CsaV3_7G007410 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_7G007410
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	CYSTM domain-containing protein
Location	chr7: 4623134 .. 4624000 (+)
RNA-Seq Expression	CsaV3_7G007410
Synteny	CsaV3_7G007410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGATCCCAAATATGCCTATCCCTACCCACCTCCTCAAGGTATGTTGAGCTAGCTATGTTCAGGTTGGTAATTCCGTTGTTACGTTTTGTTTGATTTAGTAATTTGGGGTGGTGTGGATTTATTTGCAGGAGGATATTATCAAGGGCCACCAGTGATGGCGCCACCGCAGTACGCCGCCCCACCGCCAAGACGACAACCGGGTTTCTTGGAGGGATGGTATGCCAAAAAGCTTCTTCTTTTTGTTGATAATTAAACTCTCTCTTTAATTGTTCTGGTTTTGCTTGCATATATCAAAACTGAAGGTTTGAATTGAGAGTGTTAGGATGATCTAAAGAAAATTTATATCTGTACTACCGTGATAAAAGATAGAACTTGAACATGCTGCCTTTGATTTAGTTTCTTGACATCTTTCTTTCTCGGGTGCTAAACATATCGAAGTGACGAGATCGTCTATGAAGTTTGAACTACATCTTAGGTTTGGATTCTATGTTTTCTTTAGTGTGGCTTAACAGAGGGTTTCACTTTGTGTTTGCAGCCTTGCAGCTCTATGCTGCTGCTGTCTCCTTGATGAATGCTGCTGTGACCCTTCCATTATCTTTCTTACTTGATGCTATGAGAGAATTCATTGCCTTTGTAGCTGTAAATTGCCTCATCTCTTATCTCTTTTCTTTTCTTATTTTGTGAGTGTGGTTTTATTTTGTGTAAACTTGGAAAGAACATTGATTGGTGTGCAGAATAAAAGCTGCTTTGCTGTAAAGTATATTATATAGAGTTTGTATATGCTCATTCTCGTTACCTAGCTAATTTAGTTTTTATACTTTAGCACACGCACGTGTTTATCAACACTTTCTTTGGCTCGTGA

mRNA sequence

ATGAGTGATCCCAAATATGCCTATCCCTACCCACCTCCTCAAGGAGGATATTATCAAGGGCCACCAGTGATGGCGCCACCGCAGTACGCCGCCCCACCGCCAAGACGACAACCGGCCTTGCAGCTCTATGCTGCTGCTGTCTCCTTGATGAATGCTGCTGTGACCCTTCCATTATCTTTCTTACTTGATGCTATGAGAGAATTCATTGCCTTTGTAGCTCACACGCACGTGTTTATCAACACTTTCTTTGGCTCGTGA

Coding sequence (CDS)

ATGAGTGATCCCAAATATGCCTATCCCTACCCACCTCCTCAAGGAGGATATTATCAAGGGCCACCAGTGATGGCGCCACCGCAGTACGCCGCCCCACCGCCAAGACGACAACCGGCCTTGCAGCTCTATGCTGCTGCTGTCTCCTTGATGAATGCTGCTGTGACCCTTCCATTATCTTTCTTACTTGATGCTATGAGAGAATTCATTGCCTTTGTAGCTCACACGCACGTGTTTATCAACACTTTCTTTGGCTCGTGA

Protein sequence

MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPRRQPALQLYAAAVSLMNAAVTLPLSFLLDAMREFIAFVAHTHVFINTFFGS*

Homology

[Close]

BLAST of CsaV3_7G007410 vs. NCBI nr
Match: KGN43811.1 (hypothetical protein Csa_017361 [Cucumis sativus])

HSP 1 Score: 168.3 bits (425), Expect = 2.9e-38
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0


Query: 1  MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPRRQPALQLYAAAVSLMNAAVTLPLSF 60
          MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPRRQPALQLYAAAVSLMNAAVTLPLSF
Sbjct: 1  MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPRRQPALQLYAAAVSLMNAAVTLPLSF 60

Query: 61 LLDAMREFIAFVAHTHVFINTFFGS 86
          LLDAMREFIAFVAHTHVFINTFFGS
Sbjct: 61 LLDAMREFIAFVAHTHVFINTFFGS 85

[Close]

BLAST of CsaV3_7G007410 vs. NCBI nr
Match: KAA0031406.1 (cysteine-rich and transmembrane domain-containing protein A-like [Cucumis melo var. makuwa] >TYK06857.1 cysteine-rich and transmembrane domain-containing protein A-like [Cucumis melo var. makuwa])

HSP 1 Score: 121.3 bits (303), Expect = 4.0e-24
Identity = 71/99 (71.72%), Postives = 73/99 (73.74%), Query Frame = 0


Query: 1  MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPRRQP---------------------- 60
          MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPP+RQP                      
Sbjct: 1  MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPKRQPGFLEGWFGFPVRLVWLNRGFNF 60

Query: 61 ---ALQLYAAAVSLMNAAVTLPLSFLLDAMRE-FIAFVA 74
             ALQLYAAAVSLMNAAVTLPLSFLLDAMR+ FIAFVA
Sbjct: 61 VFAALQLYAAAVSLMNAAVTLPLSFLLDAMRDFFIAFVA 99

[Close]

BLAST of CsaV3_7G007410 vs. NCBI nr
Match: KAG9440061.1 (hypothetical protein H6P81_020226 [Aristolochia fimbriata])

HSP 1 Score: 89.4 bits (220), Expect = 1.7e-14
Identity = 51/64 (79.69%), Postives = 51/64 (79.69%), Query Frame = 0


Query: 1  MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPRRQPALQLYAAAVSLMNAAVTLPLSF 60
          MSDPKYAYPYP    GYYQGPPVMAPPQYAAPPPRRQPA  L A AVSLMNAAVT P S 
Sbjct: 1  MSDPKYAYPYPAQ--GYYQGPPVMAPPQYAAPPPRRQPASLLSAVAVSLMNAAVTPPSSL 60

Query: 61 LLDA 65
            DA
Sbjct: 61 SADA 62

[Close]

BLAST of CsaV3_7G007410 vs. NCBI nr
Match: KAG8497388.1 (hypothetical protein CXB51_008632 [Gossypium anomalum])

HSP 1 Score: 85.9 bits (211), Expect = 1.9e-13
Identity = 47/63 (74.60%), Postives = 48/63 (76.19%), Query Frame = 0


Query: 1  MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPRRQPALQLYAAAVSLMNAAVTLPLSF 60
          MSDPKYAYPYP    GYYQGPPVMAPPQYAAPPPRR+P LQLY A V LMN AV  P S 
Sbjct: 1  MSDPKYAYPYPAQ--GYYQGPPVMAPPQYAAPPPRREPVLQLYVAVVLLMNVAVIHPSSL 60

Query: 61 LLD 64
            D
Sbjct: 61 SAD 61

[Close]

BLAST of CsaV3_7G007410 vs. NCBI nr
Match: KAG6571885.1 (hypothetical protein SDJN03_28613, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011569.1 hypothetical protein SDJN02_26475 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 79.3 bits (194), Expect = 1.8e-11
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 0


Query: 1  MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPRRQP 39
          MSDPKYAYPYPPP GGYYQGPPVMAPPQYAAPPP+RQP
Sbjct: 1  MSDPKYAYPYPPPPGGYYQGPPVMAPPQYAAPPPKRQP 38

[Close]

BLAST of CsaV3_7G007410 vs. ExPASy TrEMBL
Match: A0A0A0K7L8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G069130 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.4e-38
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0


Query: 1  MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPRRQPALQLYAAAVSLMNAAVTLPLSF 60
          MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPRRQPALQLYAAAVSLMNAAVTLPLSF
Sbjct: 1  MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPRRQPALQLYAAAVSLMNAAVTLPLSF 60

Query: 61 LLDAMREFIAFVAHTHVFINTFFGS 86
          LLDAMREFIAFVAHTHVFINTFFGS
Sbjct: 61 LLDAMREFIAFVAHTHVFINTFFGS 85

[Close]

BLAST of CsaV3_7G007410 vs. ExPASy TrEMBL
Match: A0A5A7SN04 (Cysteine-rich and transmembrane domain-containing protein A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G001610 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.9e-24
Identity = 71/99 (71.72%), Postives = 73/99 (73.74%), Query Frame = 0


Query: 1  MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPRRQP---------------------- 60
          MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPP+RQP                      
Sbjct: 1  MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPKRQPGFLEGWFGFPVRLVWLNRGFNF 60

Query: 61 ---ALQLYAAAVSLMNAAVTLPLSFLLDAMRE-FIAFVA 74
             ALQLYAAAVSLMNAAVTLPLSFLLDAMR+ FIAFVA
Sbjct: 61 VFAALQLYAAAVSLMNAAVTLPLSFLLDAMRDFFIAFVA 99

[Close]

BLAST of CsaV3_7G007410 vs. ExPASy TrEMBL
Match: A0A6J5VLP7 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS49555 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 3.6e-10
Identity = 45/73 (61.64%), Postives = 49/73 (67.12%), Query Frame = 0


Query: 1  MSDPKYAYPYPPPQGGYYQGPPVMAPPQY--AAPPPRRQPALQLYAAAVSLMNAAVTLPL 60
          MSDPKY Y YPP   G YQGPPVMAPPQY  AAPPP+R+PALQ Y AAVS M+ A T P 
Sbjct: 1  MSDPKYGYAYPPQ--GPYQGPPVMAPPQYYAAAPPPKREPALQHYVAAVSWMSVAATPPF 60

Query: 61 SFLLDAMREFIAF 72
            L D    F  +
Sbjct: 61 YLLPDNTMTFSTY 71

[Close]

BLAST of CsaV3_7G007410 vs. ExPASy TrEMBL
Match: A0A314Y8T5 (CYSTM domain-containing protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_05607 PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 8.8e-09
Identity = 34/39 (87.18%), Postives = 35/39 (89.74%), Query Frame = 0


Query: 1  MSDPKYAYPYPPP-QGGYYQGPPVMAPPQYAAPPPRRQP 39
          MSDPKY YPYP   QGGYYQGPPVMAPPQYAAPPPRR+P
Sbjct: 1  MSDPKYGYPYPAQGQGGYYQGPPVMAPPQYAAPPPRREP 39

[Close]

BLAST of CsaV3_7G007410 vs. ExPASy TrEMBL
Match: A0A5D2ND21 (CYSTM domain-containing protein OS=Gossypium tomentosum OX=34277 GN=ES332_A11G236600v1 PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.1e-08
Identity = 33/38 (86.84%), Postives = 34/38 (89.47%), Query Frame = 0


Query: 1  MSDPKYAYPYPPPQGGYYQGPPVMAPPQYAAPPPRRQP 39
          MSDPKYAYPYP    GYYQGPPVMAPPQYAAPPPRR+P
Sbjct: 1  MSDPKYAYPYPTQVLGYYQGPPVMAPPQYAAPPPRREP 38

[Close]

BLAST of CsaV3_7G007410 vs. TAIR 10
Match: AT4G33660.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 45.4 bits (106), Expect = 2.6e-05
Identity = 27/40 (67.50%), Postives = 27/40 (67.50%), Query Frame = 0


Query: 1  MSDPKYAYPYPPPQGGYYQG--PPVMAPPQYAAPPPRRQP 39
          MSDPKYAYPYP P G Y QG  PPV  PPQY  PPP   P
Sbjct: 1  MSDPKYAYPYPAP-GNYPQGPPPPVGVPPQYYPPPPPPPP 39

The following BLAST results are available for this feature:

BLAST of CsaV3_7G007410 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN43811.1	2.9e-38	100.00	hypothetical protein Csa_017361 [Cucumis sativus]	[more]
KAA0031406.1	4.0e-24	71.72	cysteine-rich and transmembrane domain-containing protein A-like [Cucumis melo v...	[more]
KAG9440061.1	1.7e-14	79.69	hypothetical protein H6P81_020226 [Aristolochia fimbriata]	[more]
KAG8497388.1	1.9e-13	74.60	hypothetical protein CXB51_008632 [Gossypium anomalum]	[more]
KAG6571885.1	1.8e-11	94.74	hypothetical protein SDJN03_28613, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CsaV3_7G007410 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G007410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7L8	1.4e-38	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G069130 PE=4 SV=1	[more]
A0A5A7SN04	1.9e-24	71.72	Cysteine-rich and transmembrane domain-containing protein A-like OS=Cucumis melo...	[more]
A0A6J5VLP7	3.6e-10	61.64	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS49555 PE=4 S...	[more]
A0A314Y8T5	8.8e-09	87.18	CYSTM domain-containing protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN...	[more]
A0A5D2ND21	1.1e-08	86.84	CYSTM domain-containing protein OS=Gossypium tomentosum OX=34277 GN=ES332_A11G23...	[more]

BLAST of CsaV3_7G007410 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G33660.1	2.6e-05	67.50	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G007410.1	CsaV3_7G007410.1	mRNA