CsaV3_7G025260 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_7G025260
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Protein MNN4-like
Location	chr7: 14614688 .. 14615260 (+)
RNA-Seq Expression	CsaV3_7G025260
Synteny	CsaV3_7G025260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGGTGGAGAAGGTTAAGAAGGAGATGTTGAGGCAACAAGTTGCCAAGAGGCGAGAAGAGAAAGTGAAGAAGGTTGATTCTCATTGTGAAGTGATTCTGAGAGAAGAAGAGGAGGACCATGATGATGAGGAAAAAAACACCCATTACTTTTGCCAATATCCACAAATACTTCAAAGTGGAAAAATGGATTTACCATTTCAAAGGAGGTCTTCCGAGCTTTTTGAGTTCCCTTATCCATACGTTGAAGTGAGAGAAACTCTTTGTGGTGTGTTCGACATGAGGGTAGACGTAGTGAACCTCTTTTATAAAAGCTTCATTCATGATGAAGAGAACTACACAGTGGTTAAGCAGGAACACGTGTACTTTGGGCTAGACGACATTAATGCGTTCTATGGGTTGGATACCAATGAAGTCGGTCAAGTCATCTTCAAAAATTCAACTCCAAAAGACATGGATGACGGGTTAAAGACTATCACTTGGTTAAAAACCGAGTGGGACAACAAACCAACTGAGAAATATCAACTCTTTTCGCATAATCTCAACACGTGTGCTAGCATCTGGCTCTTTTAG

mRNA sequence

ATGAGGGTGGAGAAGGTTAAGAAGGAGATGTTGAGGCAACAAGTTGCCAAGAGGCGAGAAGAGAAAGTGAAGAAGGTTGATTCTCATTGTGAAGTGATTCTGAGAGAAGAAGAGGAGGACCATGATGATGAGGAAAAAAACACCCATTACTTTTGCCAATATCCACAAATACTTCAAAGTGGAAAAATGGATTTACCATTTCAAAGGAGGTCTTCCGAGCTTTTTGAGTTCCCTTATCCATACGTTGAAGTGAGAGAAACTCTTTGTGGTGTGTTCGACATGAGGGTAGACGTAGTGAACCTCTTTTATAAAAGCTTCATTCATGATGAAGAGAACTACACAGTGGTTAAGCAGGAACACGTGTACTTTGGGCTAGACGACATTAATGCGTTCTATGGGTTGGATACCAATGAAGTCGGTCAAGTCATCTTCAAAAATTCAACTCCAAAAGACATGGATGACGGGTTAAAGACTATCACTTGGTTAAAAACCGAGTGGGACAACAAACCAACTGAGAAATATCAACTCTTTTCGCATAATCTCAACACGTGTGCTAGCATCTGGCTCTTTTAG

Coding sequence (CDS)

ATGAGGGTGGAGAAGGTTAAGAAGGAGATGTTGAGGCAACAAGTTGCCAAGAGGCGAGAAGAGAAAGTGAAGAAGGTTGATTCTCATTGTGAAGTGATTCTGAGAGAAGAAGAGGAGGACCATGATGATGAGGAAAAAAACACCCATTACTTTTGCCAATATCCACAAATACTTCAAAGTGGAAAAATGGATTTACCATTTCAAAGGAGGTCTTCCGAGCTTTTTGAGTTCCCTTATCCATACGTTGAAGTGAGAGAAACTCTTTGTGGTGTGTTCGACATGAGGGTAGACGTAGTGAACCTCTTTTATAAAAGCTTCATTCATGATGAAGAGAACTACACAGTGGTTAAGCAGGAACACGTGTACTTTGGGCTAGACGACATTAATGCGTTCTATGGGTTGGATACCAATGAAGTCGGTCAAGTCATCTTCAAAAATTCAACTCCAAAAGACATGGATGACGGGTTAAAGACTATCACTTGGTTAAAAACCGAGTGGGACAACAAACCAACTGAGAAATATCAACTCTTTTCGCATAATCTCAACACGTGTGCTAGCATCTGGCTCTTTTAG

Protein sequence

MRVEKVKKEMLRQQVAKRREEKVKKVDSHCEVILREEEEDHDDEEKNTHYFCQYPQILQSGKMDLPFQRRSSELFEFPYPYVEVRETLCGVFDMRVDVVNLFYKSFIHDEENYTVVKQEHVYFGLDDINAFYGLDTNEVGQVIFKNSTPKDMDDGLKTITWLKTEWDNKPTEKYQLFSHNLNTCASIWLF*

Homology

[Close]

BLAST of CsaV3_7G025260 vs. NCBI nr
Match: KGN44535.1 (hypothetical protein Csa_015502 [Cucumis sativus])

HSP 1 Score: 390.2 bits (1001), Expect = 1.0e-104
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0


Query: 1   MRVEKVKKEMLRQQVAKRREEKVKKVDSHCEVILREEEEDHDDEEKNTHYFCQYPQILQS 60
           MRVEKVKKEMLRQQVAKRREEKVKKVDSHCEVILREEEEDHDDEEKNTHYFCQYPQILQS
Sbjct: 1   MRVEKVKKEMLRQQVAKRREEKVKKVDSHCEVILREEEEDHDDEEKNTHYFCQYPQILQS 60

Query: 61  GKMDLPFQRRSSELFEFPYPYVEVRETLCGVFDMRVDVVNLFYKSFIHDEENYTVVKQEH 120
           GKMDLPFQRRSSELFEFPYPYVEVRETLCGVFDMRVDVVNLFYKSFIHDEENYTVVKQEH
Sbjct: 61  GKMDLPFQRRSSELFEFPYPYVEVRETLCGVFDMRVDVVNLFYKSFIHDEENYTVVKQEH 120

Query: 121 VYFGLDDINAFYGLDTNEVGQVIFKNSTPKDMDDGLKTITWLKTEWDNKPTEKYQLFSHN 180
           VYFGLDDINAFYGLDTNEVGQVIFKNSTPKDMDDGLKTITWLKTEWDNKPTEKYQLFSHN
Sbjct: 121 VYFGLDDINAFYGLDTNEVGQVIFKNSTPKDMDDGLKTITWLKTEWDNKPTEKYQLFSHN 180

Query: 181 LNTCASIWLF 191
           LNTCASIWLF
Sbjct: 181 LNTCASIWLF 190

[Close]

BLAST of CsaV3_7G025260 vs. NCBI nr
Match: TYK25886.1 (protein MNN4-like [Cucumis melo var. makuwa])

HSP 1 Score: 119.4 bits (298), Expect = 3.4e-23
Identity = 74/184 (40.22%), Postives = 102/184 (55.43%), Query Frame = 0


Query: 6   VKKEMLRQQVAKRREEKVKKVDSHCEVILREEEEDHDDEEKNTHYFCQYPQILQSGKMDL 65
           +K ++L +Q A R+EEK KK   H E I +EEEED + E +      +  +     K   
Sbjct: 88  MKMKVLSKQFADRQEEKEKK-GPHIEDI-KEEEEDQESEMEKPLSANEVSKQFMIEKRLY 147

Query: 66  PFQRRSSELFEFPYPYVEVRETLCGVFDMRVDVVNLFYKSFIHDEENYTVVKQEHVYFGL 125
           PF+         P       +   GV  +R DV NLFYK +I  +++Y ++K + VYF  
Sbjct: 148 PFKGIMLAFLASPIRAFSQGKFFKGVTTIRADVKNLFYKGYISKKKHYVMIKGKKVYFRP 207

Query: 126 DDINAFYGLDTNEVGQVIFKNSTPKDMDDGLKTITWLKTEWDNKPTEKYQLFSHNLNTCA 185
           + INA Y LD N +G  IFKN T +DM D L  ++W  T+WD  PT KYQLF HNLNT A
Sbjct: 208 EVINALYRLDDNVIGHAIFKNPTQQDMQDALARVSWPGTKWDRTPTGKYQLFPHNLNTAA 267

Query: 186 SIWL 190
           ++ L
Sbjct: 268 NVRL 269

[Close]

BLAST of CsaV3_7G025260 vs. NCBI nr
Match: KAA0045357.1 (hypothetical protein E6C27_scaffold316G001360 [Cucumis melo var. makuwa])

HSP 1 Score: 110.2 bits (274), Expect = 2.1e-20
Identity = 48/90 (53.33%), Postives = 63/90 (70.00%), Query Frame = 0


Query: 94  MRVDVVNLFYKSFIHDEENYTVVKQEHVYFGLDDINAFYGLDTNEVGQVIFKNSTPKDMD 153
           +R DVVNLFYK ++ +E+ Y +V ++ V FG D IN FYGLD NE+G  IFKN   +++ 
Sbjct: 4   IRADVVNLFYKGYMSEEKQYAMVNEKKVDFGPDAINMFYGLDDNEIGHAIFKNPKEQNLQ 63

Query: 154 DGLKTITWLKTEWDNKPTEKYQLFSHNLNT 184
           +GL  + W  T+WD  PT KYQLF HNLNT
Sbjct: 64  EGLTRVAWPGTKWDRTPTRKYQLFPHNLNT 93

[Close]

BLAST of CsaV3_7G025260 vs. NCBI nr
Match: TYJ96932.1 (hypothetical protein E5676_scaffold220G00370 [Cucumis melo var. makuwa])

HSP 1 Score: 107.1 bits (266), Expect = 1.7e-19
Identity = 47/90 (52.22%), Postives = 62/90 (68.89%), Query Frame = 0


Query: 94  MRVDVVNLFYKSFIHDEENYTVVKQEHVYFGLDDINAFYGLDTNEVGQVIFKNSTPKDMD 153
           +R DVVNLFYK +I +E+ Y +V ++ V FG D IN F+GLD NE+G  IFKN   +++ 
Sbjct: 4   IRADVVNLFYKGYISEEKQYAMVNEKKVDFGPDAINMFFGLDDNEIGHAIFKNPKEQNLQ 63

Query: 154 DGLKTITWLKTEWDNKPTEKYQLFSHNLNT 184
           +GL  + W  T+W   PT KYQLF HNLNT
Sbjct: 64  EGLTRVAWPGTKWGRMPTRKYQLFPHNLNT 93

[Close]

BLAST of CsaV3_7G025260 vs. NCBI nr
Match: KAA0041264.1 (hypothetical protein E6C27_scaffold128G002490 [Cucumis melo var. makuwa] >TYK16063.1 hypothetical protein E5676_scaffold32G00800 [Cucumis melo var. makuwa])

HSP 1 Score: 105.9 bits (263), Expect = 3.9e-19
Identity = 49/96 (51.04%), Postives = 66/96 (68.75%), Query Frame = 0


Query: 94  MRVDVVNLFYKSFIHDEENYTVVKQEHVYFGLDDINAFYGLDTNEVGQVIFKNSTPKDMD 153
           +R  VV LFY+++I+ EE Y  VK++ V FG   INA YGL  NE+G +IF+N   +D+ 
Sbjct: 58  IRPSVVYLFYRAYINIEELYAEVKEKRVDFGPKAINALYGLKNNEIGHLIFENPKARDLQ 117

Query: 154 DGLKTITWLKTEWDNKPTEKYQLFSHNLNTCASIWL 190
           D L+ I W  T+WD  PTEKYQLF ++LNT  S+WL
Sbjct: 118 DALENIIWPGTKWDRMPTEKYQLFPNDLNTEVSVWL 153

[Close]

BLAST of CsaV3_7G025260 vs. ExPASy TrEMBL
Match: A0A0A0K4F2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G327740 PE=4 SV=1)

HSP 1 Score: 390.2 bits (1001), Expect = 5.0e-105
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0


Query: 1   MRVEKVKKEMLRQQVAKRREEKVKKVDSHCEVILREEEEDHDDEEKNTHYFCQYPQILQS 60
           MRVEKVKKEMLRQQVAKRREEKVKKVDSHCEVILREEEEDHDDEEKNTHYFCQYPQILQS
Sbjct: 1   MRVEKVKKEMLRQQVAKRREEKVKKVDSHCEVILREEEEDHDDEEKNTHYFCQYPQILQS 60

Query: 61  GKMDLPFQRRSSELFEFPYPYVEVRETLCGVFDMRVDVVNLFYKSFIHDEENYTVVKQEH 120
           GKMDLPFQRRSSELFEFPYPYVEVRETLCGVFDMRVDVVNLFYKSFIHDEENYTVVKQEH
Sbjct: 61  GKMDLPFQRRSSELFEFPYPYVEVRETLCGVFDMRVDVVNLFYKSFIHDEENYTVVKQEH 120

Query: 121 VYFGLDDINAFYGLDTNEVGQVIFKNSTPKDMDDGLKTITWLKTEWDNKPTEKYQLFSHN 180
           VYFGLDDINAFYGLDTNEVGQVIFKNSTPKDMDDGLKTITWLKTEWDNKPTEKYQLFSHN
Sbjct: 121 VYFGLDDINAFYGLDTNEVGQVIFKNSTPKDMDDGLKTITWLKTEWDNKPTEKYQLFSHN 180

Query: 181 LNTCASIWLF 191
           LNTCASIWLF
Sbjct: 181 LNTCASIWLF 190

[Close]

BLAST of CsaV3_7G025260 vs. ExPASy TrEMBL
Match: A0A5D3DQE5 (Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold436G001110 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.6e-23
Identity = 74/184 (40.22%), Postives = 102/184 (55.43%), Query Frame = 0


Query: 6   VKKEMLRQQVAKRREEKVKKVDSHCEVILREEEEDHDDEEKNTHYFCQYPQILQSGKMDL 65
           +K ++L +Q A R+EEK KK   H E I +EEEED + E +      +  +     K   
Sbjct: 88  MKMKVLSKQFADRQEEKEKK-GPHIEDI-KEEEEDQESEMEKPLSANEVSKQFMIEKRLY 147

Query: 66  PFQRRSSELFEFPYPYVEVRETLCGVFDMRVDVVNLFYKSFIHDEENYTVVKQEHVYFGL 125
           PF+         P       +   GV  +R DV NLFYK +I  +++Y ++K + VYF  
Sbjct: 148 PFKGIMLAFLASPIRAFSQGKFFKGVTTIRADVKNLFYKGYISKKKHYVMIKGKKVYFRP 207

Query: 126 DDINAFYGLDTNEVGQVIFKNSTPKDMDDGLKTITWLKTEWDNKPTEKYQLFSHNLNTCA 185
           + INA Y LD N +G  IFKN T +DM D L  ++W  T+WD  PT KYQLF HNLNT A
Sbjct: 208 EVINALYRLDDNVIGHAIFKNPTQQDMQDALARVSWPGTKWDRTPTGKYQLFPHNLNTAA 267

Query: 186 SIWL 190
           ++ L
Sbjct: 268 NVRL 269

[Close]

BLAST of CsaV3_7G025260 vs. ExPASy TrEMBL
Match: A0A5A7TU45 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G001360 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.0e-20
Identity = 48/90 (53.33%), Postives = 63/90 (70.00%), Query Frame = 0


Query: 94  MRVDVVNLFYKSFIHDEENYTVVKQEHVYFGLDDINAFYGLDTNEVGQVIFKNSTPKDMD 153
           +R DVVNLFYK ++ +E+ Y +V ++ V FG D IN FYGLD NE+G  IFKN   +++ 
Sbjct: 4   IRADVVNLFYKGYMSEEKQYAMVNEKKVDFGPDAINMFYGLDDNEIGHAIFKNPKEQNLQ 63

Query: 154 DGLKTITWLKTEWDNKPTEKYQLFSHNLNT 184
           +GL  + W  T+WD  PT KYQLF HNLNT
Sbjct: 64  EGLTRVAWPGTKWDRTPTRKYQLFPHNLNT 93

[Close]

BLAST of CsaV3_7G025260 vs. ExPASy TrEMBL
Match: A0A5D3BAR9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold220G00370 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 8.4e-20
Identity = 47/90 (52.22%), Postives = 62/90 (68.89%), Query Frame = 0


Query: 94  MRVDVVNLFYKSFIHDEENYTVVKQEHVYFGLDDINAFYGLDTNEVGQVIFKNSTPKDMD 153
           +R DVVNLFYK +I +E+ Y +V ++ V FG D IN F+GLD NE+G  IFKN   +++ 
Sbjct: 4   IRADVVNLFYKGYISEEKQYAMVNEKKVDFGPDAINMFFGLDDNEIGHAIFKNPKEQNLQ 63

Query: 154 DGLKTITWLKTEWDNKPTEKYQLFSHNLNT 184
           +GL  + W  T+W   PT KYQLF HNLNT
Sbjct: 64  EGLTRVAWPGTKWGRMPTRKYQLFPHNLNT 93

[Close]

BLAST of CsaV3_7G025260 vs. ExPASy TrEMBL
Match: A0A5D3CW17 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold32G00800 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 1.9e-19
Identity = 49/96 (51.04%), Postives = 66/96 (68.75%), Query Frame = 0


Query: 94  MRVDVVNLFYKSFIHDEENYTVVKQEHVYFGLDDINAFYGLDTNEVGQVIFKNSTPKDMD 153
           +R  VV LFY+++I+ EE Y  VK++ V FG   INA YGL  NE+G +IF+N   +D+ 
Sbjct: 58  IRPSVVYLFYRAYINIEELYAEVKEKRVDFGPKAINALYGLKNNEIGHLIFENPKARDLQ 117

Query: 154 DGLKTITWLKTEWDNKPTEKYQLFSHNLNTCASIWL 190
           D L+ I W  T+WD  PTEKYQLF ++LNT  S+WL
Sbjct: 118 DALENIIWPGTKWDRMPTEKYQLFPNDLNTEVSVWL 153

The following BLAST results are available for this feature:

BLAST of CsaV3_7G025260 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44535.1	1.0e-104	100.00	hypothetical protein Csa_015502 [Cucumis sativus]	[more]
TYK25886.1	3.4e-23	40.22	protein MNN4-like [Cucumis melo var. makuwa]	[more]
KAA0045357.1	2.1e-20	53.33	hypothetical protein E6C27_scaffold316G001360 [Cucumis melo var. makuwa]	[more]
TYJ96932.1	1.7e-19	52.22	hypothetical protein E5676_scaffold220G00370 [Cucumis melo var. makuwa]	[more]
KAA0041264.1	3.9e-19	51.04	hypothetical protein E6C27_scaffold128G002490 [Cucumis melo var. makuwa] >TYK160...	[more]

BLAST of CsaV3_7G025260 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G025260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K4F2	5.0e-105	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G327740 PE=4 SV=1	[more]
A0A5D3DQE5	1.6e-23	40.22	Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold436G00...	[more]
A0A5A7TU45	1.0e-20	53.33	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BAR9	8.4e-20	52.22	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CW17	1.9e-19	51.04	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CsaV3_7G025260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G025260.1	CsaV3_7G025260.1	mRNA