CsaV3_7G003730 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_7G003730
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Ubiquitin-like domain-containing protein
Location	chr7: 2781351 .. 2782011 (+)
RNA-Seq Expression	CsaV3_7G003730
Synteny	CsaV3_7G003730

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCATCCTTTAATTTTTCACTTTCTTCTCTTCCTACTATTATCACTAAAAATATTAATTATGTCAATATTATTATTCCATCATAATTAATTTTAAATCGTATGTGGCGGATGTGATGAAGTTGGTGGTGCAAAATTTGACTGGCTCTTTGTTCTTCGTGGAGGTTGAAGACGATGCCACTGTTTCTGATCTTAGAACTCAAATCAATGCTCATCCTCACCAACACAACCTCCCTTCTCACCGTTTGATCTTCATTCCCGACCACAATCCCGAACGTCTCATCTCCCAGGTCGATGATGGAATCTCACTCGTTGATTTTGGCTTACGTGATGGCTCCCACATTTACATCTTTTTCTCTCCCCTTCATGACGACGATGGTGATGACATTGAAGCTCGCCGATTCTTCTTTACTTCTTCTTCCGATCTTCTTCTCTTCTAAACTTCTATTATCATCATCATTCTAGTAACCCCCACCCCCGCCTTTCTCCTCTTTGTATGATCTATGAAAATTAGGGTTTTTTCTTTTCCTTTTTCAGATATTGTATTTATAATTTTCAACTCATTTTTGTACTACATCATACACAATTAATTCTTTATTCATCGGTTGAATTATTGTGGGGGTGAAGGTATGAGAAGTTACGTTTTGTTTTAATGTTATTTAAC

mRNA sequence

ATGAAGTTGGTGGTGCAAAATTTGACTGGCTCTTTGTTCTTCGTGGAGGTTGAAGACGATGCCACTGTTTCTGATCTTAGAACTCAAATCAATGCTCATCCTCACCAACACAACCTCCCTTCTCACCGTTTGATCTTCATTCCCGACCACAATCCCGAACGTCTCATCTCCCAGGTCGATGATGGAATCTCACTCGTTGATTTTGGCTTACGTGATGGCTCCCACATTTACATCTTTTTCTCTCCCCTTCATGACGACGATGGTGATGACATTGAAGCTCGCCGATTCTTCTTTACTTCTTCTTCCGATCTTCTTCTCTTCTAA

Coding sequence (CDS)

ATGAAGTTGGTGGTGCAAAATTTGACTGGCTCTTTGTTCTTCGTGGAGGTTGAAGACGATGCCACTGTTTCTGATCTTAGAACTCAAATCAATGCTCATCCTCACCAACACAACCTCCCTTCTCACCGTTTGATCTTCATTCCCGACCACAATCCCGAACGTCTCATCTCCCAGGTCGATGATGGAATCTCACTCGTTGATTTTGGCTTACGTGATGGCTCCCACATTTACATCTTTTTCTCTCCCCTTCATGACGACGATGGTGATGACATTGAAGCTCGCCGATTCTTCTTTACTTCTTCTTCCGATCTTCTTCTCTTCTAA

Protein sequence

MKLVVQNLTGSLFFVEVEDDATVSDLRTQINAHPHQHNLPSHRLIFIPDHNPERLISQVDDGISLVDFGLRDGSHIYIFFSPLHDDDGDDIEARRFFFTSSSDLLLF*

Homology

[Close]

BLAST of CsaV3_7G003730 vs. NCBI nr
Match: KGN43536.1 (hypothetical protein Csa_020453 [Cucumis sativus])

HSP 1 Score: 220.3 bits (560), Expect = 8.0e-54
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MKLVVQNLTGSLFFVEVEDDATVSDLRTQINAHPHQHNLPSHRLIFIPDHNPERLISQVD 60
           MKLVVQNLTGSLFFVEVEDDATVSDLRTQINAHPHQHNLPSHRLIFIPDHNPERLISQVD
Sbjct: 1   MKLVVQNLTGSLFFVEVEDDATVSDLRTQINAHPHQHNLPSHRLIFIPDHNPERLISQVD 60

Query: 61  DGISLVDFGLRDGSHIYIFFSPLHDDDGDDIEARRFFFTSSSDLLLF 108
           DGISLVDFGLRDGSHIYIFFSPLHDDDGDDIEARRFFFTSSSDLLLF
Sbjct: 61  DGISLVDFGLRDGSHIYIFFSPLHDDDGDDIEARRFFFTSSSDLLLF 107

[Close]

BLAST of CsaV3_7G003730 vs. NCBI nr
Match: XP_022989504.1 (uncharacterized protein LOC111486561 [Cucurbita maxima])

HSP 1 Score: 140.6 bits (353), Expect = 8.0e-30
Identity = 73/107 (68.22%), Postives = 87/107 (81.31%), Query Frame = 0


Query: 1   MKLVVQNLTGSLFFVEVEDDATVSDLRTQINAHPHQHNLPSHRLIFIPDHNPERLISQVD 60
           MKLV +NLTGSLF+VEV+D ATV DLRT+I++   Q +LPS RL+F+PDH+  RLIS  D
Sbjct: 1   MKLVAENLTGSLFYVEVDDGATVLDLRTEISS---QQSLPSDRLLFVPDHDRGRLISVAD 60

Query: 61  DGISLVDFGLRDGSHIYIFFSPLHDDDGDDIEARRFFFTSSSDLLLF 108
           DGISLVDFGLRDGS IYIFF PL DD GDD++AR+ FF +  DLLLF
Sbjct: 61  DGISLVDFGLRDGSLIYIFFCPLDDDGGDDVDARQLFF-NCPDLLLF 103

[Close]

BLAST of CsaV3_7G003730 vs. NCBI nr
Match: KAG6589175.1 (hypothetical protein SDJN03_17740, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 133.3 bits (334), Expect = 1.3e-27
Identity = 69/107 (64.49%), Postives = 85/107 (79.44%), Query Frame = 0


Query: 1   MKLVVQNLTGSLFFVEVEDDATVSDLRTQINAHPHQHNLPSHRLIFIPDHNPERLISQVD 60
           MKLV +NLTGSLF+VEV+D ATV DLRT+I++   Q +LPS RL+F+PDH+  RLIS  D
Sbjct: 1   MKLVAENLTGSLFYVEVDDGATVLDLRTEISS---QQSLPSDRLLFVPDHDRGRLISAAD 60

Query: 61  DGISLVDFGLRDGSHIYIFFSPLHDDDGDDIEARRFFFTSSSDLLLF 108
           DG SLVDFGLRDGS IY+FF PL D+  DD++AR+ FF +  DLLLF
Sbjct: 61  DGTSLVDFGLRDGSLIYVFFCPLDDEGVDDLDARQLFF-NCPDLLLF 103

[Close]

BLAST of CsaV3_7G003730 vs. NCBI nr
Match: XP_022930696.1 (uncharacterized protein LOC111437093 [Cucurbita moschata])

HSP 1 Score: 131.7 bits (330), Expect = 3.7e-27
Identity = 68/107 (63.55%), Postives = 85/107 (79.44%), Query Frame = 0


Query: 1   MKLVVQNLTGSLFFVEVEDDATVSDLRTQINAHPHQHNLPSHRLIFIPDHNPERLISQVD 60
           MKLV +NLTGSLF+VEV+D ATV DLRT+I++   Q +LPS RL+F+PDH+  RLIS  D
Sbjct: 1   MKLVAENLTGSLFYVEVDDGATVLDLRTEISS---QQSLPSDRLLFVPDHDRGRLISAAD 60

Query: 61  DGISLVDFGLRDGSHIYIFFSPLHDDDGDDIEARRFFFTSSSDLLLF 108
           DG SLVDFGLRDGS IY+FF PL ++  DD++AR+ FF +  DLLLF
Sbjct: 61  DGTSLVDFGLRDGSLIYVFFCPLDEEGVDDLDARQLFF-NCPDLLLF 103

[Close]

BLAST of CsaV3_7G003730 vs. NCBI nr
Match: XP_022136124.1 (uncharacterized protein LOC111007894 [Momordica charantia])

HSP 1 Score: 125.9 bits (315), Expect = 2.0e-25
Identity = 69/114 (60.53%), Postives = 84/114 (73.68%), Query Frame = 0


Query: 1   MKLVVQNLTGSLFFVEVEDDATVSDLRTQINAHPHQHNLPSHRLIFIPDHNPERLISQVD 60
           MKL V+NLTGSLF ++V+DDATVSDL+ +I+AH H ++LPS RLIFI D NP R IS+ D
Sbjct: 1   MKLAVENLTGSLFHIQVKDDATVSDLKAEISAH-HNNDLPSDRLIFIADDNPGRPISKDD 60

Query: 61  DGISLVDFGLRDGSHIYIFFSPL-HDDDGD--------DIEARRFFFTSSSDLL 106
           DG SLVD G++DGSHIYIFF PL H+DD D        D  +R FFFT  + LL
Sbjct: 61  DGFSLVDCGVKDGSHIYIFFHPLDHEDDRDHGGDDPDQDHHSRLFFFTCHNILL 113

[Close]

BLAST of CsaV3_7G003730 vs. ExPASy TrEMBL
Match: A0A0A0K6V6 (Ubiquitin-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G044270 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 3.9e-54
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MKLVVQNLTGSLFFVEVEDDATVSDLRTQINAHPHQHNLPSHRLIFIPDHNPERLISQVD 60
           MKLVVQNLTGSLFFVEVEDDATVSDLRTQINAHPHQHNLPSHRLIFIPDHNPERLISQVD
Sbjct: 1   MKLVVQNLTGSLFFVEVEDDATVSDLRTQINAHPHQHNLPSHRLIFIPDHNPERLISQVD 60

Query: 61  DGISLVDFGLRDGSHIYIFFSPLHDDDGDDIEARRFFFTSSSDLLLF 108
           DGISLVDFGLRDGSHIYIFFSPLHDDDGDDIEARRFFFTSSSDLLLF
Sbjct: 61  DGISLVDFGLRDGSHIYIFFSPLHDDDGDDIEARRFFFTSSSDLLLF 107

[Close]

BLAST of CsaV3_7G003730 vs. ExPASy TrEMBL
Match: A0A6J1JPI4 (uncharacterized protein LOC111486561 OS=Cucurbita maxima OX=3661 GN=LOC111486561 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 3.9e-30
Identity = 73/107 (68.22%), Postives = 87/107 (81.31%), Query Frame = 0


Query: 1   MKLVVQNLTGSLFFVEVEDDATVSDLRTQINAHPHQHNLPSHRLIFIPDHNPERLISQVD 60
           MKLV +NLTGSLF+VEV+D ATV DLRT+I++   Q +LPS RL+F+PDH+  RLIS  D
Sbjct: 1   MKLVAENLTGSLFYVEVDDGATVLDLRTEISS---QQSLPSDRLLFVPDHDRGRLISVAD 60

Query: 61  DGISLVDFGLRDGSHIYIFFSPLHDDDGDDIEARRFFFTSSSDLLLF 108
           DGISLVDFGLRDGS IYIFF PL DD GDD++AR+ FF +  DLLLF
Sbjct: 61  DGISLVDFGLRDGSLIYIFFCPLDDDGGDDVDARQLFF-NCPDLLLF 103

[Close]

BLAST of CsaV3_7G003730 vs. ExPASy TrEMBL
Match: A0A6J1ERN4 (uncharacterized protein LOC111437093 OS=Cucurbita moschata OX=3662 GN=LOC111437093 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.8e-27
Identity = 68/107 (63.55%), Postives = 85/107 (79.44%), Query Frame = 0


Query: 1   MKLVVQNLTGSLFFVEVEDDATVSDLRTQINAHPHQHNLPSHRLIFIPDHNPERLISQVD 60
           MKLV +NLTGSLF+VEV+D ATV DLRT+I++   Q +LPS RL+F+PDH+  RLIS  D
Sbjct: 1   MKLVAENLTGSLFYVEVDDGATVLDLRTEISS---QQSLPSDRLLFVPDHDRGRLISAAD 60

Query: 61  DGISLVDFGLRDGSHIYIFFSPLHDDDGDDIEARRFFFTSSSDLLLF 108
           DG SLVDFGLRDGS IY+FF PL ++  DD++AR+ FF +  DLLLF
Sbjct: 61  DGTSLVDFGLRDGSLIYVFFCPLDEEGVDDLDARQLFF-NCPDLLLF 103

[Close]

BLAST of CsaV3_7G003730 vs. ExPASy TrEMBL
Match: A0A6J1C3E5 (uncharacterized protein LOC111007894 OS=Momordica charantia OX=3673 GN=LOC111007894 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 9.9e-26
Identity = 69/114 (60.53%), Postives = 84/114 (73.68%), Query Frame = 0


Query: 1   MKLVVQNLTGSLFFVEVEDDATVSDLRTQINAHPHQHNLPSHRLIFIPDHNPERLISQVD 60
           MKL V+NLTGSLF ++V+DDATVSDL+ +I+AH H ++LPS RLIFI D NP R IS+ D
Sbjct: 1   MKLAVENLTGSLFHIQVKDDATVSDLKAEISAH-HNNDLPSDRLIFIADDNPGRPISKDD 60

Query: 61  DGISLVDFGLRDGSHIYIFFSPL-HDDDGD--------DIEARRFFFTSSSDLL 106
           DG SLVD G++DGSHIYIFF PL H+DD D        D  +R FFFT  + LL
Sbjct: 61  DGFSLVDCGVKDGSHIYIFFHPLDHEDDRDHGGDDPDQDHHSRLFFFTCHNILL 113

[Close]

BLAST of CsaV3_7G003730 vs. ExPASy TrEMBL
Match: A0A5D3BP45 (Phosphoglucan phosphatase LSF1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1545G00410 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 5.1e-22
Identity = 58/74 (78.38%), Postives = 63/74 (85.14%), Query Frame = 0


Query: 27  RTQINAHPHQHNLPSHRLIFIPDHNPERLISQVDDGISLVDFGLRDGSHIYIFFSPLHDD 86
           RTQI A  HQ NLPSH LIFI DH+PERLIS+VDD ISLVDFGL DGS+IYIFF PL +D
Sbjct: 575 RTQIIA--HQRNLPSHCLIFILDHDPERLISEVDDKISLVDFGLHDGSNIYIFFCPLDND 634

Query: 87  DGDDIEARRFFFTS 101
            GDDIEARRFFFT+
Sbjct: 635 GGDDIEARRFFFTT 646

[Close]

BLAST of CsaV3_7G003730 vs. TAIR 10
Match: AT2G32360.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 52.0 bits (123), Expect = 3.5e-07
Identity = 30/81 (37.04%), Postives = 47/81 (58.02%), Query Frame = 0


Query: 1  MKLVVQNLTGSLFFVEVEDDATVSDLRTQINAHPHQHNLPSHRLIF-IPDHNPERLISQV 60
          MK+ V+ +TG+    +V +DATV  ++ +I     +  LP  RLI  I D    RL+ + 
Sbjct: 1  MKVSVEIITGTFIDTDVSEDATVKQMKEKIAV---EVKLPVTRLILVIGDEETRRLVMED 60

Query: 61 DDGISLVDFGLRDGSHIYIFF 81
          +D + L D G+ + SHIY+FF
Sbjct: 61 EDDMMLRDLGVGEDSHIYLFF 78

The following BLAST results are available for this feature:

BLAST of CsaV3_7G003730 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN43536.1	8.0e-54	100.00	hypothetical protein Csa_020453 [Cucumis sativus]	[more]
XP_022989504.1	8.0e-30	68.22	uncharacterized protein LOC111486561 [Cucurbita maxima]	[more]
KAG6589175.1	1.3e-27	64.49	hypothetical protein SDJN03_17740, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022930696.1	3.7e-27	63.55	uncharacterized protein LOC111437093 [Cucurbita moschata]	[more]
XP_022136124.1	2.0e-25	60.53	uncharacterized protein LOC111007894 [Momordica charantia]	[more]

BLAST of CsaV3_7G003730 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G003730 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6V6	3.9e-54	100.00	Ubiquitin-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G044...	[more]
A0A6J1JPI4	3.9e-30	68.22	uncharacterized protein LOC111486561 OS=Cucurbita maxima OX=3661 GN=LOC111486561...	[more]
A0A6J1ERN4	1.8e-27	63.55	uncharacterized protein LOC111437093 OS=Cucurbita moschata OX=3662 GN=LOC1114370...	[more]
A0A6J1C3E5	9.9e-26	60.53	uncharacterized protein LOC111007894 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]
A0A5D3BP45	5.1e-22	78.38	Phosphoglucan phosphatase LSF1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]

BLAST of CsaV3_7G003730 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G32360.1	3.5e-07	37.04	Ubiquitin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.20.90		coord: 1..80 e-value: 1.1E-7 score: 33.5
IPR000626	Ubiquitin-like domain	PROSITE	PS50053	UBIQUITIN_2	coord: 1..78 score: 10.070333
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 1..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G003730.1	CsaV3_7G003730.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding