CsaV3_7G011280 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_7G011280
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Transposase
Location	chr7: 5970510 .. 5970677 (+)
RNA-Seq Expression	CsaV3_7G011280
Synteny	CsaV3_7G011280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GATGTCTCAACAGTTCGGTATCATCTGTATGCCAATGGAATTGATAAGAGTTACAAGGTATGGTTCTGGCATGGTGAAGAATTGAACTCAGATAACGTTGCCAACACGATGGAAACTACAGTGGATGAAACTGATGAAAACGACGATTTATTTAATACAATTAATATG

mRNA sequence

GATGTCTCAACAGTTCGGTATCATCTGTATGCCAATGGAATTGATAAGAGTTACAAGGTATGGTTCTGGCATGGTGAAGAATTGAACTCAGATAACGTTGCCAACACGATGGAAACTACAGTGGATGAAACTGATGAAAACGACGATTTATTTAATACAATTAATATG

Coding sequence (CDS)

GATGTCTCAACAGTTCGGTATCATCTGTATGCCAATGGAATTGATAAGAGTTACAAGGTATGGTTCTGGCATGGTGAAGAATTGAACTCAGATAACGTTGCCAACACGATGGAAACTACAGTGGATGAAACTGATGAAAACGACGATTTATTTAATACAATTAATATG

Protein sequence

DVSTVRYHLYANGIDKSYKVWFWHGEELNSDNVANTMETTVDETDENDDLFNTINM

Homology

[Close]

BLAST of CsaV3_7G011280 vs. NCBI nr
Match: XP_031744671.1 (uncharacterized protein LOC116405112 [Cucumis sativus])

HSP 1 Score: 119.0 bits (297), Expect = 1.3e-23
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1   DVSTVRYHLYANGIDKSYKVWFWHGEELNSDNVANTMETTVDETDENDDLFNTINM 57
           DVSTVRYHLYANGIDKSYKVWFWHGEELNSDNVANTMETTVDETDENDDLFNTINM
Sbjct: 50  DVSTVRYHLYANGIDKSYKVWFWHGEELNSDNVANTMETTVDETDENDDLFNTINM 105

[Close]

BLAST of CsaV3_7G011280 vs. NCBI nr
Match: XP_031742398.1 (uncharacterized protein LOC116404339 [Cucumis sativus])

HSP 1 Score: 119.0 bits (297), Expect = 1.3e-23
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1   DVSTVRYHLYANGIDKSYKVWFWHGEELNSDNVANTMETTVDETDENDDLFNTINM 57
           DVSTVRYHLYANGIDKSYKVWFWHGEELNSDNVANTMETTVDETDENDDLFNTINM
Sbjct: 50  DVSTVRYHLYANGIDKSYKVWFWHGEELNSDNVANTMETTVDETDENDDLFNTINM 105

[Close]

BLAST of CsaV3_7G011280 vs. NCBI nr
Match: XP_031744682.1 (uncharacterized protein LOC116405119 [Cucumis sativus])

HSP 1 Score: 119.0 bits (297), Expect = 1.3e-23
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1   DVSTVRYHLYANGIDKSYKVWFWHGEELNSDNVANTMETTVDETDENDDLFNTINM 57
           DVSTVRYHLYANGIDKSYKVWFWHGEELNSDNVANTMETTVDETDENDDLFNTINM
Sbjct: 50  DVSTVRYHLYANGIDKSYKVWFWHGEELNSDNVANTMETTVDETDENDDLFNTINM 105

[Close]

BLAST of CsaV3_7G011280 vs. NCBI nr
Match: XP_031741700.1 (uncharacterized protein LOC116403896 [Cucumis sativus])

HSP 1 Score: 119.0 bits (297), Expect = 1.3e-23
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1   DVSTVRYHLYANGIDKSYKVWFWHGEELNSDNVANTMETTVDETDENDDLFNTINM 57
           DVSTVRYHLYANGIDKSYKVWFWHGEELNSDNVANTMETTVDETDENDDLFNTINM
Sbjct: 50  DVSTVRYHLYANGIDKSYKVWFWHGEELNSDNVANTMETTVDETDENDDLFNTINM 105

[Close]

BLAST of CsaV3_7G011280 vs. NCBI nr
Match: KAE8645896.1 (hypothetical protein Csa_011857, partial [Cucumis sativus])

HSP 1 Score: 119.0 bits (297), Expect = 1.3e-23
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1  DVSTVRYHLYANGIDKSYKVWFWHGEELNSDNVANTMETTVDETDENDDLFNTINM 57
          DVSTVRYHLYANGIDKSYKVWFWHGEELNSDNVANTMETTVDETDENDDLFNTINM
Sbjct: 1  DVSTVRYHLYANGIDKSYKVWFWHGEELNSDNVANTMETTVDETDENDDLFNTINM 56

[Close]

BLAST of CsaV3_7G011280 vs. ExPASy TrEMBL
Match: A0A5D3E2B2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold64G00410 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 4.8e-16
Identity = 42/56 (75.00%), Postives = 47/56 (83.93%), Query Frame = 0


Query: 1   DVSTVRYHLYANGIDKSYKVWFWHGEELNSDNVANTMETTVDETDENDDLFNTINM 57
           DVS VRYHLYANGIDKSYK+WFWHGE+LNS+ V + ME  VDE  E DDLFNT+NM
Sbjct: 50  DVSIVRYHLYANGIDKSYKIWFWHGEDLNSETVTSKMENIVDEKYEQDDLFNTVNM 105

[Close]

BLAST of CsaV3_7G011280 vs. ExPASy TrEMBL
Match: A0A5A7TBU6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G001530 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 6.3e-16
Identity = 41/56 (73.21%), Postives = 49/56 (87.50%), Query Frame = 0


Query: 1   DVSTVRYHLYANGIDKSYKVWFWHGEELNSDNVANTMETTVDETDENDDLFNTINM 57
           DVS VRYHLYA+GIDKSYK+WFWHGE+LNS+ V++ ME T DE  E+DDLFNT+NM
Sbjct: 49  DVSIVRYHLYASGIDKSYKIWFWHGEDLNSETVSSKMENTADEKYEHDDLFNTVNM 104

[Close]

BLAST of CsaV3_7G011280 vs. ExPASy TrEMBL
Match: A0A5A7TX96 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G001670 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.1e-15
Identity = 41/56 (73.21%), Postives = 49/56 (87.50%), Query Frame = 0


Query: 1   DVSTVRYHLYANGIDKSYKVWFWHGEELNSDNVANTMETTVDETDENDDLFNTINM 57
           DVS VRYHLYANGIDKSYK+W WHGE+LNS+ V++ ME TVDE  E+D+LFNT+NM
Sbjct: 50  DVSIVRYHLYANGIDKSYKIWLWHGEDLNSETVSSKMENTVDEKYEHDNLFNTVNM 105

[Close]

BLAST of CsaV3_7G011280 vs. ExPASy TrEMBL
Match: A0A5D3DSZ9 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold7319G00190 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.1e-15
Identity = 42/56 (75.00%), Postives = 46/56 (82.14%), Query Frame = 0


Query: 1   DVSTVRYHLYANGIDKSYKVWFWHGEELNSDNVANTMETTVDETDENDDLFNTINM 57
           DVS VRYHLYANGIDKSYK+WFWHGE+LNS  V + ME  VDE  E DDLFNT+NM
Sbjct: 50  DVSIVRYHLYANGIDKSYKIWFWHGEDLNSKTVTSKMENIVDEKYEQDDLFNTVNM 105

[Close]

BLAST of CsaV3_7G011280 vs. ExPASy TrEMBL
Match: A0A5A7UJD4 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold522G00870 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.4e-15
Identity = 41/56 (73.21%), Postives = 46/56 (82.14%), Query Frame = 0


Query: 1   DVSTVRYHLYANGIDKSYKVWFWHGEELNSDNVANTMETTVDETDENDDLFNTINM 57
           DVS VRYHLYANGIDKSYK+WFWHGE+LN + V + ME  VDE  E DDLFNT+NM
Sbjct: 50  DVSIVRYHLYANGIDKSYKIWFWHGEDLNLETVTSKMENIVDEKYEQDDLFNTVNM 105

The following BLAST results are available for this feature:

BLAST of CsaV3_7G011280 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031744671.1	1.3e-23	100.00	uncharacterized protein LOC116405112 [Cucumis sativus]	[more]
XP_031742398.1	1.3e-23	100.00	uncharacterized protein LOC116404339 [Cucumis sativus]	[more]
XP_031744682.1	1.3e-23	100.00	uncharacterized protein LOC116405119 [Cucumis sativus]	[more]
XP_031741700.1	1.3e-23	100.00	uncharacterized protein LOC116403896 [Cucumis sativus]	[more]
KAE8645896.1	1.3e-23	100.00	hypothetical protein Csa_011857, partial [Cucumis sativus]	[more]

BLAST of CsaV3_7G011280 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G011280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E2B2	4.8e-16	75.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TBU6	6.3e-16	73.21	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7TX96	1.1e-15	73.21	Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G001670 P...	[more]
A0A5D3DSZ9	1.1e-15	75.00	Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold7319G00190 P...	[more]
A0A5A7UJD4	2.4e-15	73.21	Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold522G00870 PE...	[more]

BLAST of CsaV3_7G011280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G011280.1	CsaV3_7G011280.1	mRNA