CsaV3_7G006530 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_7G006530
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr7: 4051185 .. 4051487 (-)
RNA-Seq Expression	CsaV3_7G006530
Synteny	CsaV3_7G006530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGCCTGTATCCATTCTAAAGAAGAAGAAGAGATGAAGTCCATCCTTGGTAACCTCAAGGCTGGGAGGCTAATAGATGCGAGAGGGTTGATATTTTTGTTGGGAAGCTTGCACTGGCCCTTAGGTGCTCCTCTGACCTCCCTTTTGGTCTTGTTTACATGACTGAAATGACGTGTCAACAGAATTCGCATTGGTGTGAGCTATTTATAAGCTCCATCTTTTAACTCAAATATGTACAACATTGCTGGTGCTATGTGGTGGCTTTCGAGGCTGCAGACTGCTAATGTCGAACTTGACTAA

mRNA sequence

ATGAAAGCCTGTATCCATTCTAAAGAAGAAGAAGAGATGAAGTCCATCCTTGGTAACCTCAAGGCTGGGAGGCTAATAGATGCGAGAGGGTTGATATTTTTGTTGGGAAGCTTGCACTGGCCCTTAGCTCCATCTTTTAACTCAAATATGTACAACATTGCTGGTGCTATGTGGTGGCTTTCGAGGCTGCAGACTGCTAATGTCGAACTTGACTAA

Coding sequence (CDS)

ATGAAAGCCTGTATCCATTCTAAAGAAGAAGAAGAGATGAAGTCCATCCTTGGTAACCTCAAGGCTGGGAGGCTAATAGATGCGAGAGGGTTGATATTTTTGTTGGGAAGCTTGCACTGGCCCTTAGCTCCATCTTTTAACTCAAATATGTACAACATTGCTGGTGCTATGTGGTGGCTTTCGAGGCTGCAGACTGCTAATGTCGAACTTGACTAA

Protein sequence

MKACIHSKEEEEMKSILGNLKAGRLIDARGLIFLLGSLHWPLAPSFNSNMYNIAGAMWWLSRLQTANVELD*

Homology

[Close]

BLAST of CsaV3_7G006530 vs. NCBI nr
Match: KGN43721.1 (hypothetical protein Csa_017236 [Cucumis sativus])

HSP 1 Score: 149.4 bits (376), Expect = 1.2e-32
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MKACIHSKEEEEMKSILGNLKAGRLIDARGLIFLLGSLHWPLAPSFNSNMYNIAGAMWWL 60
          MKACIHSKEEEEMKSILGNLKAGRLIDARGLIFLLGSLHWPLAPSFNSNMYNIAGAMWWL
Sbjct: 1  MKACIHSKEEEEMKSILGNLKAGRLIDARGLIFLLGSLHWPLAPSFNSNMYNIAGAMWWL 60

Query: 61 SRLQTANVELD 72
          SRLQTANVELD
Sbjct: 61 SRLQTANVELD 71

[Close]

BLAST of CsaV3_7G006530 vs. ExPASy TrEMBL
Match: A0A0A0K7C7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G062870 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 5.6e-33
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MKACIHSKEEEEMKSILGNLKAGRLIDARGLIFLLGSLHWPLAPSFNSNMYNIAGAMWWL 60
          MKACIHSKEEEEMKSILGNLKAGRLIDARGLIFLLGSLHWPLAPSFNSNMYNIAGAMWWL
Sbjct: 1  MKACIHSKEEEEMKSILGNLKAGRLIDARGLIFLLGSLHWPLAPSFNSNMYNIAGAMWWL 60

Query: 61 SRLQTANVELD 72
          SRLQTANVELD
Sbjct: 61 SRLQTANVELD 71

The following BLAST results are available for this feature:

BLAST of CsaV3_7G006530 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN43721.1	1.2e-32	100.00	hypothetical protein Csa_017236 [Cucumis sativus]	[more]

BLAST of CsaV3_7G006530 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G006530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7C7	5.6e-33	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G062870 PE=4 SV=1	[more]

BLAST of CsaV3_7G006530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 63..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G006530.1	CsaV3_7G006530.1	mRNA