CsaV3_7G030250 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G030250
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionADP-ribosylation factor
Locationchr7: 19150298 .. 19150504 (-)
RNA-Seq ExpressionCsaV3_7G030250
SyntenyCsaV3_7G030250
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGTCTCTTTTGATGTTATTGAAGGCTTTAATGGGAGGCTATGGAGATGATGAAGATCTTGAAGGGAATGGTGGTGAATTTGAGAGGAAGGTTGATGGATTATCTGAGTTTGAGTTTTTGAGTTTGGGTGGTGGTGGAGATGAGGATGGAGAGGAGTTGAAGAAGATATGGAAGTTGCTTGGAGAAAACTGTCTTTGGCCTTGA

mRNA sequence

ATGTCGTCTCTTTTGATGTTATTGAAGGCTTTAATGGGAGGCTATGGAGATGATGAAGATCTTGAAGGGAATGGTGGTGAATTTGAGAGGAAGGTTGATGGATTATCTGAGTTTGAGTTTTTGAGTTTGGGTGGTGGTGGAGATGAGGATGGAGAGGAGTTGAAGAAGATATGGAAGTTGCTTGGAGAAAACTGTCTTTGGCCTTGA

Coding sequence (CDS)

ATGTCGTCTCTTTTGATGTTATTGAAGGCTTTAATGGGAGGCTATGGAGATGATGAAGATCTTGAAGGGAATGGTGGTGAATTTGAGAGGAAGGTTGATGGATTATCTGAGTTTGAGTTTTTGAGTTTGGGTGGTGGTGGAGATGAGGATGGAGAGGAGTTGAAGAAGATATGGAAGTTGCTTGGAGAAAACTGTCTTTGGCCTTGA

Protein sequence

MSSLLMLLKALMGGYGDDEDLEGNGGEFERKVDGLSEFEFLSLGGGGDEDGEELKKIWKLLGENCLWP*
Homology
BLAST of CsaV3_7G030250 vs. NCBI nr
Match: KGN45042.1 (hypothetical protein Csa_016734 [Cucumis sativus])

HSP 1 Score: 144.4 bits (363), Expect = 3.6e-31
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0

Query: 1  MSSLLMLLKALMGGYGDDEDLEGNGGEFERKVDGLSEFEFLSLGGGGDEDGEELKKIWKL 60
          MSSLLMLLKALMGGYGDDEDLEGNGGEFERKVDGLSEFEFLSLGGGGDEDGEELKKIWKL
Sbjct: 1  MSSLLMLLKALMGGYGDDEDLEGNGGEFERKVDGLSEFEFLSLGGGGDEDGEELKKIWKL 60

Query: 61 LGENCLWP 69
          LGENCLWP
Sbjct: 61 LGENCLWP 68

BLAST of CsaV3_7G030250 vs. NCBI nr
Match: KAA0058539.1 (ADP-ribosylation factor [Cucumis melo var. makuwa] >TYJ96895.1 ADP-ribosylation factor [Cucumis melo var. makuwa])

HSP 1 Score: 90.1 bits (222), Expect = 8.0e-15
Identity = 47/64 (73.44%), Postives = 49/64 (76.56%), Query Frame = 0

Query: 9   KALMGGYGDDEDLEGNGGEFERKVDGLSEFEFLSL----GGGGDEDGEELKKIWKLLGEN 68
           KALMG YGDDEDLE       + VDGLSEFEFLS     GGGGDED EELKKIWKLLGE+
Sbjct: 180 KALMGVYGDDEDLE------RKVVDGLSEFEFLSCVTMEGGGGDEDEEELKKIWKLLGES 237

BLAST of CsaV3_7G030250 vs. NCBI nr
Match: KAG6593257.1 (hypothetical protein SDJN03_12733, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 65.1 bits (157), Expect = 2.7e-07
Identity = 42/75 (56.00%), Postives = 51/75 (68.00%), Query Frame = 0

Query: 1  MSSLLMLLKALMGGYG----DDEDLEGNGGEFERKVDGL---SEFEFLSLGGGGDEDGEE 60
          M+SLL+LLKAL+G YG    +D+DLE  GG FE+K+DG    S FEF S      ED EE
Sbjct: 1  MASLLVLLKALIGVYGHDDNNDDDLERVGG-FEKKLDGSENGSGFEFFSC--VTMEDVEE 60

Query: 61 LKKIWKLLGENCLWP 69
          LKK WKLLG+  +WP
Sbjct: 61 LKKTWKLLGQTFVWP 72

BLAST of CsaV3_7G030250 vs. ExPASy TrEMBL
Match: A0A0A0K9K3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G414400 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.7e-31
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0

Query: 1  MSSLLMLLKALMGGYGDDEDLEGNGGEFERKVDGLSEFEFLSLGGGGDEDGEELKKIWKL 60
          MSSLLMLLKALMGGYGDDEDLEGNGGEFERKVDGLSEFEFLSLGGGGDEDGEELKKIWKL
Sbjct: 1  MSSLLMLLKALMGGYGDDEDLEGNGGEFERKVDGLSEFEFLSLGGGGDEDGEELKKIWKL 60

Query: 61 LGENCLWP 69
          LGENCLWP
Sbjct: 61 LGENCLWP 68

BLAST of CsaV3_7G030250 vs. ExPASy TrEMBL
Match: A0A5A7UYF2 (ADP-ribosylation factor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold670G00050 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.9e-15
Identity = 47/64 (73.44%), Postives = 49/64 (76.56%), Query Frame = 0

Query: 9   KALMGGYGDDEDLEGNGGEFERKVDGLSEFEFLSL----GGGGDEDGEELKKIWKLLGEN 68
           KALMG YGDDEDLE       + VDGLSEFEFLS     GGGGDED EELKKIWKLLGE+
Sbjct: 180 KALMGVYGDDEDLE------RKVVDGLSEFEFLSCVTMEGGGGDEDEEELKKIWKLLGES 237

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN45042.13.6e-31100.00hypothetical protein Csa_016734 [Cucumis sativus][more]
KAA0058539.18.0e-1573.44ADP-ribosylation factor [Cucumis melo var. makuwa] >TYJ96895.1 ADP-ribosylation ... [more]
KAG6593257.12.7e-0756.00hypothetical protein SDJN03_12733, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K9K31.7e-31100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G414400 PE=4 SV=1[more]
A0A5A7UYF23.9e-1573.44ADP-ribosylation factor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G030250.1CsaV3_7G030250.1mRNA