CsaV3_7G000150 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_7G000150
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Oxidative stress 3
Location	chr7: 305548 .. 306333 (+)
RNA-Seq Expression	CsaV3_7G000150
Synteny	CsaV3_7G000150

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ACTTAATTCAATTCCTTCTCCTTTCTCTTTATAATTATTGCAAAAATGGAAGATAAAGGAAACAGCATGATGGCTTTTGATATGGGTTCTCTTAGAACAAATCTTCCTCAAAAGTAAGCAATTCATCCATATACGTTTTTATGTAAATTCTTCCAATAATTATGTGCCTAATTTTTCACTATTCAAATATTCTTTTTTATTTGAATCTATTTTTAGTTAGCATCTACTTTTGCAGAAGCTTACGTAATAGTAAAATCACATTTTGTGATCAAGTGACAATTTTTTTTTATTATTATTATTCTTTCGAGTTTTAACCAACACTTCAAACATAGACGTTAGATATTACACAATCGTTTATAACAATAATGTTATTTGTTGGTGTTTTGAGTATAGGAGAGGTTTATCGAGATACTATTCTGGAAAAGCAAGATCATTTGCTTGCATAGCCGATGTTCGAAGTGTAGAAGATTTGAAGAAACCAAAACATCCTGATGCTAAGAAAAGGAAGAAACATTCTGATATCAAAGAAATAATAATCAATGTTCCTCCCTTTCATTGTCGACGAGTTTCTTCTCACTGTTCCGTTCCCTTCATTGCCACATGAATAATACACACTCTCTCCTAAACTAATTTTCTCAAAAGACTGAGTATAATTCGAATATCTAAAGCTTTGGTCCAAGGGAATAATAATAGCTTATAATCTAGTTGAACTATGTTTAAGTTTGTAATGGTTTTAATTTATGTTGTTCTTTATTTCCTTGATCATGTGTATATTGAAAAACTGTA

mRNA sequence

ATGGAAGATAAAGGAAACAGCATGATGGCTTTTGATATGGGTTCTCTTAGAACAAATCTTCCTCAAAAGAGAGGTTTATCGAGATACTATTCTGGAAAAGCAAGATCATTTGCTTGCATAGCCGATGTTCGAAGTGTAGAAGATTTGAAGAAACCAAAACATCCTGATGCTAAGAAAAGGAAGAAACATTCTGATATCAAAGAAATAATAATCAATGTTCCTCCCTTTCATTGTCGACGAGTTTCTTCTCACTGTTCCGTTCCCTTCATTGCCACATGA

Coding sequence (CDS)

ATGGAAGATAAAGGAAACAGCATGATGGCTTTTGATATGGGTTCTCTTAGAACAAATCTTCCTCAAAAGAGAGGTTTATCGAGATACTATTCTGGAAAAGCAAGATCATTTGCTTGCATAGCCGATGTTCGAAGTGTAGAAGATTTGAAGAAACCAAAACATCCTGATGCTAAGAAAAGGAAGAAACATTCTGATATCAAAGAAATAATAATCAATGTTCCTCCCTTTCATTGTCGACGAGTTTCTTCTCACTGTTCCGTTCCCTTCATTGCCACATGA

Protein sequence

MEDKGNSMMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKRKKHSDIKEIIINVPPFHCRRVSSHCSVPFIAT*

Homology

[Close]

BLAST of CsaV3_7G000150 vs. NCBI nr
Match: KGN43154.1 (hypothetical protein Csa_020555 [Cucumis sativus])

HSP 1 Score: 190.7 bits (483), Expect = 5.8e-45
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MEDKGNSMMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKR 60
          MEDKGNSMMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKR
Sbjct: 1  MEDKGNSMMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKR 60

Query: 61 KKHSDIKEIIINVPPFHCRRVSSHCSVPFIAT 93
          KKHSDIKEIIINVPPFHCRRVSSHCSVPFIAT
Sbjct: 61 KKHSDIKEIIINVPPFHCRRVSSHCSVPFIAT 92

[Close]

BLAST of CsaV3_7G000150 vs. NCBI nr
Match: KAA0033797.1 (hypothetical protein E6C27_scaffold142G00550 [Cucumis melo var. makuwa] >TYK22337.1 hypothetical protein E5676_scaffold1428G00540 [Cucumis melo var. makuwa])

HSP 1 Score: 165.2 bits (417), Expect = 2.6e-37
Identity = 81/85 (95.29%), Postives = 81/85 (95.29%), Query Frame = 0


Query: 8  MMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKRKKHSDIK 67
          MMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKRKKHSD K
Sbjct: 1  MMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKRKKHSDCK 60

Query: 68 EIIINVPPFHCRRVSSHCSVPFIAT 93
          E I NVPPFHCRR SSHCSVPFIAT
Sbjct: 61 E-ITNVPPFHCRRASSHCSVPFIAT 84

[Close]

BLAST of CsaV3_7G000150 vs. NCBI nr
Match: KAG6588432.1 (hypothetical protein SDJN03_16997, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 143.3 bits (360), Expect = 1.1e-30
Identity = 72/93 (77.42%), Postives = 78/93 (83.87%), Query Frame = 0


Query: 1  MEDKGNSMMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKR 60
          M+D+GN+MMAFDM SL  NLPQKRGLSRYYSGKARSFACIAD R VEDLKKP HPDAKKR
Sbjct: 1  MKDQGNNMMAFDMSSLGANLPQKRGLSRYYSGKARSFACIADARCVEDLKKPTHPDAKKR 60

Query: 61 KKHSDIKEIIINVPPFHCRRVSS-HCSVPFIAT 93
          KKHSD K   I+V P HCRR SS HCS+PF A+
Sbjct: 61 KKHSDCKG--IHVSPHHCRRASSTHCSIPFFAS 91

[Close]

BLAST of CsaV3_7G000150 vs. NCBI nr
Match: TQE06317.1 (hypothetical protein C1H46_008086 [Malus baccata])

HSP 1 Score: 122.9 bits (307), Expect = 1.5e-24
Identity = 61/90 (67.78%), Postives = 73/90 (81.11%), Query Frame = 0


Query: 4  KGNSMMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKRKKH 63
          +G +M AFDMG+LRT LPQKRGLSRYYSGK+RSF C+ADVRSVEDLKKP++PDAKKRKKH
Sbjct: 2  EGENMRAFDMGALRTGLPQKRGLSRYYSGKSRSFTCMADVRSVEDLKKPENPDAKKRKKH 61

Query: 64 SDIKEIIINV-PPFHCRRVSS--HCSVPFI 91
          S+ K   +   PP+ CRRVSS   C+ P +
Sbjct: 62 SERKNFPVPAYPPYPCRRVSSTTQCTAPCV 91

[Close]

BLAST of CsaV3_7G000150 vs. NCBI nr
Match: ONH91050.1 (hypothetical protein PRUPE_8G090300 [Prunus persica])

HSP 1 Score: 121.7 bits (304), Expect = 3.3e-24
Identity = 62/91 (68.13%), Postives = 74/91 (81.32%), Query Frame = 0


Query: 4  KGNSMMAFDMGSLRTNLPQKR-GLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKRKK 63
          +G++M AFDMG+LRTNLPQKR GLSRYYSGK+RSF C+ DVRSVEDLKKP+HPDAKKRKK
Sbjct: 2  EGDNMRAFDMGTLRTNLPQKRSGLSRYYSGKSRSFTCMDDVRSVEDLKKPEHPDAKKRKK 61

Query: 64 HSDIKEI-IINVPPFHCRRVSS--HCSVPFI 91
          HS+ K   +   PP+ CRRVSS   C+ P +
Sbjct: 62 HSERKNFPVPTYPPYPCRRVSSTTQCAAPCV 92

[Close]

BLAST of CsaV3_7G000150 vs. ExPASy TrEMBL
Match: A0A0A0K2B1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G004070 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 2.8e-45
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MEDKGNSMMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKR 60
          MEDKGNSMMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKR
Sbjct: 1  MEDKGNSMMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKR 60

Query: 61 KKHSDIKEIIINVPPFHCRRVSSHCSVPFIAT 93
          KKHSDIKEIIINVPPFHCRRVSSHCSVPFIAT
Sbjct: 61 KKHSDIKEIIINVPPFHCRRVSSHCSVPFIAT 92

[Close]

BLAST of CsaV3_7G000150 vs. ExPASy TrEMBL
Match: A0A5A7SX13 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1428G00540 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 1.3e-37
Identity = 81/85 (95.29%), Postives = 81/85 (95.29%), Query Frame = 0


Query: 8  MMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKRKKHSDIK 67
          MMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKRKKHSD K
Sbjct: 1  MMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKRKKHSDCK 60

Query: 68 EIIINVPPFHCRRVSSHCSVPFIAT 93
          E I NVPPFHCRR SSHCSVPFIAT
Sbjct: 61 E-ITNVPPFHCRRASSHCSVPFIAT 84

[Close]

BLAST of CsaV3_7G000150 vs. ExPASy TrEMBL
Match: A0A540N5I5 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_008086 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 7.2e-25
Identity = 61/90 (67.78%), Postives = 73/90 (81.11%), Query Frame = 0


Query: 4  KGNSMMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKRKKH 63
          +G +M AFDMG+LRT LPQKRGLSRYYSGK+RSF C+ADVRSVEDLKKP++PDAKKRKKH
Sbjct: 2  EGENMRAFDMGALRTGLPQKRGLSRYYSGKSRSFTCMADVRSVEDLKKPENPDAKKRKKH 61

Query: 64 SDIKEIIINV-PPFHCRRVSS--HCSVPFI 91
          S+ K   +   PP+ CRRVSS   C+ P +
Sbjct: 62 SERKNFPVPAYPPYPCRRVSSTTQCTAPCV 91

[Close]

BLAST of CsaV3_7G000150 vs. ExPASy TrEMBL
Match: M5VHW2 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G090300 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.6e-24
Identity = 62/91 (68.13%), Postives = 74/91 (81.32%), Query Frame = 0


Query: 4  KGNSMMAFDMGSLRTNLPQKR-GLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKRKK 63
          +G++M AFDMG+LRTNLPQKR GLSRYYSGK+RSF C+ DVRSVEDLKKP+HPDAKKRKK
Sbjct: 2  EGDNMRAFDMGTLRTNLPQKRSGLSRYYSGKSRSFTCMDDVRSVEDLKKPEHPDAKKRKK 61

Query: 64 HSDIKEI-IINVPPFHCRRVSS--HCSVPFI 91
          HS+ K   +   PP+ CRRVSS   C+ P +
Sbjct: 62 HSERKNFPVPTYPPYPCRRVSSTTQCAAPCV 92

[Close]

BLAST of CsaV3_7G000150 vs. ExPASy TrEMBL
Match: A0A061E0R1 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_006830 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 2.1e-24
Identity = 65/92 (70.65%), Postives = 75/92 (81.52%), Query Frame = 0


Query: 1  MEDKGNSMMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKR 60
          MED+     AFDMG+LR+NLPQKRGLSRYYSGKARSFACIADVR VEDLKK +HPDAKKR
Sbjct: 1  MEDQ-TEKRAFDMGALRSNLPQKRGLSRYYSGKARSFACIADVRCVEDLKKQEHPDAKKR 60

Query: 61 KKHSDIKEIIINVPPFHCRRVSS--HCSVPFI 91
          KK+S+ KE+ +   P+ CRRVSS  HC+ P I
Sbjct: 61 KKYSNKKEMQL-YTPYPCRRVSSCTHCAAPCI 90

[Close]

BLAST of CsaV3_7G000150 vs. TAIR 10
Match: AT5G56550.1 (oxidative stress 3 )

HSP 1 Score: 47.8 bits (112), Expect = 5.7e-06
Identity = 20/40 (50.00%), Postives = 31/40 (77.50%), Query Frame = 0


Query: 12  DMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKK 52
           D+  L ++LP KRGLS++Y GK++SF  + +V+S+EDL K
Sbjct: 77  DLSDLMSHLPIKRGLSKFYEGKSQSFTSLGNVKSLEDLMK 116

[Close]

BLAST of CsaV3_7G000150 vs. TAIR 10
Match: AT5G24890.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24550.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 47.4 bits (111), Expect = 7.4e-06
Identity = 21/49 (42.86%), Postives = 35/49 (71.43%), Query Frame = 0


Query: 13  MGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKRK 62
           M SL  +LP KRGLS +Y GK++SF  + ++ SV+++ K ++P  K+R+
Sbjct: 98  MSSLEDSLPSKRGLSNHYKGKSKSFGNLGEIGSVKEVAKQENPLNKRRR 146

[Close]

BLAST of CsaV3_7G000150 vs. TAIR 10
Match: AT3G03170.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G24890.1); Has 184 Blast hits to 184 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 184; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 46.2 bits (108), Expect = 1.7e-05
Identity = 24/60 (40.00%), Postives = 37/60 (61.67%), Query Frame = 0


Query: 23  KRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKRKKHSDIKEIIINVPPFHCRRVS 82
           +RGLS++Y GK++SF  +A+  +VEDL KP++P   K K+  +           HCRR+S
Sbjct: 56  RRGLSKHYKGKSQSFTTLAEALTVEDLAKPENPFNAKLKQRRESP---------HCRRLS 106

[Close]

BLAST of CsaV3_7G000150 vs. TAIR 10
Match: AT5G21940.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G43850.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 42.4 bits (98), Expect = 2.4e-04
Identity = 21/57 (36.84%), Postives = 37/57 (64.91%), Query Frame = 0


Query: 13  MGSLRTNLPQKRGLSRYYSGKARSF--------ACIADVRSVEDLKKPKHPDAKKRK 62
           M SL   LP ++G+S+YYSGK++SF        + +    S++DL KP++P +++R+
Sbjct: 78  MESLEQVLPVRKGISKYYSGKSKSFTNLTAEAASALTSSSSMKDLAKPENPYSRRRR 134

[Close]

BLAST of CsaV3_7G000150 vs. TAIR 10
Match: AT4G31510.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24550.1); Has 205 Blast hits to 205 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 3; Plants - 187; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 40.8 bits (94), Expect = 7.0e-04
Identity = 20/47 (42.55%), Postives = 30/47 (63.83%), Query Frame = 0


Query: 15  SLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKRK 62
           SL  +LP KRGLS +Y GK++SF  + +  +  DL K + P  K+R+
Sbjct: 75  SLEDSLPIKRGLSNHYIGKSKSFGNLMEASNTNDLVKVESPLNKRRR 121

The following BLAST results are available for this feature:

BLAST of CsaV3_7G000150 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN43154.1	5.8e-45	100.00	hypothetical protein Csa_020555 [Cucumis sativus]	[more]
KAA0033797.1	2.6e-37	95.29	hypothetical protein E6C27_scaffold142G00550 [Cucumis melo var. makuwa] >TYK2233...	[more]
KAG6588432.1	1.1e-30	77.42	hypothetical protein SDJN03_16997, partial [Cucurbita argyrosperma subsp. sorori...	[more]
TQE06317.1	1.5e-24	67.78	hypothetical protein C1H46_008086 [Malus baccata]	[more]
ONH91050.1	3.3e-24	68.13	hypothetical protein PRUPE_8G090300 [Prunus persica]	[more]

BLAST of CsaV3_7G000150 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G000150 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K2B1	2.8e-45	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G004070 PE=4 SV=1	[more]
A0A5A7SX13	1.3e-37	95.29	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A540N5I5	7.2e-25	67.78	Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_008086 PE=4 SV=1	[more]
M5VHW2	1.6e-24	68.13	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G090300 PE=4 SV=1	[more]
A0A061E0R1	2.1e-24	70.65	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_006830 PE=4 SV=1	[more]

BLAST of CsaV3_7G000150 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G56550.1	5.7e-06	50.00	oxidative stress 3	[more]
AT5G24890.1	7.4e-06	42.86	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G03170.1	1.7e-05	40.00	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G21940.1	2.4e-04	36.84	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G31510.1	7.0e-04	42.55	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33172:SF38	BNAA01G05330D PROTEIN	coord: 5..85
None	No IPR available	PANTHER	PTHR33172	OS08G0516900 PROTEIN	coord: 5..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G000150.1	CsaV3_7G000150.1	mRNA