CsaV3_7G007160 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_7G007160
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Phloem filament protein
Location	chr7: 4487517 .. 4488740 (+)
RNA-Seq Expression	CsaV3_7G007160
Synteny	CsaV3_7G007160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCAAATGGTATGTCAAAATCCACAATATAATATTATAGAAGATGCCTTACAAATTGTGAAAAGCTAATCAATATTCACTTTATTCTTTATATGAAATAATAATATAAGTAACAAATTTCTTTTACAAAAGCTATATATTGAAAGTATTTTGGCTTTTTTTCAGTTTAAACAATAACTAATGATTATCTTAAAATATTAGATCATACGATCATACGATCATATGTTGTAAATTTAAAATTTAACAAGAGATAGAAATCTGTCGATATCTATCCGTGTTTTTCATTGATAAAATCTACGAAGTAAAATCAAGAAAAGAAAATTTTCACAAGGCCTATAGCGTAACAAAGAGTATCAATAACCATAGGAAGGAGGAGAGGAAAATGTTTTAAAATTGAAAAGAACATAAAACTCAATTGGATATTAAACATTCGATCAACAAAAACTATAAATTAAACACCAAAAGAAAAAAAAAAGAAAAACAAATCAAAATCAATGACTCTCTTATCTATATATTTTTTATGATCAAATAACTTTCAAAACCTTCTCAAAAGGTTCTATATATTTTTCTTGGTATTTTGGCTAAGATCAAGTGTTCTATTATTATTATTATATATATATATATGCTTCATTTTTCAATGGGTTATCTTAAGTAAGGCCTCCCAGCATATTCTTTCCAAAATTATTCTTTGACTTGCACTATTTCTCCCATGAATACACTTGTATATAAAGCTTCAACAACTCATGCAATGGCAACCCACCAAACAAAATTTTCAATACTATCAAATATCAACTAAATTAGCTCACATAAAAATGACGATTGGTATTGGTGGAGGAATTGGTATTGGCATTGGCGTTCCTGGTATCAAAGTATCGATCGGTGGAGGCATCGGTATCGGAAGTAGAAAGGGGGGGTGCAAGAGTCATGATCCTTCAAAAAAATGGAGTCAAGTTCCCAATGCGCAAGCAGATCAAGTTATTATAAATGTTGCTAACTTTGCAGTGGCAGCGTTCAACCAAAAATATGGAAATAAGCTTGTGTTTCATGCAGTTTTGGAAGCTTGGGTTGTTGTTCTTCCTGATGGCAAAAAAGAGTATAGTATTGAATTAGTAGCAAAAGACTGTTTGAATCGTTGCCTCTACTTTCATGCTATTGTGATTGAAATAGTTGGCGTTCCCCCTGGCTGGAATCTTTTTTCTTTCACCCAAATCAGCGACTAA

mRNA sequence

ATGGCGGCAAATGCTCACATAAAAATGACGATTGGTATTGGTGGAGGAATTGGTATTGGCATTGGCGTTCCTGGTATCAAAGTATCGATCGGTGGAGGCATCGGTATCGGAAGTAGAAAGGGGGGGTGCAAGAGTCATGATCCTTCAAAAAAATGGAGTCAAGTTCCCAATGCGCAAGCAGATCAAGTTATTATAAATGTTGCTAACTTTGCAGTGGCAGCGTTCAACCAAAAATATGGAAATAAGCTTGTGTTTCATGCAGTTTTGGAAGCTTGGGTTGTTGTTCTTCCTGATGGCAAAAAAGAGTATAGTATTGAATTAGTAGCAAAAGACTGTTTGAATCGTTGCCTCTACTTTCATGCTATTGTGATTGAAATAGTTGGCGTTCCCCCTGGCTGGAATCTTTTTTCTTTCACCCAAATCAGCGACTAA

Coding sequence (CDS)

ATGGCGGCAAATGCTCACATAAAAATGACGATTGGTATTGGTGGAGGAATTGGTATTGGCATTGGCGTTCCTGGTATCAAAGTATCGATCGGTGGAGGCATCGGTATCGGAAGTAGAAAGGGGGGGTGCAAGAGTCATGATCCTTCAAAAAAATGGAGTCAAGTTCCCAATGCGCAAGCAGATCAAGTTATTATAAATGTTGCTAACTTTGCAGTGGCAGCGTTCAACCAAAAATATGGAAATAAGCTTGTGTTTCATGCAGTTTTGGAAGCTTGGGTTGTTGTTCTTCCTGATGGCAAAAAAGAGTATAGTATTGAATTAGTAGCAAAAGACTGTTTGAATCGTTGCCTCTACTTTCATGCTATTGTGATTGAAATAGTTGGCGTTCCCCCTGGCTGGAATCTTTTTTCTTTCACCCAAATCAGCGACTAA

Protein sequence

MAANAHIKMTIGIGGGIGIGIGVPGIKVSIGGGIGIGSRKGGCKSHDPSKKWSQVPNAQADQVIINVANFAVAAFNQKYGNKLVFHAVLEAWVVVLPDGKKEYSIELVAKDCLNRCLYFHAIVIEIVGVPPGWNLFSFTQISD*

Homology

[Close]

BLAST of CsaV3_7G007160 vs. NCBI nr
Match: KAE8645826.1 (hypothetical protein Csa_017081 [Cucumis sativus])

HSP 1 Score: 290.0 bits (741), Expect = 1.1e-74
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MAANAHIKMTIGIGGGIGIGIGVPGIKVSIGGGIGIGSRKGGCKSHDPSKKWSQVPNAQA 60
           MAANAHIKMTIGIGGGIGIGIGVPGIKVSIGGGIGIGSRKGGCKSHDPSKKWSQVPNAQA
Sbjct: 1   MAANAHIKMTIGIGGGIGIGIGVPGIKVSIGGGIGIGSRKGGCKSHDPSKKWSQVPNAQA 60

Query: 61  DQVIINVANFAVAAFNQKYGNKLVFHAVLEAWVVVLPDGKKEYSIELVAKDCLNRCLYFH 120
           DQVIINVANFAVAAFNQKYGNKLVFHAVLEAWVVVLPDGKKEYSIELVAKDCLNRCLYFH
Sbjct: 61  DQVIINVANFAVAAFNQKYGNKLVFHAVLEAWVVVLPDGKKEYSIELVAKDCLNRCLYFH 120

Query: 121 AIVIEIVGVPPGWNLFSFTQISD 144
           AIVIEIVGVPPGWNLFSFTQISD
Sbjct: 121 AIVIEIVGVPPGWNLFSFTQISD 143

[Close]

BLAST of CsaV3_7G007160 vs. NCBI nr
Match: XP_011658840.2 (uncharacterized protein LOC105436098 [Cucumis sativus])

HSP 1 Score: 273.9 bits (699), Expect = 8.1e-70
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 9   MTIGIGGGIGIGIGVPGIKVSIGGGIGIGSRKGGCKSHDPSKKWSQVPNAQADQVIINVA 68
           MTIGIGGGIGIGIGVPGIKVSIGGGIGIGSRKGGCKSHDPSKKWSQVPNAQADQVIINVA
Sbjct: 1   MTIGIGGGIGIGIGVPGIKVSIGGGIGIGSRKGGCKSHDPSKKWSQVPNAQADQVIINVA 60

Query: 69  NFAVAAFNQKYGNKLVFHAVLEAWVVVLPDGKKEYSIELVAKDCLNRCLYFHAIVIEIVG 128
           NFAVAAFNQKYGNKLVFHAVLEAWVVVLPDGKKEYSIELVAKDCLNRCLYFHAIVIEIVG
Sbjct: 61  NFAVAAFNQKYGNKLVFHAVLEAWVVVLPDGKKEYSIELVAKDCLNRCLYFHAIVIEIVG 120

Query: 129 VPPGWNLFSFTQISD 144
           VPPGWNLFSFTQISD
Sbjct: 121 VPPGWNLFSFTQISD 135

[Close]

BLAST of CsaV3_7G007160 vs. NCBI nr
Match: TYK06875.1 (phloem filament protein [Cucumis melo var. makuwa])

HSP 1 Score: 201.1 bits (510), Expect = 6.7e-48
Identity = 97/133 (72.93%), Postives = 110/133 (82.71%), Query Frame = 0


Query: 9   MTIGIGGGIGIGIGVPGIKVSIGGGIGIGSRKGGCKSHDPSKKWSQVPNAQADQVIINVA 68
           MT+GIGGGIGIG+G+PGI +SIGGGIGI  RKGGCKSHDPSKKW+++ +   D  II +A
Sbjct: 1   MTLGIGGGIGIGLGIPGINISIGGGIGIRGRKGGCKSHDPSKKWTEIKSVN-DPAIIEIA 60

Query: 69  NFAVAAFNQKYGNKLVFHAVLEAWVVVLPDGKKEYSIELVAKDCLNRCLYFHAIVIEIVG 128
            FAV  FNQK+GN L F AVLEAWVVV  DGKKEYSIELVAKDCL+RCL +HA+VIEI G
Sbjct: 61  KFAVKVFNQKHGNNLQFQAVLEAWVVVHVDGKKEYSIELVAKDCLHRCLQYHAVVIEICG 120

Query: 129 VPPGWNLFSFTQI 142
            PPGWNL SF QI
Sbjct: 121 TPPGWNLVSFNQI 132

[Close]

BLAST of CsaV3_7G007160 vs. NCBI nr
Match: ADN34263.1 (phloem filament protein [Cucumis melo subsp. melo] >KAA0031424.1 phloem filament protein [Cucumis melo var. makuwa])

HSP 1 Score: 198.7 bits (504), Expect = 3.3e-47
Identity = 96/133 (72.18%), Postives = 109/133 (81.95%), Query Frame = 0


Query: 9   MTIGIGGGIGIGIGVPGIKVSIGGGIGIGSRKGGCKSHDPSKKWSQVPNAQADQVIINVA 68
           MT+GIGGGI IG+G+PGI +SIGGGIGI  RKGGCKSHDPSKKW+++ +   D  II +A
Sbjct: 1   MTLGIGGGISIGLGIPGINISIGGGIGIRGRKGGCKSHDPSKKWTEIKSVN-DPAIIEIA 60

Query: 69  NFAVAAFNQKYGNKLVFHAVLEAWVVVLPDGKKEYSIELVAKDCLNRCLYFHAIVIEIVG 128
            FAV  FNQK+GN L F AVLEAWVVV  DGKKEYSIELVAKDCL+RCL +HA+VIEI G
Sbjct: 61  KFAVKVFNQKHGNNLQFQAVLEAWVVVHVDGKKEYSIELVAKDCLHRCLQYHAVVIEICG 120

Query: 129 VPPGWNLFSFTQI 142
            PPGWNL SF QI
Sbjct: 121 TPPGWNLVSFNQI 132

[Close]

BLAST of CsaV3_7G007160 vs. NCBI nr
Match: ADN34264.1 (phloem filament protein [Cucumis melo subsp. melo] >KAA0031425.1 phloem filament protein [Cucumis melo var. makuwa])

HSP 1 Score: 149.1 bits (375), Expect = 3.0e-32
Identity = 83/136 (61.03%), Postives = 97/136 (71.32%), Query Frame = 0


Query: 9   MTIGIGGGIGIGIGVPGIKVSIGGGIGIGSRKGGCKSHDPSKKWSQVPNAQADQVIINVA 68
           MT+GIGG IGIG G+PG  +SIGGGIGIG RKGGCKSH+PSKKW Q+ N +A  V +  A
Sbjct: 1   MTLGIGGRIGIGFGLPGFNISIGGGIGIGGRKGGCKSHNPSKKWIQLHNVKAPDV-LEAA 60

Query: 69  NFAVAAFNQKYGNKLVFHAVLEAWVVVLPDGKKEYSIELVAKDCLNRCLYFHAIVIE-IV 128
            FAV AFN+KY N L F  V EAWV  + + +KEYSIELVAKDC +R L FHA+VIE  V
Sbjct: 61  KFAVDAFNKKYENNLEFQYVTEAWVHEV-NNEKEYSIELVAKDCFHRLLEFHAVVIEKTV 120

Query: 129 GVPPGWNLFSFTQISD 144
                W L SF +I D
Sbjct: 121 DHKKIWILVSFERIFD 134

[Close]

BLAST of CsaV3_7G007160 vs. ExPASy TrEMBL
Match: A0A0A0K477 (PP1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G067390 PE=4 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 8.5e-73
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 5   AHIKMTIGIGGGIGIGIGVPGIKVSIGGGIGIGSRKGGCKSHDPSKKWSQVPNAQADQVI 64
           AHIKMTIGIGGGIGIGIGVPGIKVSIGGGIGIGSRKGGCKSHDPSKKWSQVPNAQADQVI
Sbjct: 20  AHIKMTIGIGGGIGIGIGVPGIKVSIGGGIGIGSRKGGCKSHDPSKKWSQVPNAQADQVI 79

Query: 65  INVANFAVAAFNQKYGNKLVFHAVLEAWVVVLPDGKKEYSIELVAKDCLNRCLYFHAIVI 124
           INVANFAVAAFNQKYGNKLVFHAVLEAWVVVLPDGKKEYSIELVAKDCLNRCLYFHAIVI
Sbjct: 80  INVANFAVAAFNQKYGNKLVFHAVLEAWVVVLPDGKKEYSIELVAKDCLNRCLYFHAIVI 139

Query: 125 EIVGVPPGWNLFSFTQISD 144
           EIVGVPPGWNLFSFTQISD
Sbjct: 140 EIVGVPPGWNLFSFTQISD 158

[Close]

BLAST of CsaV3_7G007160 vs. ExPASy TrEMBL
Match: A0A5D3C621 (Phloem filament protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G001790 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 3.2e-48
Identity = 97/133 (72.93%), Postives = 110/133 (82.71%), Query Frame = 0


Query: 9   MTIGIGGGIGIGIGVPGIKVSIGGGIGIGSRKGGCKSHDPSKKWSQVPNAQADQVIINVA 68
           MT+GIGGGIGIG+G+PGI +SIGGGIGI  RKGGCKSHDPSKKW+++ +   D  II +A
Sbjct: 1   MTLGIGGGIGIGLGIPGINISIGGGIGIRGRKGGCKSHDPSKKWTEIKSVN-DPAIIEIA 60

Query: 69  NFAVAAFNQKYGNKLVFHAVLEAWVVVLPDGKKEYSIELVAKDCLNRCLYFHAIVIEIVG 128
            FAV  FNQK+GN L F AVLEAWVVV  DGKKEYSIELVAKDCL+RCL +HA+VIEI G
Sbjct: 61  KFAVKVFNQKHGNNLQFQAVLEAWVVVHVDGKKEYSIELVAKDCLHRCLQYHAVVIEICG 120

Query: 129 VPPGWNLFSFTQI 142
            PPGWNL SF QI
Sbjct: 121 TPPGWNLVSFNQI 132

[Close]

BLAST of CsaV3_7G007160 vs. ExPASy TrEMBL
Match: A0A5A7SJV3 (Phloem filament protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G001800 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.6e-47
Identity = 96/133 (72.18%), Postives = 109/133 (81.95%), Query Frame = 0


Query: 9   MTIGIGGGIGIGIGVPGIKVSIGGGIGIGSRKGGCKSHDPSKKWSQVPNAQADQVIINVA 68
           MT+GIGGGI IG+G+PGI +SIGGGIGI  RKGGCKSHDPSKKW+++ +   D  II +A
Sbjct: 1   MTLGIGGGISIGLGIPGINISIGGGIGIRGRKGGCKSHDPSKKWTEIKSVN-DPAIIEIA 60

Query: 69  NFAVAAFNQKYGNKLVFHAVLEAWVVVLPDGKKEYSIELVAKDCLNRCLYFHAIVIEIVG 128
            FAV  FNQK+GN L F AVLEAWVVV  DGKKEYSIELVAKDCL+RCL +HA+VIEI G
Sbjct: 61  KFAVKVFNQKHGNNLQFQAVLEAWVVVHVDGKKEYSIELVAKDCLHRCLQYHAVVIEICG 120

Query: 129 VPPGWNLFSFTQI 142
            PPGWNL SF QI
Sbjct: 121 TPPGWNLVSFNQI 132

[Close]

BLAST of CsaV3_7G007160 vs. ExPASy TrEMBL
Match: E5GCR5 (Phloem filament protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.6e-47
Identity = 96/133 (72.18%), Postives = 109/133 (81.95%), Query Frame = 0


Query: 9   MTIGIGGGIGIGIGVPGIKVSIGGGIGIGSRKGGCKSHDPSKKWSQVPNAQADQVIINVA 68
           MT+GIGGGI IG+G+PGI +SIGGGIGI  RKGGCKSHDPSKKW+++ +   D  II +A
Sbjct: 1   MTLGIGGGISIGLGIPGINISIGGGIGIRGRKGGCKSHDPSKKWTEIKSVN-DPAIIEIA 60

Query: 69  NFAVAAFNQKYGNKLVFHAVLEAWVVVLPDGKKEYSIELVAKDCLNRCLYFHAIVIEIVG 128
            FAV  FNQK+GN L F AVLEAWVVV  DGKKEYSIELVAKDCL+RCL +HA+VIEI G
Sbjct: 61  KFAVKVFNQKHGNNLQFQAVLEAWVVVHVDGKKEYSIELVAKDCLHRCLQYHAVVIEICG 120

Query: 129 VPPGWNLFSFTQI 142
            PPGWNL SF QI
Sbjct: 121 TPPGWNLVSFNQI 132

[Close]

BLAST of CsaV3_7G007160 vs. ExPASy TrEMBL
Match: A0A5A7SQL4 (Phloem filament protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G001810 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.5e-32
Identity = 83/136 (61.03%), Postives = 97/136 (71.32%), Query Frame = 0


Query: 9   MTIGIGGGIGIGIGVPGIKVSIGGGIGIGSRKGGCKSHDPSKKWSQVPNAQADQVIINVA 68
           MT+GIGG IGIG G+PG  +SIGGGIGIG RKGGCKSH+PSKKW Q+ N +A  V +  A
Sbjct: 1   MTLGIGGRIGIGFGLPGFNISIGGGIGIGGRKGGCKSHNPSKKWIQLHNVKAPDV-LEAA 60

Query: 69  NFAVAAFNQKYGNKLVFHAVLEAWVVVLPDGKKEYSIELVAKDCLNRCLYFHAIVIE-IV 128
            FAV AFN+KY N L F  V EAWV  + + +KEYSIELVAKDC +R L FHA+VIE  V
Sbjct: 61  KFAVDAFNKKYENNLEFQYVTEAWVHEV-NNEKEYSIELVAKDCFHRLLEFHAVVIEKTV 120

Query: 129 GVPPGWNLFSFTQISD 144
                W L SF +I D
Sbjct: 121 DHKKIWILVSFERIFD 134

The following BLAST results are available for this feature:

BLAST of CsaV3_7G007160 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8645826.1	1.1e-74	100.00	hypothetical protein Csa_017081 [Cucumis sativus]	[more]
XP_011658840.2	8.1e-70	100.00	uncharacterized protein LOC105436098 [Cucumis sativus]	[more]
TYK06875.1	6.7e-48	72.93	phloem filament protein [Cucumis melo var. makuwa]	[more]
ADN34263.1	3.3e-47	72.18	phloem filament protein [Cucumis melo subsp. melo] >KAA0031424.1 phloem filament...	[more]
ADN34264.1	3.0e-32	61.03	phloem filament protein [Cucumis melo subsp. melo] >KAA0031425.1 phloem filament...	[more]

BLAST of CsaV3_7G007160 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G007160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K477	8.5e-73	100.00	PP1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G067390 PE=4 SV...	[more]
A0A5D3C621	3.2e-48	72.93	Phloem filament protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SJV3	1.6e-47	72.18	Phloem filament protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
E5GCR5	1.6e-47	72.18	Phloem filament protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A5A7SQL4	1.5e-32	61.03	Phloem filament protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of CsaV3_7G007160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009994	Phloem filament PP1	PFAM	PF07430	PP1	coord: 64..125 e-value: 6.7E-10 score: 38.9
None	No IPR available	GENE3D	3.10.450.10		coord: 50..143 e-value: 6.5E-10 score: 40.9
None	No IPR available	SUPERFAMILY	54403	Cystatin/monellin	coord: 51..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G007160.1	CsaV3_7G007160.1	mRNA