CsaV3_7G003160 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_7G003160
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	translation initiation factor IF-2 isoform X1
Location	chr7: 2359674 .. 2361257 (+)
RNA-Seq Expression	CsaV3_7G003160
Synteny	CsaV3_7G003160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTGTCCTGACCCGTCCCACCCCCAGACCCATTACCTCGCCTCAACCCCTTTCCCCTCAACCCCAGTCTCGACCTTCATCCGCCGATCATCGTCCTGTTCCGGATCACCCTCGTCCGCAATCCGATTCCGATTCGATCTCTCTTCGCCCTCTCGGTCGGACCGGTACCGGTGCGATCGCTCCCTCTCCGATTCCGGTGTTGGAGAAGGACAGGGAGATTACCCCTCCGGTTGTGACGTTGCATAAGCCGGAGAAATTTGTGCCCCCTCATCTTCGGGCGGGGTTCGTCGGGAAGGAGGAGAGACCTGTGAACGTTGGGATCCGATCTAGGGAAGGGAACCAGAGGCAGTACGGGAATTATGGGTCTTCGGGCCGGTACGGTGAAGATGGGCGGCCGAAATCCGGTGGTGGGTATGAGAGGATGAAAGAGGTGGGTGAGGCAGATCTGGGGGCGATGGTGAATCGGCCAAGATCCAGTGGGAATCGGCCGAGTTCTAGTGGATGGTATGTTTCTGTCAAGTACTTGCTCTTTTTAAATTCTATGTCGTGGTTAATTAATTGGGATTGTGGAGCATAAACGTGTAGTTAATCGTACTTAAAAATGAACTATTTTGGCCCTGCATTTTGGGTATAGAATTGCCTTCTTTGGATGCCCTTTTACCATGTCACCGAGATTCTGCCGGGCTGCTGGCTATGGCTTTTTAGGAGAGTTTCTCTGTGATGTTCTCTCATGATTATAGATTAGATGGATCCTTTTGTCTCAATGAATTGGGATTATTGATAATTTGATACACAAAGGCTTGGTTAATACAGGCACTGGATTTTAGGTATGGTATGGAATTGCCTTATTTGAGTGCACTTTTATCATGACACTAGATGCTGTTGGGCCTTTGGCTATGGCTTTTTGATTCATACGACACTCCCTTCATGTTTGTTGGCTTTGAGATGAATCGCTTTAATCCCATGATTACAAAGTAGACGGATCCTTCTGTCTCAATGAATTAGGATCATTGATACAACCATGTAGCTAATTTTGGCATTGGATTTTAGGTATGGAAATTGTAATTGCCTTATTACCTTTTTACCAAGATAGTGAGATGCTCTTGTTTATGGGTTTTTATTTTTTTTTTATTTTTATGAGATTCTCTTGATTCTGAAGAGCTGTGCGGATTGAATCAAACTATTTAATCTCATGAATAAATCATAGAGCAGATGGCTCCTTATGTTTCCTGTTTTTCGACTGTTGAGTGTTGGCCATTAACGTGTAAGGTTCTCTTAGGAAAGAAGAACATTGGCTGCCTAAGTTGTTTTTCTTTGATTACAAACCTTTTTTAGAATGCAGAATGTTCTATGAGCATGAAGAGGTTCAACTTTTGGACTTGTGTTTAATTGTTTTCCTCGGGTCGTGTCACTGGCTTGTGACATTTTTTTTTAATCAAGGGGTGCTTCATATAGATTTGGGAGTTCTAGTATATGTAACATGGATTTGAAGAAGTTTGAGAACGAGATGATGTGTTTGTGTGAGATGCTTGATTTAGATCGTGTATTGGACATTCTCTTTGTGGGCTTTACATTTTCATAG

mRNA sequence

ATGCTTGTCCTGACCCGTCCCACCCCCAGACCCATTACCTCGCCTCAACCCCTTTCCCCTCAACCCCAGTCTCGACCTTCATCCGCCGATCATCGTCCTGTTCCGGATCACCCTCGTCCGCAATCCGATTCCGATTCGATCTCTCTTCGCCCTCTCGGTCGGACCGGTACCGGTGCGATCGCTCCCTCTCCGATTCCGGTGTTGGAGAAGGACAGGGAGATTACCCCTCCGGTTGTGACGTTGCATAAGCCGGAGAAATTTGTGCCCCCTCATCTTCGGGCGGGGTTCGTCGGGAAGGAGGAGAGACCTGTGAACGTTGGGATCCGATCTAGGGAAGGGAACCAGAGGCAGTACGGGAATTATGGGTCTTCGGGCCGGTACGGTGAAGATGGGCGGCCGAAATCCGGTGGTGGGTATGAGAGGATGAAAGAGGTGGGTGAGGCAGATCTGGGGGCGATGGTGAATCGGCCAAGATCCAGTGGGAATCGGCCGAGTTCTAGTGGATGGGGTGCTTCATATAGATTTGGGAGTTCTAGTATATGTAACATGGATTTGAAGAAGTTTGAGAACGAGATGATGTGTTTGTGTGAGATGCTTGATTTAGATCGTGTATTGGACATTCTCTTTGTGGGCTTTACATTTTCATAG

Coding sequence (CDS)

ATGCTTGTCCTGACCCGTCCCACCCCCAGACCCATTACCTCGCCTCAACCCCTTTCCCCTCAACCCCAGTCTCGACCTTCATCCGCCGATCATCGTCCTGTTCCGGATCACCCTCGTCCGCAATCCGATTCCGATTCGATCTCTCTTCGCCCTCTCGGTCGGACCGGTACCGGTGCGATCGCTCCCTCTCCGATTCCGGTGTTGGAGAAGGACAGGGAGATTACCCCTCCGGTTGTGACGTTGCATAAGCCGGAGAAATTTGTGCCCCCTCATCTTCGGGCGGGGTTCGTCGGGAAGGAGGAGAGACCTGTGAACGTTGGGATCCGATCTAGGGAAGGGAACCAGAGGCAGTACGGGAATTATGGGTCTTCGGGCCGGTACGGTGAAGATGGGCGGCCGAAATCCGGTGGTGGGTATGAGAGGATGAAAGAGGTGGGTGAGGCAGATCTGGGGGCGATGGTGAATCGGCCAAGATCCAGTGGGAATCGGCCGAGTTCTAGTGGATGGGGTGCTTCATATAGATTTGGGAGTTCTAGTATATGTAACATGGATTTGAAGAAGTTTGAGAACGAGATGATGTGTTTGTGTGAGATGCTTGATTTAGATCGTGTATTGGACATTCTCTTTGTGGGCTTTACATTTTCATAG

Protein sequence

MLVLTRPTPRPITSPQPLSPQPQSRPSSADHRPVPDHPRPQSDSDSISLRPLGRTGTGAIAPSPIPVLEKDREITPPVVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRSREGNQRQYGNYGSSGRYGEDGRPKSGGGYERMKEVGEADLGAMVNRPRSSGNRPSSSGWGASYRFGSSSICNMDLKKFENEMMCLCEMLDLDRVLDILFVGFTFS*

Homology

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BLAST of CsaV3_7G003160 vs. NCBI nr
Match: KAE8645729.1 (hypothetical protein Csa_020239 [Cucumis sativus])

HSP 1 Score: 424.9 bits (1091), Expect = 4.3e-115
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 0


Query: 1   MLVLTRPTPRPITSPQPLSPQPQSRPSSADHRPVPDHPRPQSDSDSISLRPLGRTGTGAI 60
           MLVLTRPTPRPITSPQPLSPQPQSRPSSADHRPVPDHPRPQSDSDSISLRPLGRTGTGAI
Sbjct: 1   MLVLTRPTPRPITSPQPLSPQPQSRPSSADHRPVPDHPRPQSDSDSISLRPLGRTGTGAI 60

Query: 61  APSPIPVLEKDREITPPVVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRSREGNQRQYGN 120
           APSPIPVLEKDREITPPVVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRSREGNQRQYGN
Sbjct: 61  APSPIPVLEKDREITPPVVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRSREGNQRQYGN 120

Query: 121 YGSSGRYGEDGRPKSGGGYERMKEVGEADLGAMVNRPRSSGNRPSSSGWGASYRFGSSSI 180
           YGSSGRYGEDGRPKSGGGYERMKEVGEADLGAMVNRPRSSGNRPSSSGWGASYRFGSSSI
Sbjct: 121 YGSSGRYGEDGRPKSGGGYERMKEVGEADLGAMVNRPRSSGNRPSSSGWGASYRFGSSSI 180

Query: 181 CNMDLKKFENEMMCLCEMLDLDRVLDILFVGFTFS 216
           CNMDLKKFENEMMCLCEMLDLDRVLDILFVGFTFS
Sbjct: 181 CNMDLKKFENEMMCLCEMLDLDRVLDILFVGFTFS 215

[Close]

BLAST of CsaV3_7G003160 vs. NCBI nr
Match: XP_004144518.1 (uncharacterized protein LOC101206223 [Cucumis sativus])

HSP 1 Score: 328.6 bits (841), Expect = 4.2e-86
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MLVLTRPTPRPITSPQPLSPQPQSRPSSADHRPVPDHPRPQSDSDSISLRPLGRTGTGAI 60
           MLVLTRPTPRPITSPQPLSPQPQSRPSSADHRPVPDHPRPQSDSDSISLRPLGRTGTGAI
Sbjct: 62  MLVLTRPTPRPITSPQPLSPQPQSRPSSADHRPVPDHPRPQSDSDSISLRPLGRTGTGAI 121

Query: 61  APSPIPVLEKDREITPPVVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRSREGNQRQYGN 120
           APSPIPVLEKDREITPPVVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRSREGNQRQYGN
Sbjct: 122 APSPIPVLEKDREITPPVVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRSREGNQRQYGN 181

Query: 121 YGSSGRYGEDGRPKSGGGYERMKEVGEADLGAMVNRPRSSGNRPSSSG 169
           YGSSGRYGEDGRPKSGGGYERMKEVGEADLGAMVNRPRSSGNRPSSSG
Sbjct: 182 YGSSGRYGEDGRPKSGGGYERMKEVGEADLGAMVNRPRSSGNRPSSSG 229

[Close]

BLAST of CsaV3_7G003160 vs. NCBI nr
Match: XP_008455486.1 (PREDICTED: translation initiation factor IF-2 isoform X1 [Cucumis melo] >XP_008455487.1 PREDICTED: translation initiation factor IF-2 isoform X2 [Cucumis melo])

HSP 1 Score: 308.1 bits (788), Expect = 5.8e-80
Identity = 160/168 (95.24%), Postives = 162/168 (96.43%), Query Frame = 0


Query: 1   MLVLTRPTPRPITSPQPLSPQPQSRPSSADHRPVPDHPRPQSDSDSISLRPLGRTGTGAI 60
           MLVLTRPTP+PITSPQ LSPQPQSRPSSADHRPVPD PRPQSDSDSISLRPLGRTGTGAI
Sbjct: 62  MLVLTRPTPKPITSPQVLSPQPQSRPSSADHRPVPDQPRPQSDSDSISLRPLGRTGTGAI 121

Query: 61  APSPIPVLEKDREITPPVVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRSREGNQRQYGN 120
           APSPI  LEK+REITPPVVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRSREGNQRQYGN
Sbjct: 122 APSPITGLEKNREITPPVVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRSREGNQRQYGN 181

Query: 121 YGSSGRYGEDGRPKSGGGYERMKEVGEADLGAMVNRPRSSGNRPSSSG 169
           YGSS RYGEDGRPKSGGGYERMK VGEADLGAMVNRPRSSGNRPSSSG
Sbjct: 182 YGSSSRYGEDGRPKSGGGYERMKGVGEADLGAMVNRPRSSGNRPSSSG 229

[Close]

BLAST of CsaV3_7G003160 vs. NCBI nr
Match: XP_038888443.1 (translation initiation factor IF-2 isoform X1 [Benincasa hispida])

HSP 1 Score: 290.4 bits (742), Expect = 1.3e-74
Identity = 153/171 (89.47%), Postives = 156/171 (91.23%), Query Frame = 0


Query: 1   MLVLTRPTPRPITSPQPLSPQPQSRPSSADHRPVPDHPR-PQSDSDSISLRPLGRTGTGA 60
           MLVLTRPTP+PITSP PLSPQPQ RP SADHRPVPD  R PQSDSDSISLRPLGRTGTG 
Sbjct: 66  MLVLTRPTPKPITSPPPLSPQPQYRPPSADHRPVPDQTRPPQSDSDSISLRPLGRTGTGG 125

Query: 61  IAPSPIPVLEKDREITPP-VVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRSREGNQRQY 120
           IAPSPIP LEKD+EITPP  VTLHKPEKFVPPHLRAGFVGKEERPVNVGIRSRE NQRQY
Sbjct: 126 IAPSPIPSLEKDKEITPPAAVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRSREANQRQY 185

Query: 121 GNYGSSGRYGEDGRPKSGGGYERMKEVGEADLGAMVNRPRSSGNRPSSSGW 170
           GNYGS  RYGEDGRPKSGGGYERMK  GEA+LGAMVNRPRSSGNRPSSSGW
Sbjct: 186 GNYGSPSRYGEDGRPKSGGGYERMKGAGEANLGAMVNRPRSSGNRPSSSGW 236

[Close]

BLAST of CsaV3_7G003160 vs. NCBI nr
Match: XP_038888444.1 (putative protein TPRXL isoform X2 [Benincasa hispida])

HSP 1 Score: 286.2 bits (731), Expect = 2.4e-73
Identity = 152/170 (89.41%), Postives = 155/170 (91.18%), Query Frame = 0


Query: 1   MLVLTRPTPRPITSPQPLSPQPQSRPSSADHRPVPDHPR-PQSDSDSISLRPLGRTGTGA 60
           MLVLTRPTP+PITSP PLSPQPQ RP SADHRPVPD  R PQSDSDSISLRPLGRTGTG 
Sbjct: 66  MLVLTRPTPKPITSPPPLSPQPQYRPPSADHRPVPDQTRPPQSDSDSISLRPLGRTGTGG 125

Query: 61  IAPSPIPVLEKDREITPP-VVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRSREGNQRQY 120
           IAPSPIP LEKD+EITPP  VTLHKPEKFVPPHLRAGFVGKEERPVNVGIRSRE NQRQY
Sbjct: 126 IAPSPIPSLEKDKEITPPAAVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRSREANQRQY 185

Query: 121 GNYGSSGRYGEDGRPKSGGGYERMKEVGEADLGAMVNRPRSSGNRPSSSG 169
           GNYGS  RYGEDGRPKSGGGYERMK  GEA+LGAMVNRPRSSGNRPSSSG
Sbjct: 186 GNYGSPSRYGEDGRPKSGGGYERMKGAGEANLGAMVNRPRSSGNRPSSSG 235

[Close]

BLAST of CsaV3_7G003160 vs. ExPASy TrEMBL
Match: A0A0A0K3D7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G039270 PE=4 SV=1)

HSP 1 Score: 334.3 bits (856), Expect = 3.7e-88
Identity = 170/175 (97.14%), Postives = 172/175 (98.29%), Query Frame = 0


Query: 1   MLVLTRPTPRPITSPQPLSPQPQSRPSSADHRPVPDHPRPQSDSDSISLRPLGRTGTGAI 60
           MLVLTRPTPRPITSPQPLSPQPQSRPSSADHRPVPDHPRPQSDSDSISLRPLGRTGTGAI
Sbjct: 62  MLVLTRPTPRPITSPQPLSPQPQSRPSSADHRPVPDHPRPQSDSDSISLRPLGRTGTGAI 121

Query: 61  APSPIPVLEKDREITPPVVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRSREGNQRQYGN 120
           APSPIPVLEKDREITPPVVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRSREGNQRQYGN
Sbjct: 122 APSPIPVLEKDREITPPVVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRSREGNQRQYGN 181

Query: 121 YGSSGRYGEDGRPKSGGGYERMKEVGEADLGAMVNRPRSSGNRPSSSGWGASYRF 176
           YGSSGRYGEDGRPKSGGGYERMKEVGEADLGAMVNRPRSSGNRPSSSGW  S ++
Sbjct: 182 YGSSGRYGEDGRPKSGGGYERMKEVGEADLGAMVNRPRSSGNRPSSSGWYVSVKY 236

[Close]

BLAST of CsaV3_7G003160 vs. ExPASy TrEMBL
Match: A0A1S3C160 (translation initiation factor IF-2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495638 PE=4 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 2.8e-80
Identity = 160/168 (95.24%), Postives = 162/168 (96.43%), Query Frame = 0


Query: 1   MLVLTRPTPRPITSPQPLSPQPQSRPSSADHRPVPDHPRPQSDSDSISLRPLGRTGTGAI 60
           MLVLTRPTP+PITSPQ LSPQPQSRPSSADHRPVPD PRPQSDSDSISLRPLGRTGTGAI
Sbjct: 62  MLVLTRPTPKPITSPQVLSPQPQSRPSSADHRPVPDQPRPQSDSDSISLRPLGRTGTGAI 121

Query: 61  APSPIPVLEKDREITPPVVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRSREGNQRQYGN 120
           APSPI  LEK+REITPPVVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRSREGNQRQYGN
Sbjct: 122 APSPITGLEKNREITPPVVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRSREGNQRQYGN 181

Query: 121 YGSSGRYGEDGRPKSGGGYERMKEVGEADLGAMVNRPRSSGNRPSSSG 169
           YGSS RYGEDGRPKSGGGYERMK VGEADLGAMVNRPRSSGNRPSSSG
Sbjct: 182 YGSSSRYGEDGRPKSGGGYERMKGVGEADLGAMVNRPRSSGNRPSSSG 229

[Close]

BLAST of CsaV3_7G003160 vs. ExPASy TrEMBL
Match: A0A6J1GJZ3 (uncharacterized protein LOC111455051 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111455051 PE=4 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 1.0e-69
Identity = 144/175 (82.29%), Postives = 152/175 (86.86%), Query Frame = 0


Query: 1   MLVLTRPTPRPITSPQPLSPQPQSRPSSADHRPVPDHPRPQSDSDSISLRPLGRTGTGAI 60
           MLVLTRPTP+PI+SP  LSPQPQSR  SAD RPV D  RPQ +SDSISLRPLGRTGTGAI
Sbjct: 62  MLVLTRPTPKPISSPPVLSPQPQSRSPSADPRPVADQTRPQCESDSISLRPLGRTGTGAI 121

Query: 61  APSPIPVLEKDREITPPVVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRSREGNQRQYGN 120
           APSPIP LEKD+EI PP VTLHKPEKFVPPHLRAGFVGKEERPV+VGIRSRE NQRQYGN
Sbjct: 122 APSPIPNLEKDKEIPPPTVTLHKPEKFVPPHLRAGFVGKEERPVSVGIRSREANQRQYGN 181

Query: 121 YGSSGRYGEDGRPKSGGGYERMKEVGEADLGAMVNRPRSSGNRPSSSGWGASYRF 176
           YGS GRYGEDGRPKSGG YERM   GEAD GAMVNRPRSSGNRP+SSG  ++  F
Sbjct: 182 YGSPGRYGEDGRPKSGGAYERMNGAGEADQGAMVNRPRSSGNRPNSSGCASTDSF 236

[Close]

BLAST of CsaV3_7G003160 vs. ExPASy TrEMBL
Match: A0A6J1GK55 (uncharacterized protein LOC111455051 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111455051 PE=4 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 1.3e-69
Identity = 143/168 (85.12%), Postives = 149/168 (88.69%), Query Frame = 0


Query: 1   MLVLTRPTPRPITSPQPLSPQPQSRPSSADHRPVPDHPRPQSDSDSISLRPLGRTGTGAI 60
           MLVLTRPTP+PI+SP  LSPQPQSR  SAD RPV D  RPQ +SDSISLRPLGRTGTGAI
Sbjct: 62  MLVLTRPTPKPISSPPVLSPQPQSRSPSADPRPVADQTRPQCESDSISLRPLGRTGTGAI 121

Query: 61  APSPIPVLEKDREITPPVVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRSREGNQRQYGN 120
           APSPIP LEKD+EI PP VTLHKPEKFVPPHLRAGFVGKEERPV+VGIRSRE NQRQYGN
Sbjct: 122 APSPIPNLEKDKEIPPPTVTLHKPEKFVPPHLRAGFVGKEERPVSVGIRSREANQRQYGN 181

Query: 121 YGSSGRYGEDGRPKSGGGYERMKEVGEADLGAMVNRPRSSGNRPSSSG 169
           YGS GRYGEDGRPKSGG YERM   GEAD GAMVNRPRSSGNRP+SSG
Sbjct: 182 YGSPGRYGEDGRPKSGGAYERMNGAGEADQGAMVNRPRSSGNRPNSSG 229

[Close]

BLAST of CsaV3_7G003160 vs. ExPASy TrEMBL
Match: A0A6J1I0F0 (uncharacterized protein LOC111468300 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111468300 PE=4 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 4.2e-68
Identity = 141/169 (83.43%), Postives = 146/169 (86.39%), Query Frame = 0


Query: 1   MLVLTRPTPRPITSPQPLSPQPQSRPSSADHRPVPDHPRPQSDSDSISLRPLGRTGTGAI 60
           MLVLTRPTP+PI+S   LSPQPQSR  SAD RPV D   PQ +SDSISLRPLGRTGTGAI
Sbjct: 63  MLVLTRPTPKPISSLPVLSPQPQSRSPSADPRPVADQTHPQCESDSISLRPLGRTGTGAI 122

Query: 61  APSPIPVLEKDREITPPVVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRSREGNQRQYGN 120
           APSPIP LEKD+EI PP VTLHKPEKFVPPHLRAGFVGKEERPVNVGIRSRE NQRQYGN
Sbjct: 123 APSPIPNLEKDKEIPPPTVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRSREANQRQYGN 182

Query: 121 YGSSGRYGEDGRPKSGGGYERMKEVGEADLGAMVNRPRSSGNRPSSSGW 170
           YGS GRYGEDGRPKSGG  ERM   GEAD G MVNRPRSSGNRP+SSGW
Sbjct: 183 YGSPGRYGEDGRPKSGGANERMNGAGEADQGEMVNRPRSSGNRPNSSGW 231

[Close]

BLAST of CsaV3_7G003160 vs. TAIR 10
Match: AT3G54680.1 (proteophosphoglycan-related )

HSP 1 Score: 79.0 bits (193), Expect = 5.4e-15
Identity = 73/187 (39.04%), Postives = 96/187 (51.34%), Query Frame = 0


Query: 1   MLVLTRPTPRPITSPQPLSPQPQSRPSSADHRPVPDHPRPQSDSD----SISLRPLGRTG 60
           MLVLT+ +P+P+ SP   S  P +  ++      P  P  Q+ SD     ISLRPLG TG
Sbjct: 44  MLVLTKSSPKPLRSP---SAAPTTTTTAPPISTAPRIPSNQAISDPDPSQISLRPLGHTG 103

Query: 61  TGAIAPSPI--PVLEKDREIT--PPVVTLHKPEKFVPPHLRAGFVGKEERP--------- 120
           + +    PI  P + K  E+    PV    KP++FVPPHLR GFV K+E+P         
Sbjct: 104 SSSSLSFPIRTPEINKAPEVNAPTPVSLSPKPDRFVPPHLRPGFVRKDEKPGLNSSRVRD 163

Query: 121 VNVGIRSREGNQRQ--YGNYGSSGRYGEDGRPKSGGGYERMKEVGEADLGAMVNRPRSSG 169
            N  +  R  NQ Q     +G    YG+ GRPKS GGYER++             PR +G
Sbjct: 164 PNPNLNQRLPNQEQPRQEYFG----YGQPGRPKS-GGYERIR-----------TDPRITG 211

The following BLAST results are available for this feature:

BLAST of CsaV3_7G003160 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8645729.1	4.3e-115	100.00	hypothetical protein Csa_020239 [Cucumis sativus]	[more]
XP_004144518.1	4.2e-86	100.00	uncharacterized protein LOC101206223 [Cucumis sativus]	[more]
XP_008455486.1	5.8e-80	95.24	PREDICTED: translation initiation factor IF-2 isoform X1 [Cucumis melo] >XP_0084...	[more]
XP_038888443.1	1.3e-74	89.47	translation initiation factor IF-2 isoform X1 [Benincasa hispida]	[more]
XP_038888444.1	2.4e-73	89.41	putative protein TPRXL isoform X2 [Benincasa hispida]	[more]

BLAST of CsaV3_7G003160 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G003160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K3D7	3.7e-88	97.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G039270 PE=4 SV=1	[more]
A0A1S3C160	2.8e-80	95.24	translation initiation factor IF-2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A6J1GJZ3	1.0e-69	82.29	uncharacterized protein LOC111455051 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1GK55	1.3e-69	85.12	uncharacterized protein LOC111455051 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1I0F0	4.2e-68	83.43	uncharacterized protein LOC111468300 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of CsaV3_7G003160 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G54680.1	5.4e-15	39.04	proteophosphoglycan-related	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..72
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 110..140

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G003160.1	CsaV3_7G003160.1	mRNA