CsaV3_7G021140 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_7G021140
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Plant transposase
Location	chr7: 9567358 .. 9567570 (-)
RNA-Seq Expression	CsaV3_7G021140
Synteny	CsaV3_7G021140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACTTAACTCAACCTAGTAGCGATGATGAGGCGAACGAGGAAGAAGCGATGATGAGGATTGTAAATGATAGAGATAATGTTGCCAACCCTAGTATAGAGAGAGAGATTAGGGAAACATCACCTTATCTTGACCCACTTCATCACAATAATGTGAATTATGAGGAAGCTACTACTCCACTTCCATCTTCACAGGTCATTTTCCCAGTCTAA

mRNA sequence

ATGGACTTAACTCAACCTAGTAGCGATGATGAGGCGAACGAGGAAGAAGCGATGATGAGGATTGTAAATGATAGAGATAATGTTGCCAACCCTAGTATAGAGAGAGAGATTAGGGAAACATCACCTTATCTTGACCCACTTCATCACAATAATGTGAATTATGAGGAAGCTACTACTCCACTTCCATCTTCACAGGTCATTTTCCCAGTCTAA

Coding sequence (CDS)

ATGGACTTAACTCAACCTAGTAGCGATGATGAGGCGAACGAGGAAGAAGCGATGATGAGGATTGTAAATGATAGAGATAATGTTGCCAACCCTAGTATAGAGAGAGAGATTAGGGAAACATCACCTTATCTTGACCCACTTCATCACAATAATGTGAATTATGAGGAAGCTACTACTCCACTTCCATCTTCACAGGTCATTTTCCCAGTCTAA

Protein sequence

MDLTQPSSDDEANEEEAMMRIVNDRDNVANPSIEREIRETSPYLDPLHHNNVNYEEATTPLPSSQVIFPV*

Homology

[Close]

BLAST of CsaV3_7G021140 vs. NCBI nr
Match: KGN44082.1 (hypothetical protein Csa_016717 [Cucumis sativus])

HSP 1 Score: 141.7 bits (356), Expect = 2.4e-30
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 1  MDLTQPSSDDEANEEEAMMRIVNDRDNVANPSIEREIRETSPYLDPLHHNNVNYEEATTP 60
          MDLTQPSSDDEANEEEAMMRIVNDRDNVANPSIEREIRETSPYLDPLHHNNVNYEEATTP
Sbjct: 1  MDLTQPSSDDEANEEEAMMRIVNDRDNVANPSIEREIRETSPYLDPLHHNNVNYEEATTP 60

Query: 61 LPSSQVIFPV 71
          LPSSQVIFPV
Sbjct: 61 LPSSQVIFPV 70

[Close]

BLAST of CsaV3_7G021140 vs. NCBI nr
Match: TYK04585.1 (hypothetical protein E5676_scaffold409G002220 [Cucumis melo var. makuwa])

HSP 1 Score: 70.5 bits (171), Expect = 6.7e-09
Identity = 41/67 (61.19%), Postives = 46/67 (68.66%), Query Frame = 0


Query: 1   MDLTQPSSDDEANEEEAM-MRIVNDRDNVANPSIEREIRETSPYLDPLHHNNVNYEEATT 60
           MDLTQP SDDE NE EA+ +R             EREI+ETSP  D LHH+NV+YEEATT
Sbjct: 126 MDLTQPGSDDEENEGEALHLR-------------EREIKETSPLPDTLHHSNVDYEEATT 179

Query: 61  PLPSSQV 67
           PLPSS V
Sbjct: 186 PLPSSHV 179

[Close]

BLAST of CsaV3_7G021140 vs. NCBI nr
Match: KAA0051969.1 (hypothetical protein E6C27_scaffold60G004490 [Cucumis melo var. makuwa])

HSP 1 Score: 70.5 bits (171), Expect = 6.7e-09
Identity = 41/67 (61.19%), Postives = 46/67 (68.66%), Query Frame = 0


Query: 1  MDLTQPSSDDEANEEEAM-MRIVNDRDNVANPSIEREIRETSPYLDPLHHNNVNYEEATT 60
          MDLTQP SDDE NE EA+ +R             EREI+ETSP  D LHH+NV+YEEATT
Sbjct: 1  MDLTQPGSDDEENEGEALHLR-------------EREIKETSPLPDTLHHSNVDYEEATT 54

Query: 61 PLPSSQV 67
          PLPSS V
Sbjct: 61 PLPSSHV 54

[Close]

BLAST of CsaV3_7G021140 vs. NCBI nr
Match: TYK17066.1 (Plant transposase [Cucumis melo var. makuwa])

HSP 1 Score: 59.7 bits (143), Expect = 1.2e-05
Identity = 38/67 (56.72%), Postives = 43/67 (64.18%), Query Frame = 0


Query: 1  MDLTQPSSDDEANEEEAM-MRIVNDRDNVANPSIEREIRETSPYLDPLHHNNVNYEEATT 60
          MDLTQPSSDDE N+ EA+ +R             EREIRE SP  DPLH +NV+ EEATT
Sbjct: 1  MDLTQPSSDDEKNKGEALHLR-------------EREIREISPLPDPLHQSNVDCEEATT 54

Query: 61 PLPSSQV 67
          P  SS V
Sbjct: 61 PSLSSHV 54

[Close]

BLAST of CsaV3_7G021140 vs. NCBI nr
Match: KAA0032260.1 (Plant transposase [Cucumis melo var. makuwa])

HSP 1 Score: 59.7 bits (143), Expect = 1.2e-05
Identity = 38/67 (56.72%), Postives = 43/67 (64.18%), Query Frame = 0


Query: 1  MDLTQPSSDDEANEEEAM-MRIVNDRDNVANPSIEREIRETSPYLDPLHHNNVNYEEATT 60
          MDLTQPSSDDE N+ EA+ +R             EREIRE SP  DPLH +NV+ EEATT
Sbjct: 1  MDLTQPSSDDEKNKGEALHLR-------------EREIREISPLPDPLHQSNVDCEEATT 54

Query: 61 PLPSSQV 67
          P  SS V
Sbjct: 61 PSLSSHV 54

[Close]

BLAST of CsaV3_7G021140 vs. ExPASy TrEMBL
Match: A0A0A0K715 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G176610 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.1e-30
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 1  MDLTQPSSDDEANEEEAMMRIVNDRDNVANPSIEREIRETSPYLDPLHHNNVNYEEATTP 60
          MDLTQPSSDDEANEEEAMMRIVNDRDNVANPSIEREIRETSPYLDPLHHNNVNYEEATTP
Sbjct: 1  MDLTQPSSDDEANEEEAMMRIVNDRDNVANPSIEREIRETSPYLDPLHHNNVNYEEATTP 60

Query: 61 LPSSQVIFPV 71
          LPSSQVIFPV
Sbjct: 61 LPSSQVIFPV 70

[Close]

BLAST of CsaV3_7G021140 vs. ExPASy TrEMBL
Match: A0A5A7UEP1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G004490 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 3.3e-09
Identity = 41/67 (61.19%), Postives = 46/67 (68.66%), Query Frame = 0


Query: 1  MDLTQPSSDDEANEEEAM-MRIVNDRDNVANPSIEREIRETSPYLDPLHHNNVNYEEATT 60
          MDLTQP SDDE NE EA+ +R             EREI+ETSP  D LHH+NV+YEEATT
Sbjct: 1  MDLTQPGSDDEENEGEALHLR-------------EREIKETSPLPDTLHHSNVDYEEATT 54

Query: 61 PLPSSQV 67
          PLPSS V
Sbjct: 61 PLPSSHV 54

[Close]

BLAST of CsaV3_7G021140 vs. ExPASy TrEMBL
Match: A0A5D3BZI8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G002220 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 3.3e-09
Identity = 41/67 (61.19%), Postives = 46/67 (68.66%), Query Frame = 0


Query: 1   MDLTQPSSDDEANEEEAM-MRIVNDRDNVANPSIEREIRETSPYLDPLHHNNVNYEEATT 60
           MDLTQP SDDE NE EA+ +R             EREI+ETSP  D LHH+NV+YEEATT
Sbjct: 126 MDLTQPGSDDEENEGEALHLR-------------EREIKETSPLPDTLHHSNVDYEEATT 179

Query: 61  PLPSSQV 67
           PLPSS V
Sbjct: 186 PLPSSHV 179

[Close]

BLAST of CsaV3_7G021140 vs. ExPASy TrEMBL
Match: A0A0A0LMZ0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G093830 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 8.9e-07
Identity = 27/33 (81.82%), Postives = 31/33 (93.94%), Query Frame = 0


Query: 34 EREIRETSPYLDPLHHNNVNYEEATTPLPSSQV 67
          EREIRETSPY DPLHHNN+++EEATTPLPS+ V
Sbjct: 9  EREIRETSPYSDPLHHNNMDFEEATTPLPSTHV 41

[Close]

BLAST of CsaV3_7G021140 vs. ExPASy TrEMBL
Match: A0A5A7SN98 (Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G00930 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 5.7e-06
Identity = 38/67 (56.72%), Postives = 43/67 (64.18%), Query Frame = 0


Query: 1  MDLTQPSSDDEANEEEAM-MRIVNDRDNVANPSIEREIRETSPYLDPLHHNNVNYEEATT 60
          MDLTQPSSDDE N+ EA+ +R             EREIRE SP  DPLH +NV+ EEATT
Sbjct: 1  MDLTQPSSDDEKNKGEALHLR-------------EREIREISPLPDPLHQSNVDCEEATT 54

Query: 61 PLPSSQV 67
          P  SS V
Sbjct: 61 PSLSSHV 54

The following BLAST results are available for this feature:

BLAST of CsaV3_7G021140 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44082.1	2.4e-30	100.00	hypothetical protein Csa_016717 [Cucumis sativus]	[more]
TYK04585.1	6.7e-09	61.19	hypothetical protein E5676_scaffold409G002220 [Cucumis melo var. makuwa]	[more]
KAA0051969.1	6.7e-09	61.19	hypothetical protein E6C27_scaffold60G004490 [Cucumis melo var. makuwa]	[more]
TYK17066.1	1.2e-05	56.72	Plant transposase [Cucumis melo var. makuwa]	[more]
KAA0032260.1	1.2e-05	56.72	Plant transposase [Cucumis melo var. makuwa]	[more]

BLAST of CsaV3_7G021140 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G021140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K715	1.1e-30	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G176610 PE=4 SV=1	[more]
A0A5A7UEP1	3.3e-09	61.19	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BZI8	3.3e-09	61.19	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LMZ0	8.9e-07	81.82	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G093830 PE=4 SV=1	[more]
A0A5A7SN98	5.7e-06	56.72	Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G00...	[more]

BLAST of CsaV3_7G021140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G021140.1	CsaV3_7G021140.1	mRNA