CsaV3_7G007340 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_7G007340
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	UPF0481 protein At3g47200-like
Location	chr7: 4583833 .. 4584490 (-)
RNA-Seq Expression	CsaV3_7G007340
Synteny	CsaV3_7G007340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTGTTTGATAAGCACAAAGAAAGATGTGCGTTTACTTGAGAAGGCAGGAATCATAGTCAACGATATCGATGGCAGCGATAAAGAAGTTTCAGAATTGTTTAACAATCTCAGTAAATTTGTGCGTAGGTCAAGTGATATTAGTGCGTATTTTGAGAAATATTTCAACTATATCAGCAAAGCTTTGTGTGAGAATAATCGTAATAGACAGTGGAAAAAGTTGAAAGGTCGTTCTTTGAAACATAACTATTTCAATACGCCATGGGCTGGTATCGCTATCTTTGTTGGAACCTTCATTATTATTCTCACTCTCCTTCAAACCATATTCTCTGTTATATCTACATTTCTTAGCTAACTGAGTTAATTTAAGTTGCGTATTTTCCAATAAATATGCAAATTTAATACAAGGCCATGCCATACACACACCTTTGTGGAAGAAAGATAAAAAAATACATCAGGTAACTTAGTTTATAAATTTAAACCAAAGATTGATCAAAATGACAAATTTGACGTTACAATTGCAACTTAATAAAATAATTAAAAAACTGATCTCCATTCGAGGAGGGTCAGATCGGAGTTTACCTCGAAACGTCAACGATGTGAACATTCGTACTTCAGCTGTGTATCATTTACGCGAAATGACAATTATCATATAA

mRNA sequence

ATGGATTGTTTGATAAGCACAAAGAAAGATGTGCGTTTACTTGAGAAGGCAGGAATCATAGTCAACGATATCGATGGCAGCGATAAAGAAGTTTCAGAATTGTTTAACAATCTCAGTAAATTTGTGCGTAGGTCAAGTGATATTAGTGCGTATTTTGAGAAATATTTCAACTATATCAGCAAAGCTTTGTGTGAGAATAATCGTAATAGACAGTGGAAAAAGTTGAAAGGTCGTTCTTTGAAACATAACTATTTCAATACGCCATGGGCTGATCGGAGTTTACCTCGAAACGTCAACGATGTGAACATTCGTACTTCAGCTGTGTATCATTTACGCGAAATGACAATTATCATATAA

Coding sequence (CDS)

ATGGATTGTTTGATAAGCACAAAGAAAGATGTGCGTTTACTTGAGAAGGCAGGAATCATAGTCAACGATATCGATGGCAGCGATAAAGAAGTTTCAGAATTGTTTAACAATCTCAGTAAATTTGTGCGTAGGTCAAGTGATATTAGTGCGTATTTTGAGAAATATTTCAACTATATCAGCAAAGCTTTGTGTGAGAATAATCGTAATAGACAGTGGAAAAAGTTGAAAGGTCGTTCTTTGAAACATAACTATTTCAATACGCCATGGGCTGATCGGAGTTTACCTCGAAACGTCAACGATGTGAACATTCGTACTTCAGCTGTGTATCATTTACGCGAAATGACAATTATCATATAA

Protein sequence

MDCLISTKKDVRLLEKAGIIVNDIDGSDKEVSELFNNLSKFVRRSSDISAYFEKYFNYISKALCENNRNRQWKKLKGRSLKHNYFNTPWADRSLPRNVNDVNIRTSAVYHLREMTIII*

Homology

[Close]

BLAST of CsaV3_7G007340 vs. NCBI nr
Match: KAE8645829.1 (hypothetical protein Csa_017093 [Cucumis sativus])

HSP 1 Score: 238.8 bits (608), Expect = 2.4e-59
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 1   MDCLISTKKDVRLLEKAGIIVNDIDGSDKEVSELFNNLSKFVRRSSDISAYFEKYFNYIS 60
           MDCLISTKKDVRLLEKAGIIVNDIDGSDKEVSELFNNLSKFVRRSSDISAYFEKYFNYIS
Sbjct: 1   MDCLISTKKDVRLLEKAGIIVNDIDGSDKEVSELFNNLSKFVRRSSDISAYFEKYFNYIS 60

Query: 61  KALCENNRNRQWKKLKGRSLKHNYFNTPWADRSLPRNVNDVNIRTSAVYHLREMTIII 119
           KALCENNRNRQWKKLKGRSLKHNYFNTPWADRSLPRNVNDVNIRTSAVYHLREMTIII
Sbjct: 61  KALCENNRNRQWKKLKGRSLKHNYFNTPWADRSLPRNVNDVNIRTSAVYHLREMTIII 118

[Close]

BLAST of CsaV3_7G007340 vs. NCBI nr
Match: XP_016899969.1 (PREDICTED: UPF0481 protein At3g47200-like [Cucumis melo] >KAA0064944.1 UPF0481 protein [Cucumis melo var. makuwa])

HSP 1 Score: 135.2 bits (339), Expect = 3.7e-28
Identity = 75/94 (79.79%), Postives = 80/94 (85.11%), Query Frame = 0


Query: 1   MDCLISTKKDVRLLEKAGIIVNDIDGSDKEVSELFNNLSKFVRRSSDISAYFEKYFNYIS 60
           MD LIS +KDV LLEKAGIIVNDI GSDKEVSELFNNLSKFV RS DISAYFEK FN IS
Sbjct: 444 MDYLISIEKDVSLLEKAGIIVNDIGGSDKEVSELFNNLSKFVNRSGDISAYFEK-FNGIS 503

Query: 61  KALCENNRNRQWKKLKGRSLKHNYFNTPWADRSL 95
           KALCE +R+R+W KLK  SLKHNYFNTPWA  S+
Sbjct: 504 KALCE-HRDRRWNKLKA-SLKHNYFNTPWAGISV 534

[Close]

BLAST of CsaV3_7G007340 vs. NCBI nr
Match: XP_011649818.1 (UPF0481 protein At3g47200 [Cucumis sativus])

HSP 1 Score: 123.2 bits (308), Expect = 1.5e-24
Identity = 69/94 (73.40%), Postives = 77/94 (81.91%), Query Frame = 0


Query: 1   MDCLISTKKDVRLLEKAGIIVNDIDGSDKEVSELFNNLSKFVRRSSDISAYFEKYFNYIS 60
           MD LIST+KDV LLEKAGIIVNDI GS KEVS+LFNNLSKFV RS + S YF+K F  IS
Sbjct: 401 MDYLISTEKDVSLLEKAGIIVNDIGGSHKEVSKLFNNLSKFVNRSDNNSEYFKK-FQGIS 460

Query: 61  KALCENNRNRQWKKLKGRSLKHNYFNTPWADRSL 95
           KALCE +R+R+W KLK  SLKHNYFNTPWA  S+
Sbjct: 461 KALCE-HRDRRWNKLKA-SLKHNYFNTPWASISV 491

[Close]

BLAST of CsaV3_7G007340 vs. NCBI nr
Match: XP_022961913.1 (UPF0481 protein At3g47200-like [Cucurbita moschata])

HSP 1 Score: 100.5 bits (249), Expect = 1.0e-17
Identity = 59/90 (65.56%), Postives = 65/90 (72.22%), Query Frame = 0


Query: 1   MDCLISTKKDVRLLEKAGIIVNDIDGSDKEVSELFNNLSKFVRRSSDISAYFEKYFNYIS 60
           MD LIST+KDV LL KAGII+N+I GSDKEVS+LFNNL KFV  SSD S       N IS
Sbjct: 318 MDDLISTEKDVNLLVKAGIIINNIGGSDKEVSKLFNNLCKFVETSSDYS------LNNIS 377

Query: 61  KALCENNRNRQWKKLKGRSLKHNYFNTPWA 91
             L E + NR+W K K  SLKHNYFNTPWA
Sbjct: 378 NTLRE-HCNRRWNKAKA-SLKHNYFNTPWA 399

[Close]

BLAST of CsaV3_7G007340 vs. NCBI nr
Match: XP_023547064.1 (UPF0481 protein At3g47200-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 99.8 bits (247), Expect = 1.7e-17
Identity = 59/90 (65.56%), Postives = 65/90 (72.22%), Query Frame = 0


Query: 1   MDCLISTKKDVRLLEKAGIIVNDIDGSDKEVSELFNNLSKFVRRSSDISAYFEKYFNYIS 60
           MD LIST+KDV LL KAGII+N+I GSDKEVS+LFNNL KFV  SSD S       N IS
Sbjct: 362 MDDLISTEKDVNLLVKAGIIINNIGGSDKEVSKLFNNLCKFVETSSDDS------LNNIS 421

Query: 61  KALCENNRNRQWKKLKGRSLKHNYFNTPWA 91
             L E + NR+W K K  SLKHNYFNTPWA
Sbjct: 422 NTLRE-HCNRRWNKAKA-SLKHNYFNTPWA 443

[Close]

BLAST of CsaV3_7G007340 vs. ExPASy Swiss-Prot
Match: Q9SD53 (UPF0481 protein At3g47200 OS=Arabidopsis thaliana OX=3702 GN=At3g47200 PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 2.3e-04
Identity = 28/89 (31.46%), Postives = 44/89 (49.44%), Query Frame = 0


Query: 1   MDCLISTKKDVRLLEKAGIIVNDIDGSDKEVSELFNNLSKFVRRSSDISAYFEKYFNYIS 60
           M CL++ ++DV  L    +I+ +  GS+ EVSE F  +SK V    D S     Y N + 
Sbjct: 351 MGCLLNNEEDVTFLRNDKLIIENHFGSNNEVSEFFKTISKDVVFEVDTS-----YLNNVF 410

Query: 61  KALCENNRNRQWKKLKGRSLKHNYFNTPW 90
           K +  N   ++W        +H +F +PW
Sbjct: 411 KGV--NEYTKKWYNGLWAGFRHTHFESPW 432

[Close]

BLAST of CsaV3_7G007340 vs. ExPASy TrEMBL
Match: A0A0A0K2S5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G068560 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 2.0e-43
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1   MDCLISTKKDVRLLEKAGIIVNDIDGSDKEVSELFNNLSKFVRRSSDISAYFEKYFNYIS 60
           MDCLISTKKDVRLLEKAGIIVNDIDGSDKEVSELFNNLSKFVRRSSDISAYFEKYFNYIS
Sbjct: 108 MDCLISTKKDVRLLEKAGIIVNDIDGSDKEVSELFNNLSKFVRRSSDISAYFEKYFNYIS 167

Query: 61  KALCENNRNRQWKKLKGRSLKHNYFNTPWA 91
           KALCENNRNRQWKKLKGRSLKHNYFNTPWA
Sbjct: 168 KALCENNRNRQWKKLKGRSLKHNYFNTPWA 197

[Close]

BLAST of CsaV3_7G007340 vs. ExPASy TrEMBL
Match: A0A5A7VCD8 (UPF0481 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G002630 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.8e-28
Identity = 75/94 (79.79%), Postives = 80/94 (85.11%), Query Frame = 0


Query: 1   MDCLISTKKDVRLLEKAGIIVNDIDGSDKEVSELFNNLSKFVRRSSDISAYFEKYFNYIS 60
           MD LIS +KDV LLEKAGIIVNDI GSDKEVSELFNNLSKFV RS DISAYFEK FN IS
Sbjct: 444 MDYLISIEKDVSLLEKAGIIVNDIGGSDKEVSELFNNLSKFVNRSGDISAYFEK-FNGIS 503

Query: 61  KALCENNRNRQWKKLKGRSLKHNYFNTPWADRSL 95
           KALCE +R+R+W KLK  SLKHNYFNTPWA  S+
Sbjct: 504 KALCE-HRDRRWNKLKA-SLKHNYFNTPWAGISV 534

[Close]

BLAST of CsaV3_7G007340 vs. ExPASy TrEMBL
Match: A0A1S4DVF8 (UPF0481 protein At3g47200-like OS=Cucumis melo OX=3656 GN=LOC103488291 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.8e-28
Identity = 75/94 (79.79%), Postives = 80/94 (85.11%), Query Frame = 0


Query: 1   MDCLISTKKDVRLLEKAGIIVNDIDGSDKEVSELFNNLSKFVRRSSDISAYFEKYFNYIS 60
           MD LIS +KDV LLEKAGIIVNDI GSDKEVSELFNNLSKFV RS DISAYFEK FN IS
Sbjct: 444 MDYLISIEKDVSLLEKAGIIVNDIGGSDKEVSELFNNLSKFVNRSGDISAYFEK-FNGIS 503

Query: 61  KALCENNRNRQWKKLKGRSLKHNYFNTPWADRSL 95
           KALCE +R+R+W KLK  SLKHNYFNTPWA  S+
Sbjct: 504 KALCE-HRDRRWNKLKA-SLKHNYFNTPWAGISV 534

[Close]

BLAST of CsaV3_7G007340 vs. ExPASy TrEMBL
Match: A0A0A0LQ64 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G381630 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 7.1e-25
Identity = 69/94 (73.40%), Postives = 77/94 (81.91%), Query Frame = 0


Query: 1   MDCLISTKKDVRLLEKAGIIVNDIDGSDKEVSELFNNLSKFVRRSSDISAYFEKYFNYIS 60
           MD LIST+KDV LLEKAGIIVNDI GS KEVS+LFNNLSKFV RS + S YF+K F  IS
Sbjct: 401 MDYLISTEKDVSLLEKAGIIVNDIGGSHKEVSKLFNNLSKFVNRSDNNSEYFKK-FQGIS 460

Query: 61  KALCENNRNRQWKKLKGRSLKHNYFNTPWADRSL 95
           KALCE +R+R+W KLK  SLKHNYFNTPWA  S+
Sbjct: 461 KALCE-HRDRRWNKLKA-SLKHNYFNTPWASISV 491

[Close]

BLAST of CsaV3_7G007340 vs. ExPASy TrEMBL
Match: A0A6J1HD72 (UPF0481 protein At3g47200-like OS=Cucurbita moschata OX=3662 GN=LOC111462539 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 4.9e-18
Identity = 59/90 (65.56%), Postives = 65/90 (72.22%), Query Frame = 0


Query: 1   MDCLISTKKDVRLLEKAGIIVNDIDGSDKEVSELFNNLSKFVRRSSDISAYFEKYFNYIS 60
           MD LIST+KDV LL KAGII+N+I GSDKEVS+LFNNL KFV  SSD S       N IS
Sbjct: 318 MDDLISTEKDVNLLVKAGIIINNIGGSDKEVSKLFNNLCKFVETSSDYS------LNNIS 377

Query: 61  KALCENNRNRQWKKLKGRSLKHNYFNTPWA 91
             L E + NR+W K K  SLKHNYFNTPWA
Sbjct: 378 NTLRE-HCNRRWNKAKA-SLKHNYFNTPWA 399

[Close]

BLAST of CsaV3_7G007340 vs. TAIR 10
Match: AT3G50160.1 (Plant protein of unknown function (DUF247) )

HSP 1 Score: 55.5 bits (132), Expect = 3.5e-08
Identity = 40/92 (43.48%), Postives = 50/92 (54.35%), Query Frame = 0


Query: 1   MDCLISTKKDVRLLEKAGIIVNDIDGSDKEVSELFNNLSKFVRRSSDISAYFEKYFNYIS 60
           MD LI++ +DV  L   GII N + GSD EVS+LFN L K V         F+    Y+S
Sbjct: 390 MDNLINSSEDVSYLHHYGIIENWL-GSDSEVSDLFNGLGKEV--------IFDPNDGYLS 449

Query: 61  KALCENN--RNRQWKKLKGRSLKHNYFNTPWA 91
               E N    R+W  LK  +L+H YFN PWA
Sbjct: 450 ALTGEVNIYYRRKWNYLKA-TLRHKYFNNPWA 471

[Close]

BLAST of CsaV3_7G007340 vs. TAIR 10
Match: AT3G50130.1 (Plant protein of unknown function (DUF247) )

HSP 1 Score: 53.9 bits (128), Expect = 1.0e-07
Identity = 38/92 (41.30%), Postives = 53/92 (57.61%), Query Frame = 0


Query: 1   MDCLISTKKDVRLLEKAGIIVNDIDGSDKEVSELFNNLSKFVRRSSDISAYFEKYFNYIS 60
           MD LI + +DVR L   GII + + G+D EV++LFN L + V         F+   +Y+S
Sbjct: 453 MDNLIDSSEDVRYLHYCGIIEHWL-GNDYEVADLFNRLCQEVA--------FDPQNSYLS 512

Query: 61  KALCENNRN--RQWKKLKGRSLKHNYFNTPWA 91
           +   + +RN  R+W  LK   LKH YFN PWA
Sbjct: 513 QLSNKVDRNYSRKWNVLKA-ILKHKYFNNPWA 534

[Close]

BLAST of CsaV3_7G007340 vs. TAIR 10
Match: AT3G50120.1 (Plant protein of unknown function (DUF247) )

HSP 1 Score: 51.2 bits (121), Expect = 6.6e-07
Identity = 36/92 (39.13%), Postives = 51/92 (55.43%), Query Frame = 0


Query: 1   MDCLISTKKDVRLLEKAGIIVNDIDGSDKEVSELFNNLSKFVRRSSDISAYFEKYFNYIS 60
           MD LI + +DV  L   GII + + GSD EV++LFN L + V         F+   +Y+S
Sbjct: 420 MDNLIDSHEDVSYLHYCGIIEHWL-GSDSEVADLFNRLCQEV--------VFDTEDSYLS 479

Query: 61  KALCENNR--NRQWKKLKGRSLKHNYFNTPWA 91
           +   E NR  + +W   +  +LKH YFN PWA
Sbjct: 480 RLSIEVNRYYDHKWNAWRA-TLKHKYFNNPWA 501

[Close]

BLAST of CsaV3_7G007340 vs. TAIR 10
Match: AT3G47200.1 (Plant protein of unknown function (DUF247) )

HSP 1 Score: 46.6 bits (109), Expect = 1.6e-05
Identity = 28/89 (31.46%), Postives = 44/89 (49.44%), Query Frame = 0


Query: 1   MDCLISTKKDVRLLEKAGIIVNDIDGSDKEVSELFNNLSKFVRRSSDISAYFEKYFNYIS 60
           M CL++ ++DV  L    +I+ +  GS+ EVSE F  +SK V    D S     Y N + 
Sbjct: 351 MGCLLNNEEDVTFLRNDKLIIENHFGSNNEVSEFFKTISKDVVFEVDTS-----YLNNVF 410

Query: 61  KALCENNRNRQWKKLKGRSLKHNYFNTPW 90
           K +  N   ++W        +H +F +PW
Sbjct: 411 KGV--NEYTKKWYNGLWAGFRHTHFESPW 432

[Close]

BLAST of CsaV3_7G007340 vs. TAIR 10
Match: AT3G47200.2 (Plant protein of unknown function (DUF247) )

HSP 1 Score: 46.6 bits (109), Expect = 1.6e-05
Identity = 28/89 (31.46%), Postives = 44/89 (49.44%), Query Frame = 0


Query: 1   MDCLISTKKDVRLLEKAGIIVNDIDGSDKEVSELFNNLSKFVRRSSDISAYFEKYFNYIS 60
           M CL++ ++DV  L    +I+ +  GS+ EVSE F  +SK V    D S     Y N + 
Sbjct: 351 MGCLLNNEEDVTFLRNDKLIIENHFGSNNEVSEFFKTISKDVVFEVDTS-----YLNNVF 410

Query: 61  KALCENNRNRQWKKLKGRSLKHNYFNTPW 90
           K +  N   ++W        +H +F +PW
Sbjct: 411 KGV--NEYTKKWYNGLWAGFRHTHFESPW 432

The following BLAST results are available for this feature:

BLAST of CsaV3_7G007340 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8645829.1	2.4e-59	100.00	hypothetical protein Csa_017093 [Cucumis sativus]	[more]
XP_016899969.1	3.7e-28	79.79	PREDICTED: UPF0481 protein At3g47200-like [Cucumis melo] >KAA0064944.1 UPF0481 p...	[more]
XP_011649818.1	1.5e-24	73.40	UPF0481 protein At3g47200 [Cucumis sativus]	[more]
XP_022961913.1	1.0e-17	65.56	UPF0481 protein At3g47200-like [Cucurbita moschata]	[more]
XP_023547064.1	1.7e-17	65.56	UPF0481 protein At3g47200-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsaV3_7G007340 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SD53	2.3e-04	31.46	UPF0481 protein At3g47200 OS=Arabidopsis thaliana OX=3702 GN=At3g47200 PE=2 SV=1	[more]

BLAST of CsaV3_7G007340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K2S5	2.0e-43	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G068560 PE=4 SV=1	[more]
A0A5A7VCD8	1.8e-28	79.79	UPF0481 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G00263...	[more]
A0A1S4DVF8	1.8e-28	79.79	UPF0481 protein At3g47200-like OS=Cucumis melo OX=3656 GN=LOC103488291 PE=4 SV=1	[more]
A0A0A0LQ64	7.1e-25	73.40	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G381630 PE=4 SV=1	[more]
A0A6J1HD72	4.9e-18	65.56	UPF0481 protein At3g47200-like OS=Cucurbita moschata OX=3662 GN=LOC111462539 PE=...	[more]

BLAST of CsaV3_7G007340 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G50160.1	3.5e-08	43.48	Plant protein of unknown function (DUF247)	[more]
AT3G50130.1	1.0e-07	41.30	Plant protein of unknown function (DUF247)	[more]
AT3G50120.1	6.6e-07	39.13	Plant protein of unknown function (DUF247)	[more]
AT3G47200.1	1.6e-05	31.46	Plant protein of unknown function (DUF247)	[more]
AT3G47200.2	1.6e-05	31.46	Plant protein of unknown function (DUF247)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004158	Protein of unknown function DUF247, plant	PFAM	PF03140	DUF247	coord: 1..90 e-value: 2.7E-16 score: 59.8
IPR004158	Protein of unknown function DUF247, plant	PANTHER	PTHR31549	PROTEIN, PUTATIVE (DUF247)-RELATED-RELATED	coord: 1..92
None	No IPR available	PANTHER	PTHR31549:SF204	SUBFAMILY NOT NAMED	coord: 1..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G007340.1	CsaV3_7G007340.1	mRNA