CsaV3_7G027230 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_7G027230
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	RING-type E3 ubiquitin transferase
Location	chr7: 16826170 .. 16826797 (-)
RNA-Seq Expression	CsaV3_7G027230
Synteny	CsaV3_7G027230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAACAGCCTCTGTGCAATGTCTGATTAACAGTATTTCCAGATTCATTCATCTAGTTTCATGCCACACTACAAAGCCTTTGCCTCTTCCCAAGAAATGCAGAAATCTCGTTGTTGTCTTAAAACTTCTGAAAGTCGTCCTTGATGATGTCATTAACCTCAAACTCTCTTCAGATGAGTTACTTTATCGTGAATGTGAGTCACTGGATGCAGCTGTATATGAAGCTCGAGAATTCATCGAAAAATGGTGTCTGAAGACAGCAAAATTTACAGTGAGTTACCTTTTGAGAACTAGCCATATTTCAGTTCTTTCTCAGATTTTATATTAGATTTCTTTTTCCTTTTTCTAAATAACTAAGTTGTTTGTACTTCGGTACAAGTCCTTTTTCATTTTATCAATGAAAATCCTTGTTTCCATTTCAAAAATAAATTAATAATAATATTAACTAAGCTGTTTGGAGTAGGAAACACTTGGCTTGAACTTTTTCTCTCTTATTTTGAAATAAAAGTTCTCATGATTTTGATACATCTTTTCTCATAATTTTCTGCTTATTTGATAAGAATGATATTGACATTTAATGGACTGTCCAGAAATGTCTTGAAGGCCTTCAATCATGGAAGCTATGA

mRNA sequence

ATGGGAACAGCCTCTGTGCAATGTCTGATTAACAGTATTTCCAGATTCATTCATCTAGTTTCATGCCACACTACAAAGCCTTTGCCTCTTCCCAAGAAATGCAGAAATCTCGTTGTTGTCTTAAAACTTCTGAAAGTCGTCCTTGATGATGTCATTAACCTCAAACTCTCTTCAGATGAGTTACTTTATCGTGAATGTGAGTCACTGGATGCAGCTGTATATGAAGCTCGAGAATTCATCGAAAAATGGTGTCTGAAGACAGCAAAATTTACAAAATGTCTTGAAGGCCTTCAATCATGGAAGCTATGA

Coding sequence (CDS)

ATGGGAACAGCCTCTGTGCAATGTCTGATTAACAGTATTTCCAGATTCATTCATCTAGTTTCATGCCACACTACAAAGCCTTTGCCTCTTCCCAAGAAATGCAGAAATCTCGTTGTTGTCTTAAAACTTCTGAAAGTCGTCCTTGATGATGTCATTAACCTCAAACTCTCTTCAGATGAGTTACTTTATCGTGAATGTGAGTCACTGGATGCAGCTGTATATGAAGCTCGAGAATTCATCGAAAAATGGTGTCTGAAGACAGCAAAATTTACAAAATGTCTTGAAGGCCTTCAATCATGGAAGCTATGA

Protein sequence

MGTASVQCLINSISRFIHLVSCHTTKPLPLPKKCRNLVVVLKLLKVVLDDVINLKLSSDELLYRECESLDAAVYEAREFIEKWCLKTAKFTKCLEGLQSWKL*

Homology

[Close]

BLAST of CsaV3_7G027230 vs. NCBI nr
Match: KAE8646283.1 (hypothetical protein Csa_016522 [Cucumis sativus])

HSP 1 Score: 205.7 bits (522), Expect = 1.9e-49
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MGTASVQCLINSISRFIHLVSCHTTKPLPLPKKCRNLVVVLKLLKVVLDDVINLKLSSDE 60
           MGTASVQCLINSISRFIHLVSCHTTKPLPLPKKCRNLVVVLKLLKVVLDDVINLKLSSDE
Sbjct: 1   MGTASVQCLINSISRFIHLVSCHTTKPLPLPKKCRNLVVVLKLLKVVLDDVINLKLSSDE 60

Query: 61  LLYRECESLDAAVYEAREFIEKWCLKTAKFTKCLEGLQSWKL 103
           LLYRECESLDAAVYEAREFIEKWCLKTAKFTKCLEGLQSWKL
Sbjct: 61  LLYRECESLDAAVYEAREFIEKWCLKTAKFTKCLEGLQSWKL 102

[Close]

BLAST of CsaV3_7G027230 vs. NCBI nr
Match: XP_011659249.2 (uncharacterized protein LOC101202866 isoform X2 [Cucumis sativus])

HSP 1 Score: 205.7 bits (522), Expect = 1.9e-49
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MGTASVQCLINSISRFIHLVSCHTTKPLPLPKKCRNLVVVLKLLKVVLDDVINLKLSSDE 60
           MGTASVQCLINSISRFIHLVSCHTTKPLPLPKKCRNLVVVLKLLKVVLDDVINLKLSSDE
Sbjct: 105 MGTASVQCLINSISRFIHLVSCHTTKPLPLPKKCRNLVVVLKLLKVVLDDVINLKLSSDE 164

Query: 61  LLYRECESLDAAVYEAREFIEKWCLKTAKFTKCLEGLQSWKL 103
           LLYRECESLDAAVYEAREFIEKWCLKTAKFTKCLEGLQSWKL
Sbjct: 165 LLYRECESLDAAVYEAREFIEKWCLKTAKFTKCLEGLQSWKL 206

[Close]

BLAST of CsaV3_7G027230 vs. NCBI nr
Match: XP_011659248.2 (uncharacterized protein LOC101202866 isoform X1 [Cucumis sativus])

HSP 1 Score: 205.7 bits (522), Expect = 1.9e-49
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MGTASVQCLINSISRFIHLVSCHTTKPLPLPKKCRNLVVVLKLLKVVLDDVINLKLSSDE 60
           MGTASVQCLINSISRFIHLVSCHTTKPLPLPKKCRNLVVVLKLLKVVLDDVINLKLSSDE
Sbjct: 109 MGTASVQCLINSISRFIHLVSCHTTKPLPLPKKCRNLVVVLKLLKVVLDDVINLKLSSDE 168

Query: 61  LLYRECESLDAAVYEAREFIEKWCLKTAKFTKCLEGLQSWKL 103
           LLYRECESLDAAVYEAREFIEKWCLKTAKFTKCLEGLQSWKL
Sbjct: 169 LLYRECESLDAAVYEAREFIEKWCLKTAKFTKCLEGLQSWKL 210

[Close]

BLAST of CsaV3_7G027230 vs. NCBI nr
Match: XP_038897882.1 (U-box domain-containing protein 3 isoform X1 [Benincasa hispida] >XP_038897883.1 U-box domain-containing protein 3 isoform X1 [Benincasa hispida])

HSP 1 Score: 162.2 bits (409), Expect = 2.5e-36
Identity = 82/95 (86.32%), Postives = 86/95 (90.53%), Query Frame = 0


Query: 1  MGTASVQCLINSISRFIHLVSCHTTKPLPLPKKCRNLVVVLKLLKVVLDDVINLKLSSDE 60
          MGTASVQCL NSISRFIHLVSCHTTKPLPLPKKCRNLVVVLKLLK+VLDDVI+LKLSSDE
Sbjct: 1  MGTASVQCLTNSISRFIHLVSCHTTKPLPLPKKCRNLVVVLKLLKLVLDDVISLKLSSDE 60

Query: 61 LLYRECESLDAAVYEAREFIEKWCLKTAKFTKCLE 96
          LLY ECESLDAAV EAREFIE WC KT+K    L+
Sbjct: 61 LLYSECESLDAAVNEAREFIENWCPKTSKICSALK 95

[Close]

BLAST of CsaV3_7G027230 vs. NCBI nr
Match: XP_038897885.1 (U-box domain-containing protein 3 isoform X3 [Benincasa hispida])

HSP 1 Score: 162.2 bits (409), Expect = 2.5e-36
Identity = 82/95 (86.32%), Postives = 86/95 (90.53%), Query Frame = 0


Query: 1  MGTASVQCLINSISRFIHLVSCHTTKPLPLPKKCRNLVVVLKLLKVVLDDVINLKLSSDE 60
          MGTASVQCL NSISRFIHLVSCHTTKPLPLPKKCRNLVVVLKLLK+VLDDVI+LKLSSDE
Sbjct: 1  MGTASVQCLTNSISRFIHLVSCHTTKPLPLPKKCRNLVVVLKLLKLVLDDVISLKLSSDE 60

Query: 61 LLYRECESLDAAVYEAREFIEKWCLKTAKFTKCLE 96
          LLY ECESLDAAV EAREFIE WC KT+K    L+
Sbjct: 61 LLYSECESLDAAVNEAREFIENWCPKTSKICSALK 95

[Close]

BLAST of CsaV3_7G027230 vs. ExPASy Swiss-Prot
Match: Q8GWV5 (U-box domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=PUB3 PE=2 SV=2)

HSP 1 Score: 89.7 bits (221), Expect = 2.0e-17
Identity = 43/89 (48.31%), Postives = 64/89 (71.91%), Query Frame = 0


Query: 1  MGTASVQCLINSISRFIHLVSCHTTKPLPLPKKCRNLVVVLKLLKVVLDDVINLKLSSDE 60
          M    V+CL+NSISR++HLV+C T +  P+     N+V++LKLLK +LD+V++ K+ SD+
Sbjct: 1  MDPVPVRCLLNSISRYLHLVACQTIRFNPIQTCIGNMVLLLKLLKPLLDEVVDCKIPSDD 60

Query: 61 LLYRECESLDAAVYEAREFIEKWCLKTAK 90
           LY+ CE LD+ V +AREF+E W  K +K
Sbjct: 61 CLYKGCEDLDSVVNQAREFLEDWSPKLSK 89

[Close]

BLAST of CsaV3_7G027230 vs. ExPASy TrEMBL
Match: A0A0A0K726 (RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_7G374670 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.6e-36
Identity = 81/95 (85.26%), Postives = 86/95 (90.53%), Query Frame = 0


Query: 1  MGTASVQCLINSISRFIHLVSCHTTKPLPLPKKCRNLVVVLKLLKVVLDDVINLKLSSDE 60
          MGTASVQCL NSISRFIHLVSCHTTKPLPLPKKC+NLVVVLKLLKVVLDDVI+LKLSSDE
Sbjct: 1  MGTASVQCLTNSISRFIHLVSCHTTKPLPLPKKCKNLVVVLKLLKVVLDDVISLKLSSDE 60

Query: 61 LLYRECESLDAAVYEAREFIEKWCLKTAKFTKCLE 96
          LLY ECESLDAAV EAREF+E WC KT+K    L+
Sbjct: 61 LLYSECESLDAAVNEAREFVENWCPKTSKICSALK 95

[Close]

BLAST of CsaV3_7G027230 vs. ExPASy TrEMBL
Match: A0A1S3BS34 (RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103492591 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 4.5e-36
Identity = 81/95 (85.26%), Postives = 84/95 (88.42%), Query Frame = 0


Query: 1  MGTASVQCLINSISRFIHLVSCHTTKPLPLPKKCRNLVVVLKLLKVVLDDVINLKLSSDE 60
          MGTASVQCL NSISRFIHLVSCHTTKPLPLPKKCRNLVVVLKLLKVVLDDVI+LKLSSDE
Sbjct: 1  MGTASVQCLTNSISRFIHLVSCHTTKPLPLPKKCRNLVVVLKLLKVVLDDVISLKLSSDE 60

Query: 61 LLYRECESLDAAVYEAREFIEKWCLKTAKFTKCLE 96
          L Y ECESLD AV EAREFIE WC KT+K    L+
Sbjct: 61 LFYSECESLDTAVNEAREFIENWCPKTSKICSALK 95

[Close]

BLAST of CsaV3_7G027230 vs. ExPASy TrEMBL
Match: A0A5D3C862 (RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold886G00400 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 4.5e-36
Identity = 81/95 (85.26%), Postives = 84/95 (88.42%), Query Frame = 0


Query: 1  MGTASVQCLINSISRFIHLVSCHTTKPLPLPKKCRNLVVVLKLLKVVLDDVINLKLSSDE 60
          MGTASVQCL NSISRFIHLVSCHTTKPLPLPKKCRNLVVVLKLLKVVLDDVI+LKLSSDE
Sbjct: 1  MGTASVQCLTNSISRFIHLVSCHTTKPLPLPKKCRNLVVVLKLLKVVLDDVISLKLSSDE 60

Query: 61 LLYRECESLDAAVYEAREFIEKWCLKTAKFTKCLE 96
          L Y ECESLD AV EAREFIE WC KT+K    L+
Sbjct: 61 LFYSECESLDTAVNEAREFIENWCPKTSKICSALK 95

[Close]

BLAST of CsaV3_7G027230 vs. ExPASy TrEMBL
Match: A0A6J1H5W7 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111460827 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 3.6e-33
Identity = 76/95 (80.00%), Postives = 82/95 (86.32%), Query Frame = 0


Query: 1  MGTASVQCLINSISRFIHLVSCHTTKPLPLPKKCRNLVVVLKLLKVVLDDVINLKLSSDE 60
          MGTASVQCLINSISRFIHLVSCHTTK LPLPK C+NL VVLK LK+VLDDVI+LKLSSDE
Sbjct: 1  MGTASVQCLINSISRFIHLVSCHTTKSLPLPKNCKNLAVVLKHLKLVLDDVISLKLSSDE 60

Query: 61 LLYRECESLDAAVYEAREFIEKWCLKTAKFTKCLE 96
          LLYRECESLD AV +AREFIE WC K +K    L+
Sbjct: 61 LLYRECESLDIAVNDAREFIENWCPKMSKICSALK 95

[Close]

BLAST of CsaV3_7G027230 vs. ExPASy TrEMBL
Match: A0A6J1H675 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111460827 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 3.6e-33
Identity = 76/95 (80.00%), Postives = 82/95 (86.32%), Query Frame = 0


Query: 1   MGTASVQCLINSISRFIHLVSCHTTKPLPLPKKCRNLVVVLKLLKVVLDDVINLKLSSDE 60
           MGTASVQCLINSISRFIHLVSCHTTK LPLPK C+NL VVLK LK+VLDDVI+LKLSSDE
Sbjct: 20  MGTASVQCLINSISRFIHLVSCHTTKSLPLPKNCKNLAVVLKHLKLVLDDVISLKLSSDE 79

Query: 61  LLYRECESLDAAVYEAREFIEKWCLKTAKFTKCLE 96
           LLYRECESLD AV +AREFIE WC K +K    L+
Sbjct: 80  LLYRECESLDIAVNDAREFIENWCPKMSKICSALK 114

[Close]

BLAST of CsaV3_7G027230 vs. TAIR 10
Match: AT3G54790.1 (ARM repeat superfamily protein )

HSP 1 Score: 89.7 bits (221), Expect = 1.4e-18
Identity = 43/89 (48.31%), Postives = 64/89 (71.91%), Query Frame = 0


Query: 1  MGTASVQCLINSISRFIHLVSCHTTKPLPLPKKCRNLVVVLKLLKVVLDDVINLKLSSDE 60
          M    V+CL+NSISR++HLV+C T +  P+     N+V++LKLLK +LD+V++ K+ SD+
Sbjct: 1  MDPVPVRCLLNSISRYLHLVACQTIRFNPIQTCIGNMVLLLKLLKPLLDEVVDCKIPSDD 60

Query: 61 LLYRECESLDAAVYEAREFIEKWCLKTAK 90
           LY+ CE LD+ V +AREF+E W  K +K
Sbjct: 61 CLYKGCEDLDSVVNQAREFLEDWSPKLSK 89

[Close]

BLAST of CsaV3_7G027230 vs. TAIR 10
Match: AT3G54790.2 (ARM repeat superfamily protein )

HSP 1 Score: 58.2 bits (139), Expect = 4.7e-09
Identity = 27/53 (50.94%), Postives = 41/53 (77.36%), Query Frame = 0


Query: 37 LVVVLKLLKVVLDDVINLKLSSDELLYRECESLDAAVYEAREFIEKWCLKTAK 90
          +V++LKLLK +LD+V++ K+ SD+ LY+ CE LD+ V +AREF+E W  K +K
Sbjct: 1  MVLLLKLLKPLLDEVVDCKIPSDDCLYKGCEDLDSVVNQAREFLEDWSPKLSK 53

The following BLAST results are available for this feature:

BLAST of CsaV3_7G027230 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8646283.1	1.9e-49	100.00	hypothetical protein Csa_016522 [Cucumis sativus]	[more]
XP_011659249.2	1.9e-49	100.00	uncharacterized protein LOC101202866 isoform X2 [Cucumis sativus]	[more]
XP_011659248.2	1.9e-49	100.00	uncharacterized protein LOC101202866 isoform X1 [Cucumis sativus]	[more]
XP_038897882.1	2.5e-36	86.32	U-box domain-containing protein 3 isoform X1 [Benincasa hispida] >XP_038897883.1...	[more]
XP_038897885.1	2.5e-36	86.32	U-box domain-containing protein 3 isoform X3 [Benincasa hispida]	[more]

BLAST of CsaV3_7G027230 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GWV5	2.0e-17	48.31	U-box domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=PUB3 PE=2 S...	[more]

BLAST of CsaV3_7G027230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K726	1.6e-36	85.26	RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_7G374670 PE...	[more]
A0A1S3BS34	4.5e-36	85.26	RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103492591 PE=4 ...	[more]
A0A5D3C862	4.5e-36	85.26	RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A6J1H5W7	3.6e-33	80.00	RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111460827...	[more]
A0A6J1H675	3.6e-33	80.00	RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111460827...	[more]

BLAST of CsaV3_7G027230 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G54790.1	1.4e-18	48.31	ARM repeat superfamily protein	[more]
AT3G54790.2	4.7e-09	50.94	ARM repeat superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR23315	U BOX DOMAIN-CONTAINING	coord: 6..95
None	No IPR available	PANTHER	PTHR23315:SF278	U-BOX DOMAIN-CONTAINING PROTEIN 3	coord: 6..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G027230.1	CsaV3_7G027230.1	mRNA