CsaV3_7G006480 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_7G006480
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	serine/arginine-rich splicing factor SC35
Location	chr7: 4013298 .. 4017615 (-)
RNA-Seq Expression	CsaV3_7G006480
Synteny	CsaV3_7G006480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACTTCTTTTCCAACGACTTTTCTTCTCCATCTTCTTTAACCCTAACCCTAATCTTCTTTCTCTTCCTCTTCCCTACTCAACATGTCTCACTTCGGAAGGTCCGGTCCTCCAGACATTACAGATACCTATTCGCTTCTCGTGCTCAACATCACCTTTCGTGCGTCTCTCTCTCTTTCATTTGTTTTCTGGTTCTGTATCTTATTCAGTTCCCACTCAGATTTTTACGTGGTTTTGTAGGTACCACTGCGGATGACCTCTACCCGCTTTTCCATAAGTATGGGAAGGTTGTGGATATCTTCATCCCCAGAGATCGAAGGTATAATTCCCGTCTCTGTTACATTTCTATACCCCTTTTCTTGTTATTATTATTTTTATATTCTTGAATTTGTTCGTTTTATGAAGGAGACGATTGAGGTATATTATATATATAATAGCTTGGAAGAGTTTCTTGTTAGTTAGGTTGAACGTTTAGGGGTTTACGATTGAATTGATTTCATTTTTATTGATATTTGTTTGGTTCTTATGGAATCAGTTTGTACGTGACGGTGAAATGATATTCTTCGTCAGCTTGAATGCTACTTGGACTTAGTTTGGATTTTTTTTGTCTCCTCTGTTTATTCATTTTTTTATTGGGAATACTTTATTCTCGTTTTGACTATTTTGTAATTTTCTTTTATATTATATTGTGGTTCAGGACTGGTGATTCAAGAGGCTTTGCATTTGTGCGTTACAAGTATGCAGATGAGGCCCAGAAAGCAGTGGAGAGGCTAGATGGTACACCAGCCACTTCTTTTTTTTGGTTTTTTTTTTCCGTCTCCTGTTTGATTTTGTTATTGTTCTCTCCACGTGCAAGTAATTTGTAGATATGAGTTACAAGGGGAATGCTTGATACTTTTGTTTGAGGAGAGAAGGTTGATTATTGATAGGGCGTTATTCAAATCAGTTTGGAGTTACAAGTTCTATTTTTTCTGAAATTGACGCATTCAGTTCACTGTTATTTCTGCTTTTGAATTTCAATTATGCCTCCATTCCTCACCGTTTGATAAATTCTTAATTTAGTTGGGTCAGGGACTAATCTGCTGCATGTAAATTTATAAACGGATATATGTTTATATATATTTTGATTCTGTTATGTTCCAGGCACTATGGTTGATGGACGAGAGATAACTGTTCAGTTTGCCAAATATGGTCCAAATGCAGAGAGGATGTGAGTAATGAAGTAGTGGTTTTTTTGCAATAAGTTCTCATATTTAGGCTTGACTTTTAACTTTAGATATATTTGCTTTGCTAATTTATATTGTATTCATGCTTTTAGTCACAAAGGGAAGATCAGTGAAGCATTTCCAAAGTCAAGATACAGGTCTAGAAGTCGAAGTCCAAGGAGACGGTAATTTTCTCTTCCACATCCACTGATCCCCCGGAAATTTCTTTTAAGATGCTATTTTTATTTTTTATATTTTTTTGACATTCAGATTGAATATTTGTTATCCTTGTCCTTGAAGAATCTAATTTGGTCATTGGTGTTTCTTGATGGAGTTATTATTTCACTAGCTTTAGATGTCAAAGGAAAAACCTCCTGTTGGCATAGGATATTTGAAAAAAATGATCCAGCCACATTTTTTGATCCCTCAGATTATTGTGGAACTGTTTCTGCTGTGGTTTATTGTTTACTTTGGCAAAGTTTCGTTTCTGCTATCTCAGATACAAGGTTCAAAGATATTGCGGCCATTGACTTTCATTTTGTACAGTAGCTAAGCTATGTCATGTTATTTAACATGAGATGCCATAATTGTGTAAATGTGAAATATTTTAAGATTTAAAAGGAGATTGTGGTAGTGTATTGCACTCTTCATATTGCTAGGAGTAGGTAGTGGCGCTCAAACCTTTTTTCATTCATGGATCCAGGTTTTGTCCATTTTTAAAGCCTCTTATTATTTCACTTGTTTGAATTCTGTACTGGCTAATCTAGTCCATTTATATTTTGATTTTTTCCCCCAAAATCAAGTTACTGATTGATTTTTTTTTTTCTTTCAGACATCGGGATGATTACAGAGATAAGGATTATAGGAGGAGAAGCAGAAGCAGAAGCAGAAGCAGAAGCTTGGACAAGAACGATCGTGATAGGCGTGGAAGAGAAAGGGAGAGGGAAAGAGACCATCGCAGACGAAGCCGGAGCATCAGTCCTAGGCGTCCTAGTCCTGATTACTCAAAGGGAAGGGGAAGAGGACGCTATGATGACGAGCGGAGAAGTCGTAGCCTCAGCCGTAGCCGAAGTCGTGGCCGTAGTCGTTCTGTGGACAGGTTGTGAAGTTGTAATTTTTATCGAATTGGACAGAAGTTGGGAATTTTATTACTAATAATCTTTATCTTGTTGGGTAAAAGTGGGGATTGGGGAATTTTGTTTCTAAACAGTGTCATTGTTTCGTATATTACAGTGGTTCTCCTGGTAGACGAAGCCCTAGTCCAAGAAGGAGTCCATCTCCTCGAAGGAGCCTCTCTCCTCGAAGGAGTCCATCTCCCAGGGAAGAAAGTCCTGAAAGAAATGGTAATGGTGTTGGAAGGTCTCCAACTTCTAGGAGTGTTTCACCAAGAGGTCGACCTGCTGATTCACGAAGCCCATCACCACAAAATTCAGATGATGTGAGTTGCTTTATGACTTATTTTTTATGATTAGACTAGACTTGGTTTAAGTAGTTAACTGTTCACTTGCTTAATATTGACAGAAGTGAATACGGATGGGAGGAGAACTGTGGACATAACCAAACAGTGCAGGAATGAATGCTTTGAGGACTTGTTGATTAAAAATGTTATCAGACTATAAATTCTAGTTTTGGTAGGACTTTCCTATGGTGTTCAATTCTCATATATTGAGCTTCATGTTCCTATCTACTATCTTGTATCAGTTTGATACTTTTTACCTCTGCAGTCTGTATCCTTATTTCCAGTCATAGGTTATAGCTTTGGGACATGTTCTTCCTTTATATTTCTGTTTCTCTACTCTGTAGTACCAGTACTACTTTGTTTTGAGCAATCGTGGTGTCTTTTTCTTTTCCTGTATTTTCTTTTTTTCTTTTTATATATTTGAGCTATCCTTATTCATCATGAATCCTCTATTGGATTTTATAGTTATGTTCGGGGTAAGAGTGACTGGCGCCTGATTGGCGGATGTTGATTTTGTGGCTGTTGATGCTGTTTCTATGTGATAGATGGGTGTTCGTGACTTTGATGCTGGTTGCAGCAGTTTGCTGACTTTATCAGTATGATTGTCTATGAAGTATGATGTTGCTGTGGGAAGTTTCTTAACTAATATTCACTGGATAGAATTGTTGGTAAGGTTTTTGGTCACGTTTAAATGTTTTTTAAAAACTTGATAATACGTTAGGATTTGATGTTTGACCTGATTATCCATTCTGGTCTATCCAAGTTTTGAAAGCACTTCACCCGCAAGGAGATCTAGAGGCCTTGATATATAGGTTTGACCCACCTATGTTGATCGATTTTTTTAACACATAGCTGATGATGCATTTGAGAGGTGTTATCGATTGATTTTAATGGTGAAAGTTGGTTCAAGAAAATTTAGCTGCAGGTTTGAACTTTAAGCCATCGTAACATAAGTTTATAGTTTTTCTATGTTATTTGAAGGGGTGGCTTCAAACTCACAGATTTACTATCCCAAACATTTAGATCAATCTCTTGCTGCTTGATGTGGTGACTGACTGTATTGTAGCTTTCGGATTACACAATTGGTGCTGTGCTGTTTGATAGCAGATACGTTTGTTGATGTACGATAGGACATGAGTTCGATTGGCTGTTGCTGCCCTTGTGGGGGGGTGAGGCTGGCAATGATGCTTCAGTTGCTTGGCAATGGCTGTATCGATGCTTGATTGATTTCCTTTAAATAGGAAGGGATCTGCATGTATAAAATGTCTTAACATCTCTCCTGTAAGAAAATTTATTTAATAAGAATTAAATTATAAATTTGCATAATTCGGTTCCATTGCTCACTTTGTTTCGGAGTTTGGTGAATACGGGGTGGCT

mRNA sequence

ATGTCTCACTTCGGAAGGTCCGGTCCTCCAGACATTACAGATACCTATTCGCTTCTCGTGCTCAACATCACCTTTCGTACCACTGCGGATGACCTCTACCCGCTTTTCCATAAGTATGGGAAGGTTGTGGATATCTTCATCCCCAGAGATCGAAGGACTGGTGATTCAAGAGGCTTTGCATTTGTGCGTTACAAGTATGCAGATGAGGCCCAGAAAGCAGTGGAGAGGCTAGATGGCACTATGGTTGATGGACGAGAGATAACTGTTCAGTTTGCCAAATATGGTCCAAATGCAGAGAGGATTCACAAAGGGAAGATCAGTGAAGCATTTCCAAAGTCAAGATACAGGTCTAGAAGTCGAAGTCCAAGGAGACGACATCGGGATGATTACAGAGATAAGGATTATAGGAGGAGAAGCAGAAGCAGAAGCAGAAGCAGAAGCTTGGACAAGAACGATCGTGATAGGCGTGGAAGAGAAAGGGAGAGGGAAAGAGACCATCGCAGACGAAGCCGGAGCATCAGTCCTAGGCGTCCTAGTCCTGATTACTCAAAGGGAAGGGGAAGAGGACGCTATGATGACGAGCGGAGAAGTCGTAGCCTCAGCCGTAGCCGAAGTCGTGGCCGTAGTCGTTCTGTGGACAGTGGTTCTCCTGGTAGACGAAGCCCTAGTCCAAGAAGGAGTCCATCTCCTCGAAGGAGCCTCTCTCCTCGAAGGAGTCCATCTCCCAGGGAAGAAAGTCCTGAAAGAAATGGTAATGGTGTTGGAAGGTCTCCAACTTCTAGGAGTGTTTCACCAAGAGGTCGACCTGCTGATTCACGAAGCCCATCACCACAAAATTCAGATGATAAGTGA

Coding sequence (CDS)

ATGTCTCACTTCGGAAGGTCCGGTCCTCCAGACATTACAGATACCTATTCGCTTCTCGTGCTCAACATCACCTTTCGTACCACTGCGGATGACCTCTACCCGCTTTTCCATAAGTATGGGAAGGTTGTGGATATCTTCATCCCCAGAGATCGAAGGACTGGTGATTCAAGAGGCTTTGCATTTGTGCGTTACAAGTATGCAGATGAGGCCCAGAAAGCAGTGGAGAGGCTAGATGGCACTATGGTTGATGGACGAGAGATAACTGTTCAGTTTGCCAAATATGGTCCAAATGCAGAGAGGATTCACAAAGGGAAGATCAGTGAAGCATTTCCAAAGTCAAGATACAGGTCTAGAAGTCGAAGTCCAAGGAGACGACATCGGGATGATTACAGAGATAAGGATTATAGGAGGAGAAGCAGAAGCAGAAGCAGAAGCAGAAGCTTGGACAAGAACGATCGTGATAGGCGTGGAAGAGAAAGGGAGAGGGAAAGAGACCATCGCAGACGAAGCCGGAGCATCAGTCCTAGGCGTCCTAGTCCTGATTACTCAAAGGGAAGGGGAAGAGGACGCTATGATGACGAGCGGAGAAGTCGTAGCCTCAGCCGTAGCCGAAGTCGTGGCCGTAGTCGTTCTGTGGACAGTGGTTCTCCTGGTAGACGAAGCCCTAGTCCAAGAAGGAGTCCATCTCCTCGAAGGAGCCTCTCTCCTCGAAGGAGTCCATCTCCCAGGGAAGAAAGTCCTGAAAGAAATGGTAATGGTGTTGGAAGGTCTCCAACTTCTAGGAGTGTTTCACCAAGAGGTCGACCTGCTGATTCACGAAGCCCATCACCACAAAATTCAGATGATAAGTGA

Protein sequence

MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSRSPRRRHRDDYRDKDYRRRSRSRSRSRSLDKNDRDRRGRERERERDHRRRSRSISPRRPSPDYSKGRGRGRYDDERRSRSLSRSRSRGRSRSVDSGSPGRRSPSPRRSPSPRRSLSPRRSPSPREESPERNGNGVGRSPTSRSVSPRGRPADSRSPSPQNSDDK*

Homology

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BLAST of CsaV3_7G006480 vs. NCBI nr
Match: XP_004136874.2 (serine/arginine-rich splicing factor SC35 [Cucumis sativus] >KGN43716.1 hypothetical protein Csa_017162 [Cucumis sativus])

HSP 1 Score: 518.8 bits (1335), Expect = 2.9e-143
Identity = 283/283 (100.00%), Postives = 283/283 (100.00%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR 120
           FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR
Sbjct: 61  FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR 120

Query: 121 SPRRRHRDDYRDKDYRRRSRSRSRSRSLDKNDRDRRGRERERERDHRRRSRSISPRRPSP 180
           SPRRRHRDDYRDKDYRRRSRSRSRSRSLDKNDRDRRGRERERERDHRRRSRSISPRRPSP
Sbjct: 121 SPRRRHRDDYRDKDYRRRSRSRSRSRSLDKNDRDRRGRERERERDHRRRSRSISPRRPSP 180

Query: 181 DYSKGRGRGRYDDERRSRSLSRSRSRGRSRSVDSGSPGRRSPSPRRSPSPRRSLSPRRSP 240
           DYSKGRGRGRYDDERRSRSLSRSRSRGRSRSVDSGSPGRRSPSPRRSPSPRRSLSPRRSP
Sbjct: 181 DYSKGRGRGRYDDERRSRSLSRSRSRGRSRSVDSGSPGRRSPSPRRSPSPRRSLSPRRSP 240

Query: 241 SPREESPERNGNGVGRSPTSRSVSPRGRPADSRSPSPQNSDDK 284
           SPREESPERNGNGVGRSPTSRSVSPRGRPADSRSPSPQNSDDK
Sbjct: 241 SPREESPERNGNGVGRSPTSRSVSPRGRPADSRSPSPQNSDDK 283

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BLAST of CsaV3_7G006480 vs. NCBI nr
Match: XP_008455209.1 (PREDICTED: serine/arginine-rich splicing factor SC35 [Cucumis melo])

HSP 1 Score: 507.3 bits (1305), Expect = 8.6e-140
Identity = 276/283 (97.53%), Postives = 282/283 (99.65%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR 120
           FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR
Sbjct: 61  FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR 120

Query: 121 SPRRRHRDDYRDKDYRRRSRSRSRSRSLDKNDRDRRGRERERERDHRRRSRSISPRRPSP 180
           SPRRR+RDDYRD+DYRRRSRSRSRSRSLD++DRDRRGRERERERDHRRRSRSISPRRPSP
Sbjct: 121 SPRRRYRDDYRDRDYRRRSRSRSRSRSLDRSDRDRRGRERERERDHRRRSRSISPRRPSP 180

Query: 181 DYSKGRGRGRYDDERRSRSLSRSRSRGRSRSVDSGSPGRRSPSPRRSPSPRRSLSPRRSP 240
           DYSKGRGRGRYDDERRSRS+SRSRSRGRSRSVDSGSPGRRSPSPRRSPSPRRSLSPRRSP
Sbjct: 181 DYSKGRGRGRYDDERRSRSVSRSRSRGRSRSVDSGSPGRRSPSPRRSPSPRRSLSPRRSP 240

Query: 241 SPREESPERNGNGVGRSPTSRSVSPRGRPADSRSPSPQNSDDK 284
           SPR+ESPERNGNG GRSPTSRSVSPRGRPADSRSPSPQNSDDK
Sbjct: 241 SPRDESPERNGNGGGRSPTSRSVSPRGRPADSRSPSPQNSDDK 283

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BLAST of CsaV3_7G006480 vs. NCBI nr
Match: XP_038888048.1 (serine/arginine-rich splicing factor SC35 [Benincasa hispida])

HSP 1 Score: 482.3 bits (1240), Expect = 3.0e-132
Identity = 266/283 (93.99%), Postives = 275/283 (97.17%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR 120
           FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRY+SRSR
Sbjct: 61  FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYKSRSR 120

Query: 121 SPRRRHRDDYRDKDYRRRSRSRSRSRSLDKNDRDRRGRERERERDHRRRSRSISPRRPSP 180
           SPRRR+RDDYRD+DYRRRSRSRSRSRS D++DRDRRGRE+ERER++RRRSRSISPRRPSP
Sbjct: 121 SPRRRYRDDYRDRDYRRRSRSRSRSRSFDRSDRDRRGREKEREREYRRRSRSISPRRPSP 180

Query: 181 DYSKGRGRGRYDDER--RSRSLSRSRSRGRSRSVDSGSPGRRSPSPRRSPSPRRSLSPRR 240
           DYSKGRGRGRYDDER  RSRS SRSRSRGRSRSVDSGSPGR+SPSPRRSPSPRRSLSPRR
Sbjct: 181 DYSKGRGRGRYDDERRSRSRSRSRSRSRGRSRSVDSGSPGRQSPSPRRSPSPRRSLSPRR 240

Query: 241 SPSPREESPERNGNGVGRSPTSRSVSPRGRPADSRSPSPQNSD 282
           SPSPR  SPERNGNG GRSPTSRSVSPRGRP DSRSPSPQNSD
Sbjct: 241 SPSPRGGSPERNGNGGGRSPTSRSVSPRGRPTDSRSPSPQNSD 283

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BLAST of CsaV3_7G006480 vs. NCBI nr
Match: XP_022927926.1 (serine/arginine-rich splicing factor SC35-like [Cucurbita moschata] >KAG6588771.1 Serine/arginine-rich splicing factor SC35, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 447.2 bits (1149), Expect = 1.1e-121
Identity = 256/293 (87.37%), Postives = 269/293 (91.81%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR 120
           FVRYKYADEAQKAV+RLDGT+VDGREITVQFAKYGPNAE+I KGKISE FPKSR+RSRSR
Sbjct: 61  FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAEKIQKGKISEPFPKSRHRSRSR 120

Query: 121 SPRRRHRDDYRDKDYRRRSRSRSRSRSLDKNDRDRRGRERERERDHRRRSRSISPRRPSP 180
           SPRRR+RDDYRD+DYRR  RSRSRSRSLD++DRDRRGRERERERD+RRRSRSISPRRPSP
Sbjct: 121 SPRRRYRDDYRDRDYRR--RSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSP 180

Query: 181 DYSKGRGRGRYDDERRSRSLSRSRSRGRSRSVDSGSPGRRSPSPRRSPSPR--------- 240
           DYSKGRGRGRY DERR+RS S SRSRGRSRSV+S SPGRRSPSPRRS SPR         
Sbjct: 181 DYSKGRGRGRYVDERRNRSRSHSRSRGRSRSVNSASPGRRSPSPRRSLSPRRSLSPRRSL 240

Query: 241 ---RSLSPRRSPSPREESPERNGNGVGRSPTSRSVSPRGRPADSRSPSPQNSD 282
              RSLSPRRSPSPR ESPERNG+G GRSPT RSVSPRG+PADSRSPSPQNSD
Sbjct: 241 SPQRSLSPRRSPSPRGESPERNGDG-GRSPTPRSVSPRGQPADSRSPSPQNSD 290

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BLAST of CsaV3_7G006480 vs. NCBI nr
Match: KAG7022543.1 (Serine/arginine-rich splicing factor SC35 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 445.7 bits (1145), Expect = 3.1e-121
Identity = 255/293 (87.03%), Postives = 269/293 (91.81%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR 120
           FVRYKYADEAQKAV+RLDGT+VDGREITVQFAKYGPNAE+I KGKISE FPKSR+RSRSR
Sbjct: 61  FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAEKIQKGKISEPFPKSRHRSRSR 120

Query: 121 SPRRRHRDDYRDKDYRRRSRSRSRSRSLDKNDRDRRGRERERERDHRRRSRSISPRRPSP 180
           SPRRR+RDDYRD+DYRR  RSRSRSRSLD++DRDRRGRERERERD+RRRSRSISPRRPSP
Sbjct: 121 SPRRRYRDDYRDRDYRR--RSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSP 180

Query: 181 DYSKGRGRGRYDDERRSRSLSRSRSRGRSRSVDSGSPGRRSP------------SPRRSP 240
           DYSKGRGRGRY DERR+RS S SRSRGRSRSV+S SPGRRSP            SPRRS 
Sbjct: 181 DYSKGRGRGRYVDERRNRSRSHSRSRGRSRSVNSASPGRRSPSPQRSLSPRRSLSPRRSL 240

Query: 241 SPRRSLSPRRSPSPREESPERNGNGVGRSPTSRSVSPRGRPADSRSPSPQNSD 282
           SP+RSLSPRRSPSPR ESPERNG+G GRSPT RSVSPRG+PADSRSPSPQNSD
Sbjct: 241 SPQRSLSPRRSPSPRGESPERNGDG-GRSPTPRSVSPRGQPADSRSPSPQNSD 290

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BLAST of CsaV3_7G006480 vs. ExPASy Swiss-Prot
Match: Q9FMG4 (Serine/arginine-rich splicing factor SC35 OS=Arabidopsis thaliana OX=3702 GN=SC35 PE=1 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 1.5e-70
Identity = 196/316 (62.03%), Postives = 212/316 (67.09%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDI+DTYSLLVLNITFRTTADDLYPLF KYGKVVD+FIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYR---- 120
           FVRYKY DEA KAVERLDG +VDGREITVQFAKYGPNAE+I KG++ E  PKSR      
Sbjct: 61  FVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSRSRS 120

Query: 121 -------------------SRSRSPRRRHRDDYRDKDYRRRSRSRSRSRSLDKNDRDRRG 180
                               RSRSPRRR RDDYR+KDYR+RSRSRS          DRR 
Sbjct: 121 PRRSRSPRRSRSPPRRRSPRRSRSPRRRSRDDYREKDYRKRSRSRS---------YDRRE 180

Query: 181 RERERERDHRRRSRSISPRRPSPDYSKGRGRGRYDDERRSRSLSRSRSRGRSRSVDSGSP 240
           R  E++RDHRRR+RS   R  SPD  K R RGRYD+E RS S S S S  R RS  S SP
Sbjct: 181 RHEEKDRDHRRRTRS---RSASPD-EKRRVRGRYDNESRSHSRSLSASPAR-RSPRSSSP 240

Query: 241 GRRSP---------SPRRSPSPRRSLSPR------RSPSPREESPERNGNGVGRSPTSRS 278
            + SP         S  RSPSPRRSLSPR       SPS +E SPER  N   RSP+  S
Sbjct: 241 QKTSPAREVSPDKRSNERSPSPRRSLSPRSPALQKASPS-KEMSPERRSN--ERSPSPGS 299

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BLAST of CsaV3_7G006480 vs. ExPASy Swiss-Prot
Match: P30352 (Serine/arginine-rich splicing factor 2 OS=Gallus gallus OX=9031 GN=SRSF2 PE=2 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 3.9e-26
Identity = 113/250 (45.20%), Postives = 140/250 (56.00%), Query Frame = 0


Query: 4   FGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFAFVR 63
           +GR  PPD+    SL V N+T+RT+ D L  +F KYG+V D++IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 64  YKYADEAQKAVERLDGTMVDGREITVQFAKYG--PNAERIHKGKISEAFPKSRYRSRSRS 123
           +    +A+ A++ +DG ++DGRE+ VQ A+YG  P++    +G     +  S Y  RSRS
Sbjct: 63  FHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGSSGYGRRSRS 122

Query: 124 PRRRHRDDYRDKDYRRRSRSRSRSRSLDKNDRDRRGRERERERDHRRRSRSISPRRPSPD 183
           PRRR R        R RSRSRSRSRS     R R  R + R R  R RSRS         
Sbjct: 123 PRRRRRS-------RSRSRSRSRSRS-----RSRYSRSKSRSRT-RSRSRST-------- 182

Query: 184 YSKGRGRGRYDDERRSRSLSRSRSRGRSRSVDSGSPGRRSPSPRRSPSPRRSLSPRRSPS 243
            SK R   R   +  S S SRSRSR RSRS        RSP P    S R S S  RS S
Sbjct: 183 -SKSRSARRSKSKSSSVSRSRSRSRSRSRS--------RSPPP---TSKRESNSRSRSKS 217

Query: 244 PREESPERNG 252
           P  +SPE  G
Sbjct: 243 P-PKSPEEEG 217

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BLAST of CsaV3_7G006480 vs. ExPASy Swiss-Prot
Match: Q3MHR5 (Serine/arginine-rich splicing factor 2 OS=Bos taurus OX=9913 GN=SRSF2 PE=2 SV=3)

HSP 1 Score: 119.4 bits (298), Expect = 6.6e-26
Identity = 109/242 (45.04%), Postives = 136/242 (56.20%), Query Frame = 0


Query: 4   FGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFAFVR 63
           +GR  PPD+    SL V N+T+RT+ D L  +F KYG+V D++IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 64  YKYADEAQKAVERLDGTMVDGREITVQFAKYG--PNAERIHKGKISEAFPKSRYRSRSRS 123
           +    +A+ A++ +DG ++DGRE+ VQ A+YG  P++    +G     +    Y  RSRS
Sbjct: 63  FHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRS 122

Query: 124 PRRRHRDDYRDKDYRRRSRSRSRSRSLDKNDRDRRGRERERERDHRRRSRSISPRRPSPD 183
           PRRR R        R RSRSRSRSRS     R R  R + R R  R RSRS         
Sbjct: 123 PRRRRRS-------RSRSRSRSRSRS-----RSRYSRSKSRSRT-RSRSRST-------- 182

Query: 184 YSKGRGRGRYDDERRSRSLSRSRSRGRSRSVDSGSPGRRSPSP---RRSPSPRRSLSPRR 241
            SK R   R   +  S S SRSRSR RSRS        RSP P   R S S  RS SP +
Sbjct: 183 -SKSRSARRSKSKSSSVSRSRSRSRSRSRS--------RSPPPVSKRESKSRSRSKSPPK 213

[Close]

BLAST of CsaV3_7G006480 vs. ExPASy Swiss-Prot
Match: Q01130 (Serine/arginine-rich splicing factor 2 OS=Homo sapiens OX=9606 GN=SRSF2 PE=1 SV=4)

HSP 1 Score: 119.4 bits (298), Expect = 6.6e-26
Identity = 109/242 (45.04%), Postives = 136/242 (56.20%), Query Frame = 0


Query: 4   FGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFAFVR 63
           +GR  PPD+    SL V N+T+RT+ D L  +F KYG+V D++IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 64  YKYADEAQKAVERLDGTMVDGREITVQFAKYG--PNAERIHKGKISEAFPKSRYRSRSRS 123
           +    +A+ A++ +DG ++DGRE+ VQ A+YG  P++    +G     +    Y  RSRS
Sbjct: 63  FHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRS 122

Query: 124 PRRRHRDDYRDKDYRRRSRSRSRSRSLDKNDRDRRGRERERERDHRRRSRSISPRRPSPD 183
           PRRR R        R RSRSRSRSRS     R R  R + R R  R RSRS         
Sbjct: 123 PRRRRRS-------RSRSRSRSRSRS-----RSRYSRSKSRSRT-RSRSRST-------- 182

Query: 184 YSKGRGRGRYDDERRSRSLSRSRSRGRSRSVDSGSPGRRSPSP---RRSPSPRRSLSPRR 241
            SK R   R   +  S S SRSRSR RSRS        RSP P   R S S  RS SP +
Sbjct: 183 -SKSRSARRSKSKSSSVSRSRSRSRSRSRS--------RSPPPVSKRESKSRSRSKSPPK 213

[Close]

BLAST of CsaV3_7G006480 vs. ExPASy Swiss-Prot
Match: Q62093 (Serine/arginine-rich splicing factor 2 OS=Mus musculus OX=10090 GN=Srsf2 PE=1 SV=4)

HSP 1 Score: 119.4 bits (298), Expect = 6.6e-26
Identity = 109/242 (45.04%), Postives = 136/242 (56.20%), Query Frame = 0


Query: 4   FGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFAFVR 63
           +GR  PPD+    SL V N+T+RT+ D L  +F KYG+V D++IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 64  YKYADEAQKAVERLDGTMVDGREITVQFAKYG--PNAERIHKGKISEAFPKSRYRSRSRS 123
           +    +A+ A++ +DG ++DGRE+ VQ A+YG  P++    +G     +    Y  RSRS
Sbjct: 63  FHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRS 122

Query: 124 PRRRHRDDYRDKDYRRRSRSRSRSRSLDKNDRDRRGRERERERDHRRRSRSISPRRPSPD 183
           PRRR R        R RSRSRSRSRS     R R  R + R R  R RSRS         
Sbjct: 123 PRRRRRS-------RSRSRSRSRSRS-----RSRYSRSKSRSRT-RSRSRST-------- 182

Query: 184 YSKGRGRGRYDDERRSRSLSRSRSRGRSRSVDSGSPGRRSPSP---RRSPSPRRSLSPRR 241
            SK R   R   +  S S SRSRSR RSRS        RSP P   R S S  RS SP +
Sbjct: 183 -SKSRSARRSKSKSSSVSRSRSRSRSRSRS--------RSPPPVSKRESKSRSRSKSPPK 213

[Close]

BLAST of CsaV3_7G006480 vs. ExPASy TrEMBL
Match: A0A0A0K7C0 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G062820 PE=4 SV=1)

HSP 1 Score: 518.8 bits (1335), Expect = 1.4e-143
Identity = 283/283 (100.00%), Postives = 283/283 (100.00%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR 120
           FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR
Sbjct: 61  FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR 120

Query: 121 SPRRRHRDDYRDKDYRRRSRSRSRSRSLDKNDRDRRGRERERERDHRRRSRSISPRRPSP 180
           SPRRRHRDDYRDKDYRRRSRSRSRSRSLDKNDRDRRGRERERERDHRRRSRSISPRRPSP
Sbjct: 121 SPRRRHRDDYRDKDYRRRSRSRSRSRSLDKNDRDRRGRERERERDHRRRSRSISPRRPSP 180

Query: 181 DYSKGRGRGRYDDERRSRSLSRSRSRGRSRSVDSGSPGRRSPSPRRSPSPRRSLSPRRSP 240
           DYSKGRGRGRYDDERRSRSLSRSRSRGRSRSVDSGSPGRRSPSPRRSPSPRRSLSPRRSP
Sbjct: 181 DYSKGRGRGRYDDERRSRSLSRSRSRGRSRSVDSGSPGRRSPSPRRSPSPRRSLSPRRSP 240

Query: 241 SPREESPERNGNGVGRSPTSRSVSPRGRPADSRSPSPQNSDDK 284
           SPREESPERNGNGVGRSPTSRSVSPRGRPADSRSPSPQNSDDK
Sbjct: 241 SPREESPERNGNGVGRSPTSRSVSPRGRPADSRSPSPQNSDDK 283

[Close]

BLAST of CsaV3_7G006480 vs. ExPASy TrEMBL
Match: A0A1S3C0I4 (serine/arginine-rich splicing factor SC35 OS=Cucumis melo OX=3656 GN=LOC103495427 PE=4 SV=1)

HSP 1 Score: 507.3 bits (1305), Expect = 4.2e-140
Identity = 276/283 (97.53%), Postives = 282/283 (99.65%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR 120
           FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR
Sbjct: 61  FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR 120

Query: 121 SPRRRHRDDYRDKDYRRRSRSRSRSRSLDKNDRDRRGRERERERDHRRRSRSISPRRPSP 180
           SPRRR+RDDYRD+DYRRRSRSRSRSRSLD++DRDRRGRERERERDHRRRSRSISPRRPSP
Sbjct: 121 SPRRRYRDDYRDRDYRRRSRSRSRSRSLDRSDRDRRGRERERERDHRRRSRSISPRRPSP 180

Query: 181 DYSKGRGRGRYDDERRSRSLSRSRSRGRSRSVDSGSPGRRSPSPRRSPSPRRSLSPRRSP 240
           DYSKGRGRGRYDDERRSRS+SRSRSRGRSRSVDSGSPGRRSPSPRRSPSPRRSLSPRRSP
Sbjct: 181 DYSKGRGRGRYDDERRSRSVSRSRSRGRSRSVDSGSPGRRSPSPRRSPSPRRSLSPRRSP 240

Query: 241 SPREESPERNGNGVGRSPTSRSVSPRGRPADSRSPSPQNSDDK 284
           SPR+ESPERNGNG GRSPTSRSVSPRGRPADSRSPSPQNSDDK
Sbjct: 241 SPRDESPERNGNGGGRSPTSRSVSPRGRPADSRSPSPQNSDDK 283

[Close]

BLAST of CsaV3_7G006480 vs. ExPASy TrEMBL
Match: A0A6J1EIV3 (serine/arginine-rich splicing factor SC35-like OS=Cucurbita moschata OX=3662 GN=LOC111434683 PE=4 SV=1)

HSP 1 Score: 447.2 bits (1149), Expect = 5.1e-122
Identity = 256/293 (87.37%), Postives = 269/293 (91.81%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR 120
           FVRYKYADEAQKAV+RLDGT+VDGREITVQFAKYGPNAE+I KGKISE FPKSR+RSRSR
Sbjct: 61  FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAEKIQKGKISEPFPKSRHRSRSR 120

Query: 121 SPRRRHRDDYRDKDYRRRSRSRSRSRSLDKNDRDRRGRERERERDHRRRSRSISPRRPSP 180
           SPRRR+RDDYRD+DYRR  RSRSRSRSLD++DRDRRGRERERERD+RRRSRSISPRRPSP
Sbjct: 121 SPRRRYRDDYRDRDYRR--RSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSP 180

Query: 181 DYSKGRGRGRYDDERRSRSLSRSRSRGRSRSVDSGSPGRRSPSPRRSPSPR--------- 240
           DYSKGRGRGRY DERR+RS S SRSRGRSRSV+S SPGRRSPSPRRS SPR         
Sbjct: 181 DYSKGRGRGRYVDERRNRSRSHSRSRGRSRSVNSASPGRRSPSPRRSLSPRRSLSPRRSL 240

Query: 241 ---RSLSPRRSPSPREESPERNGNGVGRSPTSRSVSPRGRPADSRSPSPQNSD 282
              RSLSPRRSPSPR ESPERNG+G GRSPT RSVSPRG+PADSRSPSPQNSD
Sbjct: 241 SPQRSLSPRRSPSPRGESPERNGDG-GRSPTPRSVSPRGQPADSRSPSPQNSD 290

[Close]

BLAST of CsaV3_7G006480 vs. ExPASy TrEMBL
Match: A0A6J1CKN2 (serine/arginine-rich splicing factor SC35 OS=Momordica charantia OX=3673 GN=LOC111012175 PE=4 SV=1)

HSP 1 Score: 444.5 bits (1142), Expect = 3.3e-121
Identity = 253/283 (89.40%), Postives = 265/283 (93.64%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR 120
           FVRYKYADEAQKAVERLDGT+VDGREITVQFAKYGPNAERIHKGKISEAF K RYRSRSR
Sbjct: 61  FVRYKYADEAQKAVERLDGTVVDGREITVQFAKYGPNAERIHKGKISEAFTKPRYRSRSR 120

Query: 121 SPRRRHRDDYRDKDYRRRSRSRSRSRSLDKNDRDRRGRERERERDHRRRSRSISPRRPSP 180
           SPRRR+RDD RD+DYRRRSRSRSRSRSLD++DRDRRGRERERERD+RRRSRSISPRRPSP
Sbjct: 121 SPRRRYRDDNRDRDYRRRSRSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSP 180

Query: 181 DYSKGRGRGRYDDER--RSRSLSRSRSRGRSRSVDSGSPGRRSPSPRRSPSPRRSLSPRR 240
           DYSKGRGRGRYDDER  RSRS SRS+SRG+SRSVDS SPG      RRS SPRRSLSP+R
Sbjct: 181 DYSKGRGRGRYDDERRSRSRSCSRSQSRGQSRSVDSASPG------RRSASPRRSLSPQR 240

Query: 241 SPSPREESPERNGNGVGRSPTSRSVSPRGRPADSRSPSPQNSD 282
           SPSPR ESP RNG+G GR+PT RSVSPRG+PADSRSPSPQNSD
Sbjct: 241 SPSPRGESPVRNGDG-GRTPTPRSVSPRGQPADSRSPSPQNSD 276

[Close]

BLAST of CsaV3_7G006480 vs. ExPASy TrEMBL
Match: A0A6J1JE82 (serine/arginine-rich splicing factor SC35-like OS=Cucurbita maxima OX=3661 GN=LOC111486086 PE=4 SV=1)

HSP 1 Score: 439.9 bits (1130), Expect = 8.2e-120
Identity = 254/299 (84.95%), Postives = 268/299 (89.63%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR 120
           FVRYKYADEAQKAV+RLDGT+VDGREITVQFAKYGPNAE+I KGKISE FPKSR+RSRSR
Sbjct: 61  FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAEKIQKGKISEPFPKSRHRSRSR 120

Query: 121 SPRRRHRDDYRDKDYRRRSRSRSRSRSLDKNDRDRRGRERERERDHRRRSRSISPRRPSP 180
           SPRRR+RD+YRD+DYRR  RSRSRSRSLD++DRDRRGRERERERD+RRRSRSISPRRPSP
Sbjct: 121 SPRRRYRDNYRDRDYRR--RSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSP 180

Query: 181 DYSKGRGRGRYDDERRSRSLSRSRSRGRSRSVDSGSPGRRSPSPRRSPSPR--------- 240
           DYSKGRGRGRY DERR+RS S SRSRGRSRSV+S SPGRRSPSPRRS SPR         
Sbjct: 181 DYSKGRGRGRYVDERRNRSRSHSRSRGRSRSVNSASPGRRSPSPRRSLSPRRSLSPRRSL 240

Query: 241 ---------RSLSPRRSPSPREESPERNGNGVGRSPTSRSVSPRGRPADSRSPSPQNSD 282
                    RSLSPRRSPSPR ESPERNG+G GRSPT RSVSPRG+ ADSRSPSPQNSD
Sbjct: 241 SPQRSLSPQRSLSPRRSPSPRGESPERNGDG-GRSPTPRSVSPRGQSADSRSPSPQNSD 296

[Close]

BLAST of CsaV3_7G006480 vs. TAIR 10
Match: AT5G64200.1 (ortholog of human splicing factor SC35 )

HSP 1 Score: 267.7 bits (683), Expect = 1.1e-71
Identity = 196/316 (62.03%), Postives = 212/316 (67.09%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDI+DTYSLLVLNITFRTTADDLYPLF KYGKVVD+FIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYR---- 120
           FVRYKY DEA KAVERLDG +VDGREITVQFAKYGPNAE+I KG++ E  PKSR      
Sbjct: 61  FVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSRSRS 120

Query: 121 -------------------SRSRSPRRRHRDDYRDKDYRRRSRSRSRSRSLDKNDRDRRG 180
                               RSRSPRRR RDDYR+KDYR+RSRSRS          DRR 
Sbjct: 121 PRRSRSPRRSRSPPRRRSPRRSRSPRRRSRDDYREKDYRKRSRSRS---------YDRRE 180

Query: 181 RERERERDHRRRSRSISPRRPSPDYSKGRGRGRYDDERRSRSLSRSRSRGRSRSVDSGSP 240
           R  E++RDHRRR+RS   R  SPD  K R RGRYD+E RS S S S S  R RS  S SP
Sbjct: 181 RHEEKDRDHRRRTRS---RSASPD-EKRRVRGRYDNESRSHSRSLSASPAR-RSPRSSSP 240

Query: 241 GRRSP---------SPRRSPSPRRSLSPR------RSPSPREESPERNGNGVGRSPTSRS 278
            + SP         S  RSPSPRRSLSPR       SPS +E SPER  N   RSP+  S
Sbjct: 241 QKTSPAREVSPDKRSNERSPSPRRSLSPRSPALQKASPS-KEMSPERRSN--ERSPSPGS 299

[Close]

BLAST of CsaV3_7G006480 vs. TAIR 10
Match: AT5G64200.2 (ortholog of human splicing factor SC35 )

HSP 1 Score: 267.7 bits (683), Expect = 1.1e-71
Identity = 196/316 (62.03%), Postives = 212/316 (67.09%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDI+DTYSLLVLNITFRTTADDLYPLF KYGKVVD+FIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYR---- 120
           FVRYKY DEA KAVERLDG +VDGREITVQFAKYGPNAE+I KG++ E  PKSR      
Sbjct: 61  FVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSRSRS 120

Query: 121 -------------------SRSRSPRRRHRDDYRDKDYRRRSRSRSRSRSLDKNDRDRRG 180
                               RSRSPRRR RDDYR+KDYR+RSRSRS          DRR 
Sbjct: 121 PRRSRSPRRSRSPPRRRSPRRSRSPRRRSRDDYREKDYRKRSRSRS---------YDRRE 180

Query: 181 RERERERDHRRRSRSISPRRPSPDYSKGRGRGRYDDERRSRSLSRSRSRGRSRSVDSGSP 240
           R  E++RDHRRR+RS   R  SPD  K R RGRYD+E RS S S S S  R RS  S SP
Sbjct: 181 RHEEKDRDHRRRTRS---RSASPD-EKRRVRGRYDNESRSHSRSLSASPAR-RSPRSSSP 240

Query: 241 GRRSP---------SPRRSPSPRRSLSPR------RSPSPREESPERNGNGVGRSPTSRS 278
            + SP         S  RSPSPRRSLSPR       SPS +E SPER  N   RSP+  S
Sbjct: 241 QKTSPAREVSPDKRSNERSPSPRRSLSPRSPALQKASPS-KEMSPERRSN--ERSPSPGS 299

[Close]

BLAST of CsaV3_7G006480 vs. TAIR 10
Match: AT1G55310.3 (SC35-like splicing factor 33 )

HSP 1 Score: 76.3 bits (186), Expect = 4.6e-14
Identity = 105/285 (36.84%), Postives = 133/285 (46.67%), Query Frame = 0


Query: 17  SLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTG------------DSRGFAFVRY 76
           SLLV N+      +DL   F ++G V DI++PRD  TG            D RGF FV++
Sbjct: 37  SLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGSHLCTDTCKASRDPRGFGFVQF 96

Query: 77  KYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSRSPRR 136
               +A  A   +DG ++ GRE+TV FA+   N ++  + +  E    SR+R R R+P R
Sbjct: 97  MDPADAADAKHHMDGYLLLGRELTVVFAE--ENRKKPTEMRARERGGGSRFRDRRRTPPR 156

Query: 137 RHRDDYRDKDYRRRSRSRSRSRSLDKNDRDRRGRERERERDH------RRRSRSISPRRP 196
            +                SRSRS       RRGR R R  D+      R   RSISPR  
Sbjct: 157 YY----------------SRSRS----PPPRRGRSRSRSGDYYSPPPRRHHPRSISPREE 216

Query: 197 SPDYSKGRGRGRYDDERRSRSLSRSRSRGRSRSVDSGSPGRRSPSPRRSPSPR--RSLSP 256
             D  +   R    D  R RSL+  R + RS S        RSP   RSPSP+  RS+SP
Sbjct: 217 RYDGRRSYSRSPASDGSRGRSLTPVRGKSRSLSPSPRRSISRSPRRSRSPSPKRNRSVSP 276

Query: 257 RRSPS---PREESPERNGNGVGRSPT-SRSVSPRGRPAD-SRSPS 277
           RRS S    R  SP R+       P  SRS SP G   D  RSPS
Sbjct: 277 RRSISRSPRRSRSPRRSRRSYTPEPARSRSQSPHGGQYDEDRSPS 299

[Close]

BLAST of CsaV3_7G006480 vs. TAIR 10
Match: AT1G55310.1 (SC35-like splicing factor 33 )

HSP 1 Score: 74.3 bits (181), Expect = 1.7e-13
Identity = 104/273 (38.10%), Postives = 130/273 (47.62%), Query Frame = 0


Query: 17  SLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVER 76
           SLLV N+      +DL   F ++G V DI++PRD  TGD RGF FV++    +A  A   
Sbjct: 37  SLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHH 96

Query: 77  LDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSRSPRRRHRDDYRDKDYR 136
           +DG ++ GRE+TV FA+                      R +    R R R   R +D R
Sbjct: 97  MDGYLLLGRELTVVFAE--------------------ENRKKPTEMRARERGGGRFRD-R 156

Query: 137 RRSRSRSRSRSLDKNDRDRRGRERERERDH------RRRSRSISPRRPSPDYSKGRGRGR 196
           RR+  R  SRS  ++   RRGR R R  D+      R   RSISPR    D  +   R  
Sbjct: 157 RRTPPRYYSRS--RSPPPRRGRSRSRSGDYYSPPPRRHHPRSISPREERYDGRRSYSRSP 216

Query: 197 YDDERRSRSLSRSRSRGRSRSVDSGSPGRRSPSPRRSPSPR--RSLSPRRSPS---PREE 256
             D  R RSL+  R + RS S        RSP   RSPSP+  RS+SPRRS S    R  
Sbjct: 217 ASDGSRGRSLTPVRGKSRSLSPSPRRSISRSPRRSRSPSPKRNRSVSPRRSISRSPRRSR 276

Query: 257 SPERNGNGVGRSPT-SRSVSPRGRPAD-SRSPS 277
           SP R+       P  SRS SP G   D  RSPS
Sbjct: 277 SPRRSRRSYTPEPARSRSQSPHGGQYDEDRSPS 286

[Close]

BLAST of CsaV3_7G006480 vs. TAIR 10
Match: AT3G13570.1 (SC35-like splicing factor 30A )

HSP 1 Score: 74.3 bits (181), Expect = 1.7e-13
Identity = 100/274 (36.50%), Postives = 137/274 (50.00%), Query Frame = 0


Query: 4   FGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFAFVR 63
           FG S   D+    SLLV N+      +DL   F ++G V DI++PRD  TGD RGF F++
Sbjct: 27  FGGSRDSDLPT--SLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQ 86

Query: 64  YKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKS-RYRSRSRSP 123
           +    +A +A  ++DG ++ GRE+TV FA+   N ++  + +  +   +S R++ R RSP
Sbjct: 87  FMDPADAAEAKHQMDGYLLLGRELTVVFAE--ENRKKPTEMRTRDRGGRSNRFQDRRRSP 146

Query: 124 RRRHRDDYRDKDYRRRSRSRSRSRSLDKNDRDRRGRERERERDHRRRSRSISPRRPSPDY 183
            R      R    RR  RSRSRSR  +                 R +SRS+SP+      
Sbjct: 147 PRYS----RSPPPRRGRRSRSRSRGYNSPPA------------KRHQSRSVSPQ------ 206

Query: 184 SKGRGRGRYDDERRSRSLSRSRSRGRSRSVDSGSPGRRSPSPRRSPSPRRSLSPRRSPSP 243
                  RY+ E   RS SRS     SR V SGSPGR     R   SPRRS+SPR++ S 
Sbjct: 207 -----DRRYEKE---RSYSRSPPHNGSR-VRSGSPGRVKSHSR---SPRRSVSPRKNRSY 261

Query: 244 REESPERNGNGVGRSPTSRSVSPRGRPADSRSPS 277
             E   R+ + V R   S +  PRG     RSPS
Sbjct: 267 TPEQ-ARSQSPVPRQSRSPTPVPRGAQNGDRSPS 261

The following BLAST results are available for this feature:

BLAST of CsaV3_7G006480 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004136874.2	2.9e-143	100.00	serine/arginine-rich splicing factor SC35 [Cucumis sativus] >KGN43716.1 hypothet...	[more]
XP_008455209.1	8.6e-140	97.53	PREDICTED: serine/arginine-rich splicing factor SC35 [Cucumis melo]	[more]
XP_038888048.1	3.0e-132	93.99	serine/arginine-rich splicing factor SC35 [Benincasa hispida]	[more]
XP_022927926.1	1.1e-121	87.37	serine/arginine-rich splicing factor SC35-like [Cucurbita moschata] >KAG6588771....	[more]
KAG7022543.1	3.1e-121	87.03	Serine/arginine-rich splicing factor SC35 [Cucurbita argyrosperma subsp. argyros...	[more]

BLAST of CsaV3_7G006480 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FMG4	1.5e-70	62.03	Serine/arginine-rich splicing factor SC35 OS=Arabidopsis thaliana OX=3702 GN=SC3...	[more]
P30352	3.9e-26	45.20	Serine/arginine-rich splicing factor 2 OS=Gallus gallus OX=9031 GN=SRSF2 PE=2 SV...	[more]
Q3MHR5	6.6e-26	45.04	Serine/arginine-rich splicing factor 2 OS=Bos taurus OX=9913 GN=SRSF2 PE=2 SV=3	[more]
Q01130	6.6e-26	45.04	Serine/arginine-rich splicing factor 2 OS=Homo sapiens OX=9606 GN=SRSF2 PE=1 SV=...	[more]
Q62093	6.6e-26	45.04	Serine/arginine-rich splicing factor 2 OS=Mus musculus OX=10090 GN=Srsf2 PE=1 SV...	[more]

BLAST of CsaV3_7G006480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7C0	1.4e-143	100.00	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G062820 PE=4 SV...	[more]
A0A1S3C0I4	4.2e-140	97.53	serine/arginine-rich splicing factor SC35 OS=Cucumis melo OX=3656 GN=LOC10349542...	[more]
A0A6J1EIV3	5.1e-122	87.37	serine/arginine-rich splicing factor SC35-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1CKN2	3.3e-121	89.40	serine/arginine-rich splicing factor SC35 OS=Momordica charantia OX=3673 GN=LOC1...	[more]
A0A6J1JE82	8.2e-120	84.95	serine/arginine-rich splicing factor SC35-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]

BLAST of CsaV3_7G006480 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G64200.1	1.1e-71	62.03	ortholog of human splicing factor SC35	[more]
AT5G64200.2	1.1e-71	62.03	ortholog of human splicing factor SC35	[more]
AT1G55310.3	4.6e-14	36.84	SC35-like splicing factor 33	[more]
AT1G55310.1	1.7e-13	38.10	SC35-like splicing factor 33	[more]
AT3G13570.1	1.7e-13	36.50	SC35-like splicing factor 30A	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 17..90 e-value: 6.6E-25 score: 98.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 18..88 e-value: 1.1E-20 score: 73.2
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 16..94 score: 19.297218
IPR003954	RNA recognition motif domain, eukaryote	SMART	SM00361	rrm2_1	coord: 17..90 e-value: 0.0057 score: 25.9
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 5..105 e-value: 1.5E-27 score: 98.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 252..276
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 210..236
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..283
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 145..168
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 181..200
None	No IPR available	PANTHER	PTHR23147:SF168	SERINE/ARGININE-RICH SPLICING FACTOR SC35-LIKE	coord: 1..282
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 1..282
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 9..100

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G006480.1	CsaV3_7G006480.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding