLQDAARKEA 90

[Close]

BLAST of CsaV3_7G031130 vs. ExPASy Swiss-Prot
Match: Q54TF6 (Probable U6 snRNA-associated Sm-like protein LSm2 OS=Dictyostelium discoideum OX=44689 GN=lsm2 PE=3 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 1.9e-30
Identity = 61/91 (67.03%), Postives = 78/91 (85.71%), Query Frame = 0


Query: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNC 60
          MLFFS++K LVG+E+TVELKNDL+I G L SVDQ+LNIKL++ +V +++KYP+M+SV+NC
Sbjct: 1  MLFFSFYKSLVGKEITVELKNDLSITGLLQSVDQFLNIKLKDIKVNEEDKYPYMISVKNC 60

Query: 61 FIRGSVVRYVQLPPDGVDVELLHDATRREAR 92
          FIRGSVVRYV LP + VDVE L D +R EAR
Sbjct: 61 FIRGSVVRYVHLPAEDVDVETLQDHSRLEAR 91

[Close]

BLAST of CsaV3_7G031130 vs. ExPASy Swiss-Prot
Match: P38203 (U6 snRNA-associated Sm-like protein LSm2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=LSM2 PE=1 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.6e-27
Identity = 59/89 (66.29%), Postives = 70/89 (78.65%), Query Frame = 0


Query: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNC 60
          MLFFS+FK LV +EV VELKND+ I+GTL SVDQ+LN+KL+N    D++KYPH+ SVRN 
Sbjct: 1  MLFFSFFKTLVDQEVVVELKNDIEIKGTLQSVDQFLNLKLDNISCTDEKKYPHLGSVRNI 60

Query: 61 FIRGSVVRYVQLPPDGVDVELLHDATRRE 90
          FIRGS VRYV L  + VD  LL DATRRE
Sbjct: 61 FIRGSTVRYVYLNKNMVDTNLLQDATRRE 89

[Close]

BLAST of CsaV3_7G031130 vs. ExPASy TrEMBL
Match: A0A0A0K9T1 (Sm-like protein LSM2 OS=Cucumis sativus OX=3659 GN=Csa_7G428250 PE=3 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 5.8e-46
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNC 60
          MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNC
Sbjct: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNC 60

Query: 61 FIRGSVVRYVQLPPDGVDVELLHDATRREARGG 94
          FIRGSVVRYVQLPPDGVDVELLHDATRREARGG
Sbjct: 61 FIRGSVVRYVQLPPDGVDVELLHDATRREARGG 93

[Close]

BLAST of CsaV3_7G031130 vs. ExPASy TrEMBL
Match: A0A5N6NC01 (Sm domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_22079 PE=3 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 7.5e-46
Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1   MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNC 60
           MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNC
Sbjct: 29  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNC 88

Query: 61  FIRGSVVRYVQLPPDGVDVELLHDATRREARGG 94
           FIRGSVVRYVQLPPDGVD+ELLHDATRREARGG
Sbjct: 89  FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 121

[Close]

BLAST of CsaV3_7G031130 vs. ExPASy TrEMBL
Match: S8CR98 (Sm-like protein LSM2 OS=Genlisea aurea OX=192259 GN=M569_05456 PE=3 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 7.5e-46
Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNC 60
          MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRV+DQEKYPHMLSVRNC
Sbjct: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVIDQEKYPHMLSVRNC 60

Query: 61 FIRGSVVRYVQLPPDGVDVELLHDATRREARGG 94
          FIRGSVVRYVQLPPDGVDVELLHDATRREARGG
Sbjct: 61 FIRGSVVRYVQLPPDGVDVELLHDATRREARGG 93

[Close]

BLAST of CsaV3_7G031130 vs. ExPASy TrEMBL
Match: A0A1S3C840 (Sm-like protein LSM2 OS=Cucumis melo OX=3656 GN=LOC103497556 PE=3 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 7.5e-46
Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNC 60
          MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNC
Sbjct: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNC 60

Query: 61 FIRGSVVRYVQLPPDGVDVELLHDATRREARGG 94
          FIRGSVVRYVQLPPDGVD+ELLHDATRREARGG
Sbjct: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 93

[Close]

BLAST of CsaV3_7G031130 vs. ExPASy TrEMBL
Match: A0A4Y7L7W5 (Sm-like protein LSM2 OS=Papaver somniferum OX=3469 GN=C5167_020832 PE=3 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 1.3e-45
Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNC 60
          MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQ+KYPHMLSVRNC
Sbjct: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60

Query: 61 FIRGSVVRYVQLPPDGVDVELLHDATRREARGG 94
          FIRGSVVRYVQLPPDGVDVELLHDATRREARGG
Sbjct: 61 FIRGSVVRYVQLPPDGVDVELLHDATRREARGG 93

[Close]

BLAST of CsaV3_7G031130 vs. TAIR 10
Match: AT1G03330.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 184.1 bits (466), Expect = 5.1e-47
Identity = 88/93 (94.62%), Postives = 91/93 (97.85%), Query Frame = 0


Query: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNC 60
          MLFFSYFKDLVG+EVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQ+KYPHMLSVRNC
Sbjct: 1  MLFFSYFKDLVGQEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60

Query: 61 FIRGSVVRYVQLPPDGVDVELLHDATRREARGG 94
          FIRGSVVRYVQLP DGVDV+LLHDA RREARGG
Sbjct: 61 FIRGSVVRYVQLPKDGVDVDLLHDAARREARGG 93

[Close]

BLAST of CsaV3_7G031130 vs. TAIR 10
Match: AT3G07590.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 41.6 bits (96), Expect = 4.1e-04
Identity = 24/82 (29.27%), Postives = 44/82 (53.66%), Query Frame = 0


Query: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNC 60
          M    +   L    V++ELKN   + GT+  VD  +N  L+  ++  + K P  +++ + 
Sbjct: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMSLKGKNP--VTLDHL 60

Query: 61 FIRGSVVRYVQLPPDGVDVELL 83
           +RG+ +RY  L PD +++E L
Sbjct: 61 SLRGNNIRYYIL-PDSLNLETL 79

[Close]

BLAST of CsaV3_7G031130 vs. TAIR 10
Match: AT3G07590.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 41.6 bits (96), Expect = 4.1e-04
Identity = 24/82 (29.27%), Postives = 44/82 (53.66%), Query Frame = 0


Query: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNC 60
          M    +   L    V++ELKN   + GT+  VD  +N  L+  ++  + K P  +++ + 
Sbjct: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMSLKGKNP--VTLDHL 60

Query: 61 FIRGSVVRYVQLPPDGVDVELL 83
           +RG+ +RY  L PD +++E L
Sbjct: 61 SLRGNNIRYYIL-PDSLNLETL 79

[Close]

BLAST of CsaV3_7G031130 vs. TAIR 10
Match: AT4G02840.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 41.6 bits (96), Expect = 4.1e-04
Identity = 24/82 (29.27%), Postives = 44/82 (53.66%), Query Frame = 0


Query: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNC 60
          M    +   L    V++ELKN   + GT+  VD  +N  L+  ++  + K P  +++ + 
Sbjct: 1  MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDVSMNTHLKAVKLTLKGKNP--VTLDHL 60

Query: 61 FIRGSVVRYVQLPPDGVDVELL 83
           +RG+ +RY  L PD +++E L
Sbjct: 61 SVRGNNIRYYIL-PDSLNLETL 79

[Close]

BLAST of CsaV3_7G031130 vs. TAIR 10
Match: AT3G59810.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 40.8 bits (94), Expect = 7.0e-04
Identity = 22/65 (33.85%), Postives = 35/65 (53.85%), Query Frame = 0


Query: 6  YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGS 65
          + K + GR V V+L + +  RGTL  +D Y+NI +E T      +  +     + FIRG+
Sbjct: 18 FLKSIRGRPVVVKLNSGVDYRGTLTCLDGYMNIAMEQTEEYVNGQLKNKYG--DAFIRGN 77

Query: 66 VVRYV 71
           V Y+
Sbjct: 78 NVLYI 80

The following BLAST results are available for this feature:

BLAST of CsaV3_7G031130 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004135926.1	1.2e-45	100.00	sm-like protein LSM2 [Cucumis sativus] >XP_031744245.1 sm-like protein LSM2 [Cuc...	[more]
KAD4584478.1	1.6e-45	98.92	hypothetical protein E3N88_22079 [Mikania micrantha]	[more]
EPS69310.1	1.6e-45	98.92	hypothetical protein M569_05456 [Genlisea aurea]	[more]
XP_008458018.1	1.6e-45	98.92	PREDICTED: sm-like protein LSM2 isoform X2 [Cucumis melo]	[more]
XP_008461281.1	2.6e-45	98.92	PREDICTED: sm-like protein LSM2 [Cucumis melo] >XP_021898297.1 LOW QUALITY PROTE...	[more]

BLAST of CsaV3_7G031130 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1H595	7.2e-46	94.62	Sm-like protein LSM2 OS=Arabidopsis thaliana OX=3702 GN=LSM2 PE=1 SV=1	[more]
Q9Y333	8.3e-34	75.56	U6 snRNA-associated Sm-like protein LSm2 OS=Homo sapiens OX=9606 GN=LSM2 PE=1 SV...	[more]
O35900	8.3e-34	75.56	U6 snRNA-associated Sm-like protein LSm2 OS=Mus musculus OX=10090 GN=Lsm2 PE=1 S...	[more]
Q54TF6	1.9e-30	67.03	Probable U6 snRNA-associated Sm-like protein LSm2 OS=Dictyostelium discoideum OX...	[more]
P38203	2.6e-27	66.29	U6 snRNA-associated Sm-like protein LSm2 OS=Saccharomyces cerevisiae (strain ATC...	[more]

BLAST of CsaV3_7G031130 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9T1	5.8e-46	100.00	Sm-like protein LSM2 OS=Cucumis sativus OX=3659 GN=Csa_7G428250 PE=3 SV=1	[more]
A0A5N6NC01	7.5e-46	98.92	Sm domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_22079 PE=3 ...	[more]
S8CR98	7.5e-46	98.92	Sm-like protein LSM2 OS=Genlisea aurea OX=192259 GN=M569_05456 PE=3 SV=1	[more]
A0A1S3C840	7.5e-46	98.92	Sm-like protein LSM2 OS=Cucumis melo OX=3656 GN=LOC103497556 PE=3 SV=1	[more]
A0A4Y7L7W5	1.3e-45	98.92	Sm-like protein LSM2 OS=Papaver somniferum OX=3469 GN=C5167_020832 PE=3 SV=1	[more]

BLAST of CsaV3_7G031130 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G03330.1	5.1e-47	94.62	Small nuclear ribonucleoprotein family protein	[more]
AT3G07590.1	4.1e-04	29.27	Small nuclear ribonucleoprotein family protein	[more]
AT3G07590.2	4.1e-04	29.27	Small nuclear ribonucleoprotein family protein	[more]
AT4G02840.1	4.1e-04	29.27	Small nuclear ribonucleoprotein family protein	[more]
AT3G59810.1	7.0e-04	33.85	Small nuclear ribonucleoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 5..72 e-value: 2.4E-17 score: 73.6
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 7..71 e-value: 1.0E-16 score: 60.3
IPR016654	U6 snRNA-associated Sm-like protein LSm2	PIRSF	PIRSF016394	Lsm2	coord: 1..93 e-value: 3.1E-51 score: 169.3
IPR016654	U6 snRNA-associated Sm-like protein LSm2	PANTHER	PTHR13829	SNRNP CORE PROTEIN FAMILY MEMBER	coord: 1..91
IPR016654	U6 snRNA-associated Sm-like protein LSm2	CDD	cd01725	LSm2	coord: 2..90 e-value: 5.3558E-63 score: 183.559
None	No IPR available	GENE3D	2.30.30.100		coord: 1..92 e-value: 4.5E-32 score: 111.3
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 3..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G031130.1	CsaV3_7G031130.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006397	mRNA processing