CsaV3_7G016250 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_7G016250
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	RAB6-interacting golgin
Location	chr7: 7992388 .. 7993841 (+)
RNA-Seq Expression	CsaV3_7G016250
Synteny	CsaV3_7G016250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGTAAAAGAGAAGGTTGAACTTCAGTTAACCCGTGCAGAGGAAGAAGCCAAACGGTTGGCACAAATTTGGGAAGTAAGTTTTATAATTAATCTTTCACGAAACGCATGTAAACAGAGTACAAGGTTTTAGCCTCTTTTGATCGCAGAATTATAATGTAAATTCTTATATTGATTTGAGTTAATTTATTTATGAAGAACAAAAGAATTAGTCTTATGTATGACAAAAGGTTCATGATTTTGAAAAGAAAAAAAAAAGACGACTTGAAATCAATAGGATCAACAAAATTTGTTCCTGGAATAATAACTGTAACGAGAGTGGAAAAAAGAACTCGAATTTCGGAATTATCACCAAAATTCGTCTCCTCCTTTTTCTCAGTTCATTATAAAATTTCAATCTTCTTCATTTTAAATTCAAACACATTAAGTGGAAATATGAAACTAACTTTTTACAAAGTGGATAAAAAAGATATATGGGAAACACCAAGAGCTATCCACAAAGAAAAAGATAGGGAAACATTAGAATCTAGATTAATGTATTTATAGTTTAGTTTGAACATCCAAGTTCGTGTTAATTTTCATGAGATTCTGTAAAACTATAATTACACTTTTCATTTGGGTACTCTTTCCAAAATTTATGGAAGACTGAAAAGGGATTTTTTTTAAAAAAAAACTAACCATGTAGACTAATTGTTAGATTAATCAATAGTCATGAACTAAATTTAAACATTTAAGTGAACATGAACTGAACACATTAAAAGATACGAGAACTAAATTAAAATTTCAACCCTAATTAAAAAAAACAACAATTATCATAGAATTGAATTTTGAGTTCTCGGATATGAAATAAAATCTCCAATGTAGAAAGAAATATGCATTTTTTTAAAAAAATACATGGAACATAACCAATGTTGTGGATGATCAAGGACTGGAGGTAATGGGAGATCCAATGGTAAGGAAGTTGGTAATGTGCAAAAAGAATTGACACAGTCAAGAGAGAACTGAAATCTCTGGGACAGATCTGCCAAAGAAGGTGCTGCTTCTTCCTCAATGAAAATAATTCTTTGATTTCTTATCAAGATTTCGTCTTCATTTGTCTAATTTTTTCAAAGCTAGATTTCTATTGATTTTATAACGCAAGTTTCAGGTATTAAAGGAAGATAGAAGTTGATTTTTTTTTTTTTTCTAACAGGAAAAAGAATACAAGGAAGTCCAGGATATATTCAACGAAAAAAGCAATGAGAAAGCTCAGCTGCTCGCTACACTAATGGAGGTATATAATTCTATAAAATCATTTGTAAATTTTCCTATATTTTATTGGCAACAAAAATATTTTCTTAAATTATCCATTTGTGCATATGGTCATGATCTTATCAGCTGTTGGGGCAGAGTGAGAAATGGAGGATGAAAAAGCTCGAGGAATTGAATAAGAATATAGAATCAATGAACTGA

mRNA sequence

ATGGAAGTAAAAGAGAAGGTTGAACTTCAGTTAACCCGTGCAGAGGAAGAAGCCAAACGGTTGGCACAAATTTGGGAAGAAAAAGAATACAAGGAAGTCCAGGATATATTCAACGAAAAAAGCAATGAGAAAGCTCAGCTGCTCGCTACACTAATGGAGCTGTTGGGGCAGAGTGAGAAATGGAGGATGAAAAAGCTCGAGGAATTGAATAAGAATATAGAATCAATGAACTGA

Coding sequence (CDS)

ATGGAAGTAAAAGAGAAGGTTGAACTTCAGTTAACCCGTGCAGAGGAAGAAGCCAAACGGTTGGCACAAATTTGGGAAGAAAAAGAATACAAGGAAGTCCAGGATATATTCAACGAAAAAAGCAATGAGAAAGCTCAGCTGCTCGCTACACTAATGGAGCTGTTGGGGCAGAGTGAGAAATGGAGGATGAAAAAGCTCGAGGAATTGAATAAGAATATAGAATCAATGAACTGA

Protein sequence

MEVKEKVELQLTRAEEEAKRLAQIWEEKEYKEVQDIFNEKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIESMN*

Homology

[Close]

BLAST of CsaV3_7G016250 vs. NCBI nr
Match: KAE8645963.1 (hypothetical protein Csa_018227 [Cucumis sativus])

HSP 1 Score: 142.9 bits (359), Expect = 1.2e-30
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MEVKEKVELQLTRAEEEAKRLAQIWEEKEYKEVQDIFNEKSNEKAQLLATLMELLGQSEK 60
          MEVKEKVELQLTRAEEEAKRLAQIWEEKEYKEVQDIFNEKSNEKAQLLATLMELLGQSEK
Sbjct: 1  MEVKEKVELQLTRAEEEAKRLAQIWEEKEYKEVQDIFNEKSNEKAQLLATLMELLGQSEK 60

Query: 61 WRMKKLEELNKNIESMN 78
          WRMKKLEELNKNIESMN
Sbjct: 61 WRMKKLEELNKNIESMN 77

[Close]

BLAST of CsaV3_7G016250 vs. NCBI nr
Match: XP_004150485.1 (uncharacterized protein LOC101217540 [Cucumis sativus] >KGN52204.1 hypothetical protein Csa_008287 [Cucumis sativus])

HSP 1 Score: 124.4 bits (311), Expect = 4.3e-25
Identity = 77/114 (67.54%), Postives = 77/114 (67.54%), Query Frame = 0


Query: 1   MEVKEKVELQLTRAEEEAKRLAQIWE---------------------------------- 60
           MEVKEKVELQLTRAEEEAKRLAQIWE                                  
Sbjct: 48  MEVKEKVELQLTRAEEEAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTVKRELKSLGQIC 107

Query: 61  ---EKEYKEVQDIFNEKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIESMN 78
              EKEYKEVQDIFNEKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIESMN
Sbjct: 108 QKKEKEYKEVQDIFNEKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIESMN 161

[Close]

BLAST of CsaV3_7G016250 vs. NCBI nr
Match: XP_008446775.1 (PREDICTED: uncharacterized protein LOC103489402 [Cucumis melo])

HSP 1 Score: 120.6 bits (301), Expect = 6.2e-24
Identity = 75/114 (65.79%), Postives = 75/114 (65.79%), Query Frame = 0


Query: 1   MEVKEKVELQLTRAEEEAKRLAQIWE---------------------------------- 60
           MEVKEKVE QLTRAEEEAKRLAQIWE                                  
Sbjct: 48  MEVKEKVEFQLTRAEEEAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTVKRELKSLGQIC 107

Query: 61  ---EKEYKEVQDIFNEKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIESMN 78
              EKEYKEVQDIFNEKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIES N
Sbjct: 108 QKKEKEYKEVQDIFNEKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIESTN 161

[Close]

BLAST of CsaV3_7G016250 vs. NCBI nr
Match: XP_038892385.1 (uncharacterized protein LOC120081508 [Benincasa hispida])

HSP 1 Score: 117.1 bits (292), Expect = 6.9e-23
Identity = 74/114 (64.91%), Postives = 74/114 (64.91%), Query Frame = 0


Query: 1   MEVKEKVELQLTRAEEEAKRLAQIWE---------------------------------- 60
           MEVKEKVE QLTRAEEEAKRLAQIWE                                  
Sbjct: 38  MEVKEKVEFQLTRAEEEAKRLAQIWEELEVMGDPMEKEVGNVRKRIDTVKRELKSLGQIC 97

Query: 61  ---EKEYKEVQDIFNEKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIESMN 78
              EKE KEVQDIFNEKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIES N
Sbjct: 98  QKKEKECKEVQDIFNEKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIESTN 151

[Close]

BLAST of CsaV3_7G016250 vs. NCBI nr
Match: KAA0034665.1 (uncharacterized protein E6C27_scaffold65G006840 [Cucumis melo var. makuwa] >TYK09216.1 uncharacterized protein E5676_scaffold475G002090 [Cucumis melo var. makuwa])

HSP 1 Score: 107.5 bits (267), Expect = 5.4e-20
Identity = 71/114 (62.28%), Postives = 71/114 (62.28%), Query Frame = 0


Query: 1   MEVKEKVELQLTRAEEEAKRLAQIWE---------------------------------- 60
           MEVKEKVE QLTRAEEEAKRLAQIWE                                  
Sbjct: 48  MEVKEKVEFQLTRAEEEAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTVKRELKSLGQIC 107

Query: 61  ---EKEYKEVQDIFNEKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIESMN 78
              EKEYKEVQDIFNEKSNEKAQLLATLME    SEKWRMKKLEELNKNIES N
Sbjct: 108 QKKEKEYKEVQDIFNEKSNEKAQLLATLME----SEKWRMKKLEELNKNIESTN 157

[Close]

BLAST of CsaV3_7G016250 vs. ExPASy TrEMBL
Match: A0A0A0KTG1 (RAB6-interacting golgin OS=Cucumis sativus OX=3659 GN=Csa_5G615265 PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.1e-25
Identity = 77/114 (67.54%), Postives = 77/114 (67.54%), Query Frame = 0


Query: 1   MEVKEKVELQLTRAEEEAKRLAQIWE---------------------------------- 60
           MEVKEKVELQLTRAEEEAKRLAQIWE                                  
Sbjct: 48  MEVKEKVELQLTRAEEEAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTVKRELKSLGQIC 107

Query: 61  ---EKEYKEVQDIFNEKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIESMN 78
              EKEYKEVQDIFNEKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIESMN
Sbjct: 108 QKKEKEYKEVQDIFNEKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIESMN 161

[Close]

BLAST of CsaV3_7G016250 vs. ExPASy TrEMBL
Match: A0A1S3BFW5 (RAB6-interacting golgin OS=Cucumis melo OX=3656 GN=LOC103489402 PE=3 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 3.0e-24
Identity = 75/114 (65.79%), Postives = 75/114 (65.79%), Query Frame = 0


Query: 1   MEVKEKVELQLTRAEEEAKRLAQIWE---------------------------------- 60
           MEVKEKVE QLTRAEEEAKRLAQIWE                                  
Sbjct: 48  MEVKEKVEFQLTRAEEEAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTVKRELKSLGQIC 107

Query: 61  ---EKEYKEVQDIFNEKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIESMN 78
              EKEYKEVQDIFNEKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIES N
Sbjct: 108 QKKEKEYKEVQDIFNEKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIESTN 161

[Close]

BLAST of CsaV3_7G016250 vs. ExPASy TrEMBL
Match: A0A5D3CFS0 (RAB6-interacting golgin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002090 PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 2.6e-20
Identity = 71/114 (62.28%), Postives = 71/114 (62.28%), Query Frame = 0


Query: 1   MEVKEKVELQLTRAEEEAKRLAQIWE---------------------------------- 60
           MEVKEKVE QLTRAEEEAKRLAQIWE                                  
Sbjct: 48  MEVKEKVEFQLTRAEEEAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTVKRELKSLGQIC 107

Query: 61  ---EKEYKEVQDIFNEKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIESMN 78
              EKEYKEVQDIFNEKSNEKAQLLATLME    SEKWRMKKLEELNKNIES N
Sbjct: 108 QKKEKEYKEVQDIFNEKSNEKAQLLATLME----SEKWRMKKLEELNKNIESTN 157

[Close]

BLAST of CsaV3_7G016250 vs. ExPASy TrEMBL
Match: A0A6J1D8N9 (RAB6-interacting golgin OS=Momordica charantia OX=3673 GN=LOC111018644 PE=3 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.0e-19
Identity = 66/112 (58.93%), Postives = 72/112 (64.29%), Query Frame = 0


Query: 1   MEVKEKVELQLTRAEEEAKRLAQIWE---------------------------------- 60
           MEV+EKVELQL+RAEEEAKRLAQIWE                                  
Sbjct: 48  MEVREKVELQLSRAEEEAKRLAQIWEELKVMVDPMRKEVGNVRKRIDTVKRELKSLGQIC 107

Query: 61  ---EKEYKEVQDIFNEKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIES 76
              EKEYKE  +IFNEKSNEKAQLLA LMELLGQSE+WRM+KLEEL+KNIES
Sbjct: 108 QKKEKEYKETLEIFNEKSNEKAQLLAALMELLGQSERWRMEKLEELSKNIES 159

[Close]

BLAST of CsaV3_7G016250 vs. ExPASy TrEMBL
Match: A0A6J1HV92 (RAB6-interacting golgin OS=Cucurbita maxima OX=3661 GN=LOC111467754 PE=3 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.9e-18
Identity = 65/114 (57.02%), Postives = 70/114 (61.40%), Query Frame = 0


Query: 1   MEVKEKVELQLTRAEEEAKRLAQIWE---------------------------------- 60
           MEVKEKVELQL+RAEEEAKRLAQIWE                                  
Sbjct: 49  MEVKEKVELQLSRAEEEAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTAKKELKSLGQIC 108

Query: 61  ---EKEYKEVQDIFNEKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIESMN 78
              EKEYKEV +IFNEK+NEKAQLL TLMELL QSE+WRM KLEELNK+I   N
Sbjct: 109 QKKEKEYKEVLEIFNEKTNEKAQLLTTLMELLDQSERWRMNKLEELNKHIALTN 162

[Close]

BLAST of CsaV3_7G016250 vs. TAIR 10
Match: AT3G09980.1 (Family of unknown function (DUF662) )

HSP 1 Score: 72.8 bits (177), Expect = 1.4e-13
Identity = 49/114 (42.98%), Postives = 63/114 (55.26%), Query Frame = 0


Query: 1   MEVKEKVELQLTRAEEEAKRLAQIWE---------------------------------- 60
           ME++E+V+ QL R EEE KRLA I E                                  
Sbjct: 65  MEIRERVQAQLGRVEEETKRLALIREELEGLADPMRKEVAMVRKKIDSVNKELKPLGHTV 124

Query: 61  ---EKEYKEVQDIFNEKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIESMN 78
              E+EYKE  + FNEK+ EK QL+  LMEL+G+SEK RMKKLEEL+KNI+S++
Sbjct: 125 QKKEREYKEALEAFNEKNREKVQLITRLMELVGESEKMRMKKLEELSKNIDSIH 178

[Close]

BLAST of CsaV3_7G016250 vs. TAIR 10
Match: AT5G03660.2 (Family of unknown function (DUF662) )

HSP 1 Score: 70.9 bits (172), Expect = 5.3e-13
Identity = 43/89 (48.31%), Postives = 58/89 (65.17%), Query Frame = 0


Query: 1   MEVKEKVELQLTRAEEEAKRLAQIWE---------------EKEYKEVQDIFNEKSNEKA 60
           ME++E+V+ QL R E+E+KRLA I E               E EYK+  + FNEK+ EK 
Sbjct: 59  MEIRERVQAQLGRVEDESKRLAMIREELEGFADPMRKEVTMETEYKDALEAFNEKNKEKV 118

Query: 61  QLLATLMELLGQSEKWRMKKLEELNKNIE 75
           +L+  L EL G+SEK+R KKLEEL+KNI+
Sbjct: 119 ELITKLQELEGESEKFRFKKLEELSKNID 147

[Close]

BLAST of CsaV3_7G016250 vs. TAIR 10
Match: AT2G36410.2 (Family of unknown function (DUF662) )

HSP 1 Score: 67.0 bits (162), Expect = 7.6e-12
Identity = 46/113 (40.71%), Postives = 61/113 (53.98%), Query Frame = 0


Query: 1   MEVKEKVELQLTRAEEEAKRLAQIWE---------------------------------- 60
           MEV+E+++ QL R E+E KRL+ I E                                  
Sbjct: 80  MEVRERIQAQLGRVEQETKRLSTIREELESMADPMRKEVSVVRKKIDSVNKELKPLGSTV 139

Query: 61  ---EKEYKEVQDIFNEKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIESM 77
              E+EYKE  D FNEK+ EK QL+  LMEL+G+SEK RM KLEEL+K+IE++
Sbjct: 140 QKKEREYKEALDTFNEKNREKVQLITKLMELVGESEKLRMIKLEELSKSIETV 192

[Close]

BLAST of CsaV3_7G016250 vs. TAIR 10
Match: AT3G52920.2 (Family of unknown function (DUF662) )

HSP 1 Score: 66.6 bits (161), Expect = 9.9e-12
Identity = 45/112 (40.18%), Postives = 61/112 (54.46%), Query Frame = 0


Query: 1   MEVKEKVELQLTRAEEEAKRLAQIWE---------------------------------- 60
           MEV+E+V+ QL R EEE +RLA I E                                  
Sbjct: 51  MEVRERVKAQLGRVEEETRRLASIREELETMADPMRKEVNWVRKKIDSVNKELKPLGSTV 110

Query: 61  ---EKEYKEVQDIFNEKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIES 76
              E+EYKE  D FNEK+ EK QL+  LMEL+G+SEK R+KKL+EL+++I++
Sbjct: 111 QKKEREYKEALDTFNEKNREKVQLITKLMELVGESEKLRLKKLDELSRSIDT 162

[Close]

BLAST of CsaV3_7G016250 vs. TAIR 10
Match: AT2G36410.3 (Family of unknown function (DUF662) )

HSP 1 Score: 65.9 bits (159), Expect = 1.7e-11
Identity = 46/113 (40.71%), Postives = 60/113 (53.10%), Query Frame = 0


Query: 1   MEVKEKVELQLTRAEEEAKRLAQIWEE--------------------------------- 60
           MEV+E+++ QL R E+E KRL+ I EE                                 
Sbjct: 80  MEVRERIQAQLGRVEQETKRLSTIREELESMADPMRKEVSVVRKKIDSVNKELKPLGSTV 139

Query: 61  ----KEYKEVQDIFNEKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIESM 77
                EYKE  D FNEK+ EK QL+  LMEL+G+SEK RM KLEEL+K+IE++
Sbjct: 140 QKKVMEYKEALDTFNEKNREKVQLITKLMELVGESEKLRMIKLEELSKSIETV 192

The following BLAST results are available for this feature:

BLAST of CsaV3_7G016250 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8645963.1	1.2e-30	100.00	hypothetical protein Csa_018227 [Cucumis sativus]	[more]
XP_004150485.1	4.3e-25	67.54	uncharacterized protein LOC101217540 [Cucumis sativus] >KGN52204.1 hypothetical ...	[more]
XP_008446775.1	6.2e-24	65.79	PREDICTED: uncharacterized protein LOC103489402 [Cucumis melo]	[more]
XP_038892385.1	6.9e-23	64.91	uncharacterized protein LOC120081508 [Benincasa hispida]	[more]
KAA0034665.1	5.4e-20	62.28	uncharacterized protein E6C27_scaffold65G006840 [Cucumis melo var. makuwa] >TYK0...	[more]

BLAST of CsaV3_7G016250 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G016250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KTG1	2.1e-25	67.54	RAB6-interacting golgin OS=Cucumis sativus OX=3659 GN=Csa_5G615265 PE=3 SV=1	[more]
A0A1S3BFW5	3.0e-24	65.79	RAB6-interacting golgin OS=Cucumis melo OX=3656 GN=LOC103489402 PE=3 SV=1	[more]
A0A5D3CFS0	2.6e-20	62.28	RAB6-interacting golgin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1D8N9	1.0e-19	58.93	RAB6-interacting golgin OS=Momordica charantia OX=3673 GN=LOC111018644 PE=3 SV=1	[more]
A0A6J1HV92	1.9e-18	57.02	RAB6-interacting golgin OS=Cucurbita maxima OX=3661 GN=LOC111467754 PE=3 SV=1	[more]

BLAST of CsaV3_7G016250 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G09980.1	1.4e-13	42.98	Family of unknown function (DUF662)	[more]
AT5G03660.2	5.3e-13	48.31	Family of unknown function (DUF662)	[more]
AT2G36410.2	7.6e-12	40.71	Family of unknown function (DUF662)	[more]
AT3G52920.2	9.9e-12	40.18	Family of unknown function (DUF662)	[more]
AT2G36410.3	1.7e-11	40.71	Family of unknown function (DUF662)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 4..24
None	No IPR available	PANTHER	PTHR21470:SF3	RAB6-INTERACTING GOLGIN (DUF662)	coord: 27..76 coord: 1..27
IPR007033	RAB6-interacting golgin	PFAM	PF04949	Transcrip_act	coord: 27..75 e-value: 4.3E-18 score: 65.7 coord: 1..29 e-value: 2.0E-7 score: 31.0
IPR007033	RAB6-interacting golgin	PANTHER	PTHR21470	RAB6-INTERACTING PROTEIN GORAB	coord: 27..76 coord: 1..27

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G016250.1	CsaV3_7G016250.1	mRNA