CsaV3_7G008550 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_7G008550
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Cold regulated protein 27, putative isoform 2
Location	chr7: 5307524 .. 5311404 (+)
RNA-Seq Expression	CsaV3_7G008550
Synteny	CsaV3_7G008550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTCACCGCTTCTCTCTCTCTCTCTCTCTCCCTCTCCATTTCTCCACGAGCTTGAATCCCCAGAGGGTTTCGGACCTAAATTTTCTCCCACCATTTCAATTTTCTCTTTGATTTCATCCTCCATTTTTGGCTCTTCCGAATCGTTTCTCCTTCTTTTTGATCCCTCCGAAATGGGTGACTCTCATACGCCGTCGTTTCTCTCCCCGCCGCTTGCAGATCGACAATCACCCATGCCGCTGGCCTCTGCTACTACCGACTCCACTGGCTTCAACTCGGAATCTCACTCTTCTTCCATTACTCTTGATGGGTCCAAGCATTTTTTCGATTCTCATCATTGTTCGCAACTGGATGCGGTAAATTGTGATTCTATCCTTTTTGGCAGGCTTGATTTTTGTTTTTGTTTTTTTTTCCCCTCGGTACGAACGAGTTGTTTGCGGATTTTACTTTTGTTCCCTCTTTGAATGTAGCGTTAGGAGAGGACTAGGAGATCGTGTGACCTTTTCTTTGCTTTCTTGAAACTTATATGTCTGATTATAAGTGATTCTGTTGCTTTTGTGGCGCCTTTAGAAATTTAATGGTAAAGTGGTTTTTGGGTATCTCCCATTTGGAGTTATGAAACTTGCAAGACAGTGGAGGTGTTTATGTACTTGCTTATAACTGGAGTTTCAGTTCCGTGTCTTTACCTTTTTTCTGTTTATTAATCCCCTTTTTCACCTTTGCGATTCAATGGCTGTGGAGAAGAAATTCTTTTTGCAATGTTTGATTTATTATTTATCTTTTCCGTTTGTATCCGTGTTTAGTGTTTATGTGTATTAATTAGGTCGTGTTTGTTTTTGTTATCTATTTGGTTTTTGGTTTTTAATTTTTGACAACTAAGCCTATACACTTTCTTTTACCTCTACTTTTTATCAATGTTTTCAAAATCAGGCCAAATTATCGAGTGTTGAATGATTTCATTAAATTATAGATCAAAGTCACGTCTTTTAAAATTTTAGTTAATGGAAATGATTTCTCAATTGAATTCTTGTGAACAGGAGCAAACACATTGGACAGACGAGAAACATAGATTATATCTTGATTCTTTAGAAGCATCTTTTGTCCAAGATTTGCATCAACATAGGCCTATGCATGCTTTATCCCCAAAACAGAAGATGCGTCGGAAGCCGATCAGGCCTGATATATCTTCTTCAGAGGTGAGGCAACACATCCACAAAAAGAGTGGGAGTGAGTTTCCTATCTCATTCCTCTACCTTCTTAATGATTTCCTCTTGTTATATGTTTCTTTTTTAGTTGATGGTCCTTCAAGATGCCTCTTGGCAGAAGGCTAACATTGGGAGGAATGATCCTTTATTGGATAAGACTGCTGATTCTCCTGCTATTTTAGAGGATCTATGGATAAATCATTTTCCTTCTGCAGGAAAGCAGTGTAGTTTGGAAACTCCTGATCTCCTTGAAGAATGTGAAAGTTGTAGTGATAGGAGACACATAAGATACATGACGAACTCCTGTAGATCTGCCAGAAATTCTCAGCCGACCCGTCCATGCTGTTGTAATTCTTATACAATCATTACAGGTAATTTGATCAGTGCCATATGTTCTTGAAAGTTTCTCTTCTAGAATTTTCATCTCTTTTATGTAGTTGGTTGGGTTCTTTATGTACTCTTTTCTTATGTCTGAGTGGTATCCAATCTACCCCTCAATCTCCTCTTGTAGACACACCTGAACACATCGTTCATGTTTACCAAACCCCTTACTGGAGAAAGTTTTCCAGACTCTCACTTTTTGTTGAAGACCTTCTAATATACTAAAATTTGTAATCTATATTCTCAATACTCATTATGCATGTACATTAACTGTGAATTGCGGTCTTCCAATCATATTTTGTAATGGTGAAGGTTTTAACTTTTGCAATAATTATTTTGGCTGTAGTATTTCCCTCTAGCACCATTTAGATGCACTCACTTTTCTGATTTAATTTTGTGTTGGTGTACCAATATGACCATCACTTTGTGATGTTCCCACCTGGCACGCCACAGTACTGCATCAGTTGAAGTTTTGCAAATCTTCTTTCCAAAATTATCACGTGTTTGCCTAAACTTTGTGTTCTCCAAATGTATGTCTTGAGCATGTGAGTTGTAAAATCTGTAAGTGAATCTTAGGATATTGTGTTATCTTCTTAGCATTGGAAATTCTACATGCTTTGATATATTAATTGGATAGTTTCAACGGTTTTCAGTGTTGTTATAGCTTTGTTCCCATAGCATGTTTTTAGTGTTTACAGATGCACACCAGGGTTACAAGATTTAATGTCATACTTCTTCATGTTATATTTCAATTAAGAATTCATGTTCTCACTGATTGCATATCTTATTCATTTGAAGACGTTCGATGAGTTAGTGGAAAAGTACAAATCCTTTCTTTAAAGTTAAATGAGCACTTGTGTGCATTGTATCAGTGGAAGAAACAATTAAAACTGAGTAGACATGTCTGGGATAGTGGGATGGACTGCATTATGGATACTGATGAACTACTAGATGAAGCTAGGCTGATGTTACTAATTTTAGGACAGTAGCTGTTTAGGAATGAATCAAAACAGAAAATCTTGGGATGATAAGATTTTGGTCAACTTAGAGGAGCCACGAGGCATACAGAACTATCCTTCTTTAATGAATGAAAATGATTCCGACAGACAGAGCTACTTCAATATTGGAGTTGAACCAAAAGAAAAGAGCAGTTGTGGTTGTGGTGACACTCCAACATGTCTCAATCAGTGAGATTCTCATAAAGATTTCTATTTCCCCTTTGAATATGTATAAATGTTCCGGAAGAGTAGAAAACCTGCTGCAGAATAATTTTATTGTTATTCATAATTCTGCAAGAAATAACAAATAGATGCTTTAAAGAGAACAATGTTTGTTTAATCAAAGGACGAGATGCCAAAGGGAAAGTTCTTCCTTTCTCATCTTAGGTGCATGCTGCTACCACACTTCCTGTTGAAGAAGTCTCCCTGACATAGCTTGGAATTTAAAAAAAATATCAATTTCATAAGATTCATAATTTGGAAATAATTGATGCTACATACGTTATTGCTACCATTGCAAAGTTTAATGTGATTTTCCTGTTGCAAACTAATTTGGTGTCTTTTATCTCTTCATTTTGTCTTCTATGCAGAAGTTTCAGATCAAAACTTTGTGGATAATCAACCAGGAGAGTTGTCTAGTGGCATGCCTATTGCAAAAAGATTAAAGAAAGCTTCTTCTGATTTTTCAGACAGTGCCCAGGTTAATCATGGGACTACCTTAGACTTTTCTTTAGATATCTTATAATTTCATCATCTAAATGATCTGAGACTGATATGCTGCTATTAATCTCTTAGGTTGTACCATTTAAAAGATTATCCTAAAAAAGATAAAAAACCAGATGGCATATCTTCTGAGCATCTTCAAAACTTTGTGCCTCCAAATTCAGATTTGTGTTACTGCGTAAGAGGGAGCGACAACAATTCATTCCAACATGTGAACAGCCAGATTTGTGATACGGTTTTGTTTTCATTTCAGAAGAGCATTGTAAAGAAAGTAAGGAAAGTGACAACAATAATTTTACCAGAAGATCTGCGGCAGTAAGGAGAAAATATGTTTGTATATGGTACAAGCTAAACTTTTACGTAGTTCAAATATTGAGTGAAATACATGTTGACCCTATCTTTTCTCCTGGTTTCCTTTTTCTTGGAGTTTAAAAGGATGGAAATTCTACAACTAGATGTAGGGAAAGAATATACATGCTATAGAGAAGCTAGACACCCTGATAGTGAGATAGATACACAACCTTTTTAAATTTGTTTGAAATACTCCCATTATTAAGTTTTGTTAGAAACCTCAAG

mRNA sequence

ATGGGTGACTCTCATACGCCGTCGTTTCTCTCCCCGCCGCTTGCAGATCGACAATCACCCATGCCGCTGGCCTCTGCTACTACCGACTCCACTGGCTTCAACTCGGAATCTCACTCTTCTTCCATTACTCTTGATGGGTCCAAGCATTTTTTCGATTCTCATCATTGTTCGCAACTGGATGCGGAGCAAACACATTGGACAGACGAGAAACATAGATTATATCTTGATTCTTTAGAAGCATCTTTTGTCCAAGATTTGCATCAACATAGGCCTATGCATGCTTTATCCCCAAAACAGAAGATGCGTCGGAAGCCGATCAGGCCTGATATATCTTCTTCAGAGGTGAGGCAACACATCCACAAAAAGAGTGGGAGAAAGCAGTGTAGTTTGGAAACTCCTGATCTCCTTGAAGAATGTGAAAGTTGTAGTGATAGGAGACACATAAGATACATGACGAACTCCTGTAGATCTGCCAGAAATTCTCAGCCGACCCGTCCATGCTGTTGTAATTCTTATACAATCATTACAGAAGTTTCAGATCAAAACTTTGTGGATAATCAACCAGGAGAGTTGTCTAGTGGCATGCCTATTGCAAAAAGATTAAAGAAAGCTTCTTCTGATTTTTCAGACAGTGCCCAGGTTGTACCATTTAAAAGATTATCCTAA

Coding sequence (CDS)

ATGGGTGACTCTCATACGCCGTCGTTTCTCTCCCCGCCGCTTGCAGATCGACAATCACCCATGCCGCTGGCCTCTGCTACTACCGACTCCACTGGCTTCAACTCGGAATCTCACTCTTCTTCCATTACTCTTGATGGGTCCAAGCATTTTTTCGATTCTCATCATTGTTCGCAACTGGATGCGGAGCAAACACATTGGACAGACGAGAAACATAGATTATATCTTGATTCTTTAGAAGCATCTTTTGTCCAAGATTTGCATCAACATAGGCCTATGCATGCTTTATCCCCAAAACAGAAGATGCGTCGGAAGCCGATCAGGCCTGATATATCTTCTTCAGAGGTGAGGCAACACATCCACAAAAAGAGTGGGAGAAAGCAGTGTAGTTTGGAAACTCCTGATCTCCTTGAAGAATGTGAAAGTTGTAGTGATAGGAGACACATAAGATACATGACGAACTCCTGTAGATCTGCCAGAAATTCTCAGCCGACCCGTCCATGCTGTTGTAATTCTTATACAATCATTACAGAAGTTTCAGATCAAAACTTTGTGGATAATCAACCAGGAGAGTTGTCTAGTGGCATGCCTATTGCAAAAAGATTAAAGAAAGCTTCTTCTGATTTTTCAGACAGTGCCCAGGTTGTACCATTTAAAAGATTATCCTAA

Protein sequence

MGDSHTPSFLSPPLADRQSPMPLASATTDSTGFNSESHSSSITLDGSKHFFDSHHCSQLDAEQTHWTDEKHRLYLDSLEASFVQDLHQHRPMHALSPKQKMRRKPIRPDISSSEVRQHIHKKSGRKQCSLETPDLLEECESCSDRRHIRYMTNSCRSARNSQPTRPCCCNSYTIITEVSDQNFVDNQPGELSSGMPIAKRLKKASSDFSDSAQVVPFKRLS*

Homology

[Close]

BLAST of CsaV3_7G008550 vs. NCBI nr
Match: XP_011658902.1 (cold-regulated protein 28 isoform X2 [Cucumis sativus] >KAE8645863.1 hypothetical protein Csa_017049 [Cucumis sativus])

HSP 1 Score: 444.9 bits (1143), Expect = 4.1e-121
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 0


Query: 1   MGDSHTPSFLSPPLADRQSPMPLASATTDSTGFNSESHSSSITLDGSKHFFDSHHCSQLD 60
           MGDSHTPSFLSPPLADRQSPMPLASATTDSTGFNSESHSSSITLDGSKHFFDSHHCSQLD
Sbjct: 1   MGDSHTPSFLSPPLADRQSPMPLASATTDSTGFNSESHSSSITLDGSKHFFDSHHCSQLD 60

Query: 61  AEQTHWTDEKHRLYLDSLEASFVQDLHQHRPMHALSPKQKMRRKPIRPDISSSEVRQHIH 120
           AEQTHWTDEKHRLYLDSLEASFVQDLHQHRPMHALSPKQKMRRKPIRPDISSSEVRQHIH
Sbjct: 61  AEQTHWTDEKHRLYLDSLEASFVQDLHQHRPMHALSPKQKMRRKPIRPDISSSEVRQHIH 120

Query: 121 KKSGRKQCSLETPDLLEECESCSDRRHIRYMTNSCRSARNSQPTRPCCCNSYTIITEVSD 180
           KKSGRKQCSLETPDLLEECESCSDRRHIRYMTNSCRSARNSQPTRPCCCNSYTIITEVSD
Sbjct: 121 KKSGRKQCSLETPDLLEECESCSDRRHIRYMTNSCRSARNSQPTRPCCCNSYTIITEVSD 180

Query: 181 QNFVDNQPGELSSGMPIAKRLKKASSDFSDSAQVVPFKRLS 222
           QNFVDNQPGELSSGMPIAKRLKKASSDFSDSAQVVPFKRLS
Sbjct: 181 QNFVDNQPGELSSGMPIAKRLKKASSDFSDSAQVVPFKRLS 221

[Close]

BLAST of CsaV3_7G008550 vs. NCBI nr
Match: XP_004136978.1 (cold-regulated protein 27 isoform X1 [Cucumis sativus])

HSP 1 Score: 406.4 bits (1043), Expect = 1.6e-109
Identity = 213/253 (84.19%), Postives = 216/253 (85.38%), Query Frame = 0


Query: 1   MGDSHTPSFLSPPLADRQSPMPLASATTDSTGFNSESHSSSITLDGSKHFFDSHHCSQLD 60
           MGDSHTPSFLSPPLADRQSPMPLASATTDSTGFNSESHSSSITLDGSKHFFDSHHCSQLD
Sbjct: 1   MGDSHTPSFLSPPLADRQSPMPLASATTDSTGFNSESHSSSITLDGSKHFFDSHHCSQLD 60

Query: 61  AEQTHWTDEKHRLYLDSLEASFVQDLHQHRPMHALSPKQKMRRKPIRPDISSSEV----- 120
           AEQTHWTDEKHRLYLDSLEASFVQDLHQHRPMHALSPKQKMRRKPIRPDISSSE+     
Sbjct: 61  AEQTHWTDEKHRLYLDSLEASFVQDLHQHRPMHALSPKQKMRRKPIRPDISSSELMVLQD 120

Query: 121 ----RQHI-----------------------HKKSGRKQCSLETPDLLEECESCSDRRHI 180
               + +I                       H  S  KQCSLETPDLLEECESCSDRRHI
Sbjct: 121 ASWQKANIGRNDPLLDKTADSPAILEDLWINHFPSAGKQCSLETPDLLEECESCSDRRHI 180

Query: 181 RYMTNSCRSARNSQPTRPCCCNSYTIITEVSDQNFVDNQPGELSSGMPIAKRLKKASSDF 222
           RYMTNSCRSARNSQPTRPCCCNSYTIITEVSDQNFVDNQPGELSSGMPIAKRLKKASSDF
Sbjct: 181 RYMTNSCRSARNSQPTRPCCCNSYTIITEVSDQNFVDNQPGELSSGMPIAKRLKKASSDF 240

[Close]

BLAST of CsaV3_7G008550 vs. NCBI nr
Match: XP_008454953.1 (PREDICTED: uncharacterized protein LOC103495241 isoform X2 [Cucumis melo])

HSP 1 Score: 384.0 bits (985), Expect = 8.6e-103
Identity = 196/221 (88.69%), Postives = 201/221 (90.95%), Query Frame = 0


Query: 1   MGDSHTPSFLSPPLADRQSPMPLASATTDSTGFNSESHSSSITLDGSKHFFDSHHCSQLD 60
           MGDSHTPSF+S PLADRQSPMP AS+TTDSTGFNSESHSSSIT+DGSK F DSHHC QLD
Sbjct: 1   MGDSHTPSFVSSPLADRQSPMPPASSTTDSTGFNSESHSSSITVDGSKRFLDSHHCLQLD 60

Query: 61  AEQTHWTDEKHRLYLDSLEASFVQDLHQHRPMHALSPKQKMRRKPIRPDISSSEVRQHIH 120
           AEQTHWTDEKHR YLDSLEASFVQ LHQHR MHALS KQKMRRKPI  D SSSEVRQHIH
Sbjct: 61  AEQTHWTDEKHRSYLDSLEASFVQGLHQHRRMHALSSKQKMRRKPIMLDTSSSEVRQHIH 120

Query: 121 KKSGRKQCSLETPDLLEECESCSDRRHIRYMTNSCRSARNSQPTRPCCCNSYTIITEVSD 180
           KKSGRKQCSLETPDLLEEC SCSDRRHIR+MTNSC SARNSQ TRPCC NSYTIITEVSD
Sbjct: 121 KKSGRKQCSLETPDLLEECGSCSDRRHIRHMTNSCGSARNSQQTRPCCFNSYTIITEVSD 180

Query: 181 QNFVDNQPGELSSGMPIAKRLKKASSDFSDSAQVVPFKRLS 222
           QNFVDNQPGELS GMP AKRLKKASS F D+AQVVPFKRLS
Sbjct: 181 QNFVDNQPGELSGGMPTAKRLKKASSGFLDNAQVVPFKRLS 221

[Close]

BLAST of CsaV3_7G008550 vs. NCBI nr
Match: XP_008454952.1 (PREDICTED: uncharacterized protein LOC103495241 isoform X1 [Cucumis melo])

HSP 1 Score: 345.5 bits (885), Expect = 3.4e-91
Identity = 188/253 (74.31%), Postives = 196/253 (77.47%), Query Frame = 0


Query: 1   MGDSHTPSFLSPPLADRQSPMPLASATTDSTGFNSESHSSSITLDGSKHFFDSHHCSQLD 60
           MGDSHTPSF+S PLADRQSPMP AS+TTDSTGFNSESHSSSIT+DGSK F DSHHC QLD
Sbjct: 1   MGDSHTPSFVSSPLADRQSPMPPASSTTDSTGFNSESHSSSITVDGSKRFLDSHHCLQLD 60

Query: 61  AEQTHWTDEKHRLYLDSLEASFVQDLHQHRPMHALSPKQKMRRKPIRPDISSSEV----- 120
           AEQTHWTDEKHR YLDSLEASFVQ LHQHR MHALS KQKMRRKPI  D SSSE+     
Sbjct: 61  AEQTHWTDEKHRSYLDSLEASFVQGLHQHRRMHALSSKQKMRRKPIMLDTSSSELMVLQD 120

Query: 121 ----RQHI-----------------------HKKSGRKQCSLETPDLLEECESCSDRRHI 180
               + +I                       H  S  KQCSLETPDLLEEC SCSDRRHI
Sbjct: 121 ASWQKANIGRNDPLLDKTADSPAILEDLWINHFPSAGKQCSLETPDLLEECGSCSDRRHI 180

Query: 181 RYMTNSCRSARNSQPTRPCCCNSYTIITEVSDQNFVDNQPGELSSGMPIAKRLKKASSDF 222
           R+MTNSC SARNSQ TRPCC NSYTIITEVSDQNFVDNQPGELS GMP AKRLKKASS F
Sbjct: 181 RHMTNSCGSARNSQQTRPCCFNSYTIITEVSDQNFVDNQPGELSGGMPTAKRLKKASSGF 240

[Close]

BLAST of CsaV3_7G008550 vs. NCBI nr
Match: KAA0031301.1 (Cold regulated protein 27, putative isoform 2 [Cucumis melo var. makuwa] >TYK06753.1 Cold regulated protein 27, putative isoform 2 [Cucumis melo var. makuwa])

HSP 1 Score: 330.5 bits (846), Expect = 1.1e-86
Identity = 180/245 (73.47%), Postives = 188/245 (76.73%), Query Frame = 0


Query: 1   MGDSHTPSFLSPPLADRQSPMPLASATTDSTGFNSESHSSSITLDGSKHFFDSHHCSQLD 60
           MGDSHTPSF+S PLADRQSPMP AS+TTDSTGFNSESHSSSIT+DGSK F DSHHC QLD
Sbjct: 1   MGDSHTPSFVSSPLADRQSPMPPASSTTDSTGFNSESHSSSITVDGSKRFLDSHHCLQLD 60

Query: 61  AEQTHWTDEKHRLYLDSLEASFVQDLHQHRPMHALSPKQKMRRKPIRPDISSSEV----- 120
           AEQTHWTDEKHR YLDSLEASFVQ LHQHR MHALS KQKMRRKPI  D SSSE+     
Sbjct: 61  AEQTHWTDEKHRSYLDSLEASFVQGLHQHRRMHALSSKQKMRRKPIMLDTSSSELMVLQD 120

Query: 121 ----RQHI-----------------------HKKSGRKQCSLETPDLLEECESCSDRRHI 180
               + +I                       H  S  KQCSLETPDLLEEC SCSDRRHI
Sbjct: 121 ASWQKANIGRNDPLLDKTADSPAILEDLWINHFPSAGKQCSLETPDLLEECGSCSDRRHI 180

Query: 181 RYMTNSCRSARNSQPTRPCCCNSYTIITEVSDQNFVDNQPGELSSGMPIAKRLKKASSDF 214
           R+MTNSC SARNSQ TRPCC NSYTIITEVSDQNFVDNQPGELS GMP AKRLKKASS F
Sbjct: 181 RHMTNSCGSARNSQQTRPCCFNSYTIITEVSDQNFVDNQPGELSGGMPTAKRLKKASSGF 240

[Close]

BLAST of CsaV3_7G008550 vs. ExPASy TrEMBL
Match: A0A0A0K7Z2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G073620 PE=4 SV=1)

HSP 1 Score: 406.4 bits (1043), Expect = 7.8e-110
Identity = 213/253 (84.19%), Postives = 216/253 (85.38%), Query Frame = 0


Query: 1   MGDSHTPSFLSPPLADRQSPMPLASATTDSTGFNSESHSSSITLDGSKHFFDSHHCSQLD 60
           MGDSHTPSFLSPPLADRQSPMPLASATTDSTGFNSESHSSSITLDGSKHFFDSHHCSQLD
Sbjct: 1   MGDSHTPSFLSPPLADRQSPMPLASATTDSTGFNSESHSSSITLDGSKHFFDSHHCSQLD 60

Query: 61  AEQTHWTDEKHRLYLDSLEASFVQDLHQHRPMHALSPKQKMRRKPIRPDISSSEV----- 120
           AEQTHWTDEKHRLYLDSLEASFVQDLHQHRPMHALSPKQKMRRKPIRPDISSSE+     
Sbjct: 61  AEQTHWTDEKHRLYLDSLEASFVQDLHQHRPMHALSPKQKMRRKPIRPDISSSELMVLQD 120

Query: 121 ----RQHI-----------------------HKKSGRKQCSLETPDLLEECESCSDRRHI 180
               + +I                       H  S  KQCSLETPDLLEECESCSDRRHI
Sbjct: 121 ASWQKANIGRNDPLLDKTADSPAILEDLWINHFPSAGKQCSLETPDLLEECESCSDRRHI 180

Query: 181 RYMTNSCRSARNSQPTRPCCCNSYTIITEVSDQNFVDNQPGELSSGMPIAKRLKKASSDF 222
           RYMTNSCRSARNSQPTRPCCCNSYTIITEVSDQNFVDNQPGELSSGMPIAKRLKKASSDF
Sbjct: 181 RYMTNSCRSARNSQPTRPCCCNSYTIITEVSDQNFVDNQPGELSSGMPIAKRLKKASSDF 240

[Close]

BLAST of CsaV3_7G008550 vs. ExPASy TrEMBL
Match: A0A1S3BZQ8 (uncharacterized protein LOC103495241 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495241 PE=4 SV=1)

HSP 1 Score: 384.0 bits (985), Expect = 4.2e-103
Identity = 196/221 (88.69%), Postives = 201/221 (90.95%), Query Frame = 0


Query: 1   MGDSHTPSFLSPPLADRQSPMPLASATTDSTGFNSESHSSSITLDGSKHFFDSHHCSQLD 60
           MGDSHTPSF+S PLADRQSPMP AS+TTDSTGFNSESHSSSIT+DGSK F DSHHC QLD
Sbjct: 1   MGDSHTPSFVSSPLADRQSPMPPASSTTDSTGFNSESHSSSITVDGSKRFLDSHHCLQLD 60

Query: 61  AEQTHWTDEKHRLYLDSLEASFVQDLHQHRPMHALSPKQKMRRKPIRPDISSSEVRQHIH 120
           AEQTHWTDEKHR YLDSLEASFVQ LHQHR MHALS KQKMRRKPI  D SSSEVRQHIH
Sbjct: 61  AEQTHWTDEKHRSYLDSLEASFVQGLHQHRRMHALSSKQKMRRKPIMLDTSSSEVRQHIH 120

Query: 121 KKSGRKQCSLETPDLLEECESCSDRRHIRYMTNSCRSARNSQPTRPCCCNSYTIITEVSD 180
           KKSGRKQCSLETPDLLEEC SCSDRRHIR+MTNSC SARNSQ TRPCC NSYTIITEVSD
Sbjct: 121 KKSGRKQCSLETPDLLEECGSCSDRRHIRHMTNSCGSARNSQQTRPCCFNSYTIITEVSD 180

Query: 181 QNFVDNQPGELSSGMPIAKRLKKASSDFSDSAQVVPFKRLS 222
           QNFVDNQPGELS GMP AKRLKKASS F D+AQVVPFKRLS
Sbjct: 181 QNFVDNQPGELSGGMPTAKRLKKASSGFLDNAQVVPFKRLS 221

[Close]

BLAST of CsaV3_7G008550 vs. ExPASy TrEMBL
Match: A0A1S3BZU8 (uncharacterized protein LOC103495241 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495241 PE=4 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 1.6e-91
Identity = 188/253 (74.31%), Postives = 196/253 (77.47%), Query Frame = 0


Query: 1   MGDSHTPSFLSPPLADRQSPMPLASATTDSTGFNSESHSSSITLDGSKHFFDSHHCSQLD 60
           MGDSHTPSF+S PLADRQSPMP AS+TTDSTGFNSESHSSSIT+DGSK F DSHHC QLD
Sbjct: 1   MGDSHTPSFVSSPLADRQSPMPPASSTTDSTGFNSESHSSSITVDGSKRFLDSHHCLQLD 60

Query: 61  AEQTHWTDEKHRLYLDSLEASFVQDLHQHRPMHALSPKQKMRRKPIRPDISSSEV----- 120
           AEQTHWTDEKHR YLDSLEASFVQ LHQHR MHALS KQKMRRKPI  D SSSE+     
Sbjct: 61  AEQTHWTDEKHRSYLDSLEASFVQGLHQHRRMHALSSKQKMRRKPIMLDTSSSELMVLQD 120

Query: 121 ----RQHI-----------------------HKKSGRKQCSLETPDLLEECESCSDRRHI 180
               + +I                       H  S  KQCSLETPDLLEEC SCSDRRHI
Sbjct: 121 ASWQKANIGRNDPLLDKTADSPAILEDLWINHFPSAGKQCSLETPDLLEECGSCSDRRHI 180

Query: 181 RYMTNSCRSARNSQPTRPCCCNSYTIITEVSDQNFVDNQPGELSSGMPIAKRLKKASSDF 222
           R+MTNSC SARNSQ TRPCC NSYTIITEVSDQNFVDNQPGELS GMP AKRLKKASS F
Sbjct: 181 RHMTNSCGSARNSQQTRPCCFNSYTIITEVSDQNFVDNQPGELSGGMPTAKRLKKASSGF 240

[Close]

BLAST of CsaV3_7G008550 vs. ExPASy TrEMBL
Match: A0A5D3C4A3 (Cold regulated protein 27, putative isoform 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G00540 PE=4 SV=1)

HSP 1 Score: 330.5 bits (846), Expect = 5.5e-87
Identity = 180/245 (73.47%), Postives = 188/245 (76.73%), Query Frame = 0


Query: 1   MGDSHTPSFLSPPLADRQSPMPLASATTDSTGFNSESHSSSITLDGSKHFFDSHHCSQLD 60
           MGDSHTPSF+S PLADRQSPMP AS+TTDSTGFNSESHSSSIT+DGSK F DSHHC QLD
Sbjct: 1   MGDSHTPSFVSSPLADRQSPMPPASSTTDSTGFNSESHSSSITVDGSKRFLDSHHCLQLD 60

Query: 61  AEQTHWTDEKHRLYLDSLEASFVQDLHQHRPMHALSPKQKMRRKPIRPDISSSEV----- 120
           AEQTHWTDEKHR YLDSLEASFVQ LHQHR MHALS KQKMRRKPI  D SSSE+     
Sbjct: 61  AEQTHWTDEKHRSYLDSLEASFVQGLHQHRRMHALSSKQKMRRKPIMLDTSSSELMVLQD 120

Query: 121 ----RQHI-----------------------HKKSGRKQCSLETPDLLEECESCSDRRHI 180
               + +I                       H  S  KQCSLETPDLLEEC SCSDRRHI
Sbjct: 121 ASWQKANIGRNDPLLDKTADSPAILEDLWINHFPSAGKQCSLETPDLLEECGSCSDRRHI 180

Query: 181 RYMTNSCRSARNSQPTRPCCCNSYTIITEVSDQNFVDNQPGELSSGMPIAKRLKKASSDF 214
           R+MTNSC SARNSQ TRPCC NSYTIITEVSDQNFVDNQPGELS GMP AKRLKKASS F
Sbjct: 181 RHMTNSCGSARNSQQTRPCCFNSYTIITEVSDQNFVDNQPGELSGGMPTAKRLKKASSGF 240

[Close]

BLAST of CsaV3_7G008550 vs. ExPASy TrEMBL
Match: A0A6J1GJF7 (uncharacterized protein LOC111454842 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111454842 PE=4 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 2.1e-70
Identity = 147/217 (67.74%), Postives = 174/217 (80.18%), Query Frame = 0


Query: 1   MGDSHTPSFLSPPLADRQSPMPLASATTDSTGFNSESHSSSITLDGSK---HFFDSHHCS 60
           M D+HTPS +SPP+ADR+SPM +++  +D T  NSES+SSS T+D S+       SHHC 
Sbjct: 1   MVDAHTPSSMSPPVADRESPMSVSA--SDLTRLNSESYSSSNTVDASEGDLPLMPSHHCF 60

Query: 61  QLDAEQTHWTDEKHRLYLDSLEASFVQDLHQHRPMHALSPKQKMRRKPIRPDISSSEVRQ 120
           QLDA QTHWT+EKHRL+LDSLEASFVQDLH++R + ALS KQKMRRKPI P+ISSSEVRQ
Sbjct: 61  QLDAVQTHWTEEKHRLFLDSLEASFVQDLHRYRHLRALSSKQKMRRKPIMPNISSSEVRQ 120

Query: 121 HIHKKSGRKQCSLETPDLLEECESCSDRRHIRYMTNSCRSARNSQPTRPCCCNSYTIITE 180
           +IH KSGR QC+LET D+LEEC SCSDR HIR  TNS +SAR+SQ   PCC +S+TI+TE
Sbjct: 121 YIHSKSGRNQCTLETTDVLEECGSCSDRSHIRNKTNSRQSARSSQQIPPCCRDSHTIVTE 180

Query: 181 VSDQNFVDNQPGELSSGMPIAKRLKKASSDFSDSAQV 215
           VSDQNFVD  PGELS G PI KRLKKASSD S + +V
Sbjct: 181 VSDQNFVDTHPGELSDGTPITKRLKKASSDSSGNNRV 215

The following BLAST results are available for this feature:

BLAST of CsaV3_7G008550 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011658902.1	4.1e-121	100.00	cold-regulated protein 28 isoform X2 [Cucumis sativus] >KAE8645863.1 hypothetica...	[more]
XP_004136978.1	1.6e-109	84.19	cold-regulated protein 27 isoform X1 [Cucumis sativus]	[more]
XP_008454953.1	8.6e-103	88.69	PREDICTED: uncharacterized protein LOC103495241 isoform X2 [Cucumis melo]	[more]
XP_008454952.1	3.4e-91	74.31	PREDICTED: uncharacterized protein LOC103495241 isoform X1 [Cucumis melo]	[more]
KAA0031301.1	1.1e-86	73.47	Cold regulated protein 27, putative isoform 2 [Cucumis melo var. makuwa] >TYK067...	[more]

BLAST of CsaV3_7G008550 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G008550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7Z2	7.8e-110	84.19	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G073620 PE=4 SV=1	[more]
A0A1S3BZQ8	4.2e-103	88.69	uncharacterized protein LOC103495241 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3BZU8	1.6e-91	74.31	uncharacterized protein LOC103495241 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A5D3C4A3	5.5e-87	73.47	Cold regulated protein 27, putative isoform 2 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A6J1GJF7	2.1e-70	67.74	uncharacterized protein LOC111454842 isoform X3 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of CsaV3_7G008550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..40
None	No IPR available	PANTHER	PTHR33676:SF17	REGULATED GENE 27, PUTATIVE ISOFORM 2-RELATED	coord: 4..104
None	No IPR available	PANTHER	PTHR33676:SF17	REGULATED GENE 27, PUTATIVE ISOFORM 2-RELATED	coord: 119..220
IPR044678	Cold-regulated protein 27/28	PANTHER	PTHR33676	COLD REGULATED PROTEIN 27	coord: 4..104
IPR044678	Cold-regulated protein 27/28	PANTHER	PTHR33676	COLD REGULATED PROTEIN 27	coord: 119..220

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G008550.1	CsaV3_7G008550.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042752	regulation of circadian rhythm
biological_process	GO:0009409	response to cold