CsaV3_7G028380 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_7G028380
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr7: 17877704 .. 17878395 (+)
RNA-Seq Expression	CsaV3_7G028380
Synteny	CsaV3_7G028380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGGTTAGTTTCCTCACAAAGATTCCAAAATGATTCAATGGTTTCTCTTCTTAGAGAGGGTAGAATATCTAAACTCGCAAAGGATGAATAACTAATCTGATATTTGAAGAACTCCCGGTGTCCACGTCAGTTTGCCACCTGTAGCTGAGTCATCACCTAAGTCATTAAGTTGACTCATCTTGTGACGACCATTCTGTTCCTCAATAACACCCAAATAGAAACAAAGAGAAACAAATATTATCAAAGTTATCCTAAAAGTTTTAAAGCATTCTTCCGGTGTTAATCATCAATGTCACCCACACTTTGGTTTGCAAATTTCATCATTATCACTAGTTTTAGAATGAAGTGCTTCAAAACAAACCACATTTGTATGTGGCAGTTAAGAAGCATGCAAACGAGAGGGAAGGAGAACAATTTCAAGACAACAAGGCATGTCTATCCTCGGAGGACAATGAAACAGCATCAGTTCACTTCCACGGGAAATTGGGATGTGGTCGAGTCAAGCGGCATTATCCGCTTGATGAACAGAATATGCTCCTGCAGCCAGCCAAACATTCCGATCCTAACAGCAGGGAAGAGAGGGAAGATAGAGAAGGAAACAAAGTAGAGCACAACATAGTGTTTGTAAAGACACCAAGTAGGAGTGCAAGGAAAAACAGAAAGAACTGCATAAACTAACCAAATCCGC

mRNA sequence

ATGAATGTTAAGAAGCATGCAAACGAGAGGGAAGGAGAACAATTTCAAGACAACAAGGCATGTCTATCCTCGGAGGACAATGAAACAGCATCAGTTCACTTCCACGGGAAATTGGGATGTGGTCGAGTCAAGCGGCATTATCCGCTTGATGAACAGAATATGCTCCTGCAGCCAGCCAAACATTCCGATCCTAACAGCAGGGAAGAGAGGGAAGATAGAGAAGGAAACAAAGTAGAGCACAACATAGTGTTTGTAAAGACACCAAGTAGGAGTGCAAGGAAAAACAGAAAGAACTGCATAAACTAA

Coding sequence (CDS)

ATGAATGTTAAGAAGCATGCAAACGAGAGGGAAGGAGAACAATTTCAAGACAACAAGGCATGTCTATCCTCGGAGGACAATGAAACAGCATCAGTTCACTTCCACGGGAAATTGGGATGTGGTCGAGTCAAGCGGCATTATCCGCTTGATGAACAGAATATGCTCCTGCAGCCAGCCAAACATTCCGATCCTAACAGCAGGGAAGAGAGGGAAGATAGAGAAGGAAACAAAGTAGAGCACAACATAGTGTTTGTAAAGACACCAAGTAGGAGTGCAAGGAAAAACAGAAAGAACTGCATAAACTAA

Protein sequence

MNVKKHANEREGEQFQDNKACLSSEDNETASVHFHGKLGCGRVKRHYPLDEQNMLLQPAKHSDPNSREEREDREGNKVEHNIVFVKTPSRSARKNRKNCIN*

Homology

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BLAST of CsaV3_7G028380 vs. NCBI nr
Match: KAE8646322.1 (hypothetical protein Csa_016201 [Cucumis sativus])

HSP 1 Score: 208.4 bits (529), Expect = 3.0e-50
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MNVKKHANEREGEQFQDNKACLSSEDNETASVHFHGKLGCGRVKRHYPLDEQNMLLQPAK 60
           MNVKKHANEREGEQFQDNKACLSSEDNETASVHFHGKLGCGRVKRHYPLDEQNMLLQPAK
Sbjct: 1   MNVKKHANEREGEQFQDNKACLSSEDNETASVHFHGKLGCGRVKRHYPLDEQNMLLQPAK 60

Query: 61  HSDPNSREEREDREGNKVEHNIVFVKTPSRSARKNRKNCIN 102
           HSDPNSREEREDREGNKVEHNIVFVKTPSRSARKNRKNCIN
Sbjct: 61  HSDPNSREEREDREGNKVEHNIVFVKTPSRSARKNRKNCIN 101

The following BLAST results are available for this feature:

BLAST of CsaV3_7G028380 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8646322.1	3.0e-50	100.00	hypothetical protein Csa_016201 [Cucumis sativus]	[more]

BLAST of CsaV3_7G028380 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G028380 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G028380 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..80
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..80
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G028380.1	CsaV3_7G028380.1	mRNA