CsaV3_7G000050 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_7G000050
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	protein RADIALIS-like 1
Location	chr7: 120080 .. 121362 (+)
RNA-Seq Expression	CsaV3_7G000050
Synteny	CsaV3_7G000050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCGATGTCTTCCCATGGATCTGGTACATGGACTGTAACGCAAAACAAGGCCTTTGAGAAGGCATTGGCAGTTTATGATCAAGACACACCTGATCGATGGCTAAATGTTGCAAAAGCTGTGGGTGGAAAAACTGCTGAAGAAGTCAAGAGGCATTATGCACTTCTTGTTGAGGATGTTAAGTTTATTGAGTCTGGCCAAGTTCCTTTCCCTTATCGAACCTCCGGAGGTGGTAACCAAGGTAATGTATAAGCTTTCGAGTTAATTGGTGGATTATTACATGGTATCAGAGTATCACAGTTCAGTTTGTTTCTAAAATGTCATTCTCTGTACATCTCGTTGGATCTTAATTCTAATATATTTTGAAGCCTACAAGTGAAACGAGAGTGTTAAGGTATTGATATATAGCTAAATTTAGTGTTAATGTATTGACATATATATTTTGAACTCAATTTTTGTTTTGAACTTAATACTTGTATACCTTTATACAGATAAACACACGAGAATCTACCTTAAAAACAATTGATTATAAGAGAGAAGTAATTCGTCTATTTTATATTATTCATTTTCTTAAAAATGGTATTATTTACGATATTCTCTTTATAATTAATATTATATTTTTTTAATCTCACCATTGTTAAGCTGATCTAAATACAACATTCGTTTCGATTTTCGTGTTTATACGTGATAATATGTAGTTAGGAATTTTTTTTCCAATATTTCCATCAATAAAAATTTTATCTATGAAAATCAAGTTTTTATATATTGATACATTTTCTGGTAGAAGTTTCTGTAACACATTATTTTATTTAGAGAGCACATAATATCTAAAAAAGTTGGATTAAATCATTATCTTTATAGTAATTAATACAGTGTAGTATTAATATAGAAGATCACCTTATATTTGAAACGTATATTTTTGTCTCTAATAACTAGTCATGTTTTCAACTGATCTAGTTGATTTCAAACGAGGTACCCTAATTATTTTTCATGGAAAAAGAAAAACAAACAAACCCTCCTCCCTAACCCATTGGGTTTTGAATGATGTCTTGGCTCTCTTGCAATGTTATGTCTTTATACAATTTGTATGTATATGAGCAGAGGAAATGTCAATATCAATGAATAGTAGCCCCCCATTTGGCATGGCTTCTTCTCTGAATTTATGGTTGCATGTCTCAATAAAAAATAAACAATATAATAACTCTTCATCTTGTAAGCTTTCTGAAAGGCCCCCTTCTCTGTTCTTGTTCTTGGAAACTAAAGCTGCACCAATCCCTTAG

mRNA sequence

ATGGCTTCGATGTCTTCCCATGGATCTGGTACATGGACTGTAACGCAAAACAAGGCCTTTGAGAAGGCATTGGCAGTTTATGATCAAGACACACCTGATCGATGGCTAAATGTTGCAAAAGCTGTGGGTGGAAAAACTGCTGAAGAAGTCAAGAGGCATTATGCACTTCTTGTTGAGGATGTTAAGTTTATTGAGTCTGGCCAAGTTCCTTTCCCTTATCGAACCTCCGGAGGTGGTAACCAAGAGGAAATGTCAATATCAATGAATAGTAGCCCCCCATTTGGCATGGCTTCTTCTCTGAATTTATGGTTGCATGTCTCAATAAAAAATAAACAATATAATAACTCTTCATCTTGTAAGCTTTCTGAAAGGCCCCCTTCTCTGTTCTTGTTCTTGGAAACTAAAGCTGCACCAATCCCTTAG

Coding sequence (CDS)

ATGGCTTCGATGTCTTCCCATGGATCTGGTACATGGACTGTAACGCAAAACAAGGCCTTTGAGAAGGCATTGGCAGTTTATGATCAAGACACACCTGATCGATGGCTAAATGTTGCAAAAGCTGTGGGTGGAAAAACTGCTGAAGAAGTCAAGAGGCATTATGCACTTCTTGTTGAGGATGTTAAGTTTATTGAGTCTGGCCAAGTTCCTTTCCCTTATCGAACCTCCGGAGGTGGTAACCAAGAGGAAATGTCAATATCAATGAATAGTAGCCCCCCATTTGGCATGGCTTCTTCTCTGAATTTATGGTTGCATGTCTCAATAAAAAATAAACAATATAATAACTCTTCATCTTGTAAGCTTTCTGAAAGGCCCCCTTCTCTGTTCTTGTTCTTGGAAACTAAAGCTGCACCAATCCCTTAG

Protein sequence

MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGGGNQEEMSISMNSSPPFGMASSLNLWLHVSIKNKQYNNSSSCKLSERPPSLFLFLETKAAPIP*

Homology

[Close]

BLAST of CsaV3_7G000050 vs. NCBI nr
Match: KAE8645641.1 (hypothetical protein Csa_020418 [Cucumis sativus])

HSP 1 Score: 285.4 bits (729), Expect = 2.6e-73
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
           MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED
Sbjct: 1   MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61  VKFIESGQVPFPYRTSGGGNQEEMSISMNSSPPFGMASSLNLWLHVSIKNKQYNNSSSCK 120
           VKFIESGQVPFPYRTSGGGNQEEMSISMNSSPPFGMASSLNLWLHVSIKNKQYNNSSSCK
Sbjct: 61  VKFIESGQVPFPYRTSGGGNQEEMSISMNSSPPFGMASSLNLWLHVSIKNKQYNNSSSCK 120

Query: 121 LSERPPSLFLFLETKAAPIP 141
           LSERPPSLFLFLETKAAPIP
Sbjct: 121 LSERPPSLFLFLETKAAPIP 140

[Close]

BLAST of CsaV3_7G000050 vs. NCBI nr
Match: XP_004151125.2 (protein RADIALIS-like 1 [Cucumis sativus])

HSP 1 Score: 168.7 bits (426), Expect = 3.6e-38
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED
Sbjct: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGQVPFPYRTSGGGNQ 82
          VKFIESGQVPFPYRTSGGGNQ
Sbjct: 61 VKFIESGQVPFPYRTSGGGNQ 81

[Close]

BLAST of CsaV3_7G000050 vs. NCBI nr
Match: KAA0036150.1 (protein RADIALIS-like 1 [Cucumis melo var. makuwa] >TYK01768.1 protein RADIALIS-like 1 [Cucumis melo var. makuwa])

HSP 1 Score: 163.7 bits (413), Expect = 1.2e-36
Identity = 79/81 (97.53%), Postives = 79/81 (97.53%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSSHGSGTWTV QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED
Sbjct: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGQVPFPYRTSGGGNQ 82
          VKFIESGQVPFPYRTSG GNQ
Sbjct: 61 VKFIESGQVPFPYRTSGDGNQ 81

[Close]

BLAST of CsaV3_7G000050 vs. NCBI nr
Match: XP_008447024.1 (PREDICTED: protein RADIALIS-like 1 [Cucumis melo])

HSP 1 Score: 163.7 bits (413), Expect = 1.2e-36
Identity = 79/81 (97.53%), Postives = 79/81 (97.53%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSSHGSGTWTV QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED
Sbjct: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGQVPFPYRTSGGGNQ 82
          VKFIESGQVPFPYRTSG GNQ
Sbjct: 61 VKFIESGQVPFPYRTSGDGNQ 81

[Close]

BLAST of CsaV3_7G000050 vs. NCBI nr
Match: XP_038888369.1 (protein RADIALIS-like 1 [Benincasa hispida])

HSP 1 Score: 154.5 bits (389), Expect = 7.0e-34
Identity = 74/80 (92.50%), Postives = 76/80 (95.00%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSSHGSG+WT  QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVK HYALLVED
Sbjct: 1  MASMSSHGSGSWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKMHYALLVED 60

Query: 61 VKFIESGQVPFPYRTSGGGN 81
          VKFIESGQVPFPYR+S GGN
Sbjct: 61 VKFIESGQVPFPYRSSRGGN 80

[Close]

BLAST of CsaV3_7G000050 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 5.1e-27
Identity = 59/85 (69.41%), Postives = 67/85 (78.82%), Query Frame = 0


Query: 2  ASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDV 61
          +SMSS  SG+WT  QNKAFE+ALA YDQDTP+RW NVAK VGGKT EEVKRHY LLV+D+
Sbjct: 4  SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

Query: 62 KFIESGQVPFP-YRTSGGGNQEEMS 86
            IE+G VPFP YRTSGG     +S
Sbjct: 64 NSIENGHVPFPNYRTSGGCTNGRLS 88

[Close]

BLAST of CsaV3_7G000050 vs. ExPASy Swiss-Prot
Match: Q9SIJ5 (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 4.3e-26
Identity = 57/79 (72.15%), Postives = 67/79 (84.81%), Query Frame = 0


Query: 3  SMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVK 62
          SMSS+GSG+WTV QNKAFE+ALAVYDQDTPDRW NVA+AVGGKT EE KR Y LLV D++
Sbjct: 5  SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

Query: 63 FIESGQVPFP-YRTSGGGN 81
           IE+G VPFP Y+T+ G +
Sbjct: 65 SIENGHVPFPDYKTTTGNS 83

[Close]

BLAST of CsaV3_7G000050 vs. ExPASy Swiss-Prot
Match: Q58FS3 (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.4e-24
Identity = 53/76 (69.74%), Postives = 66/76 (86.84%), Query Frame = 0


Query: 5  SSHGSG-TWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKF 64
          S+ GSG  W+  +NKAFE+ALAVYD+DTPDRW NVA+AV G+T EEVK+HY +LVED+K+
Sbjct: 3  STRGSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKY 62

Query: 65 IESGQVPFP-YRTSGG 79
          IESG+VPFP YRT+GG
Sbjct: 63 IESGKVPFPNYRTTGG 78

[Close]

BLAST of CsaV3_7G000050 vs. ExPASy Swiss-Prot
Match: Q6NNN0 (Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.9e-22
Identity = 51/80 (63.75%), Postives = 59/80 (73.75%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MAS S   S +WT  +NK FE+ALA YDQDTPDRW NVA+AVGGK+AEEV+RHY LL+ D
Sbjct: 1  MASNSMSSSASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELLIRD 60

Query: 61 VKFIESGQVPFPYRTSGGGN 81
          V  IESG+ P P   S G N
Sbjct: 61 VNDIESGRYPHPNYRSNGNN 80

[Close]

BLAST of CsaV3_7G000050 vs. ExPASy Swiss-Prot
Match: Q1A173 (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 6.4e-22
Identity = 52/76 (68.42%), Postives = 60/76 (78.95%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MAS S      WT +QNK FE+ALAVYD+DTPDRW NVAKAVGGKT EEVKRHY +LVED
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VKFIESGQVPFP-YRT 76
          +  IE+G+VP P Y+T
Sbjct: 61 LINIETGRVPLPNYKT 76

[Close]

BLAST of CsaV3_7G000050 vs. ExPASy TrEMBL
Match: A0A0A0K348 (SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G170600 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.7e-38
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED
Sbjct: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGQVPFPYRTSGGGNQ 82
          VKFIESGQVPFPYRTSGGGNQ
Sbjct: 61 VKFIESGQVPFPYRTSGGGNQ 81

[Close]

BLAST of CsaV3_7G000050 vs. ExPASy TrEMBL
Match: A0A5A7SYK4 (Protein RADIALIS-like 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1323G00110 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 5.6e-37
Identity = 79/81 (97.53%), Postives = 79/81 (97.53%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSSHGSGTWTV QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED
Sbjct: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGQVPFPYRTSGGGNQ 82
          VKFIESGQVPFPYRTSG GNQ
Sbjct: 61 VKFIESGQVPFPYRTSGDGNQ 81

[Close]

BLAST of CsaV3_7G000050 vs. ExPASy TrEMBL
Match: A0A1S3BFW6 (protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489573 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 5.6e-37
Identity = 79/81 (97.53%), Postives = 79/81 (97.53%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSSHGSGTWTV QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED
Sbjct: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGQVPFPYRTSGGGNQ 82
          VKFIESGQVPFPYRTSG GNQ
Sbjct: 61 VKFIESGQVPFPYRTSGDGNQ 81

[Close]

BLAST of CsaV3_7G000050 vs. ExPASy TrEMBL
Match: A0A6J1C385 (protein RADIALIS-like 1 OS=Momordica charantia OX=3673 GN=LOC111007847 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 2.2e-33
Identity = 73/85 (85.88%), Postives = 76/85 (89.41%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSSHGS  WT  QNKAFEKALAVYDQDTP+RWLNVAKAVGGKTAEEVKRHY LLVED
Sbjct: 1  MASMSSHGSSAWTAKQNKAFEKALAVYDQDTPERWLNVAKAVGGKTAEEVKRHYELLVED 60

Query: 61 VKFIESGQVPFPYRTSGGGNQEEMS 86
          VKFIESGQV FPYRTSGGG+   M+
Sbjct: 61 VKFIESGQVSFPYRTSGGGSHGNMT 85

[Close]

BLAST of CsaV3_7G000050 vs. ExPASy TrEMBL
Match: A0A6J1GJE9 (protein RADIALIS-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111454834 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 2.2e-33
Identity = 75/82 (91.46%), Postives = 77/82 (93.90%), Query Frame = 0


Query: 1  MASMSSHGS-GTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVE 60
          MASMSSHGS GTWTV QNKAFE+ALAVYDQDTPDRWLNVAKAV GKT EEV+RHYALLVE
Sbjct: 1  MASMSSHGSAGTWTVKQNKAFEQALAVYDQDTPDRWLNVAKAVPGKTVEEVERHYALLVE 60

Query: 61 DVKFIESGQVPFPYRTSGGGNQ 82
          DVKFIESGQVPFPYRTSGGG Q
Sbjct: 61 DVKFIESGQVPFPYRTSGGGTQ 82

[Close]

BLAST of CsaV3_7G000050 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 )

HSP 1 Score: 122.1 bits (305), Expect = 3.6e-28
Identity = 59/85 (69.41%), Postives = 67/85 (78.82%), Query Frame = 0


Query: 2  ASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDV 61
          +SMSS  SG+WT  QNKAFE+ALA YDQDTP+RW NVAK VGGKT EEVKRHY LLV+D+
Sbjct: 4  SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

Query: 62 KFIESGQVPFP-YRTSGGGNQEEMS 86
            IE+G VPFP YRTSGG     +S
Sbjct: 64 NSIENGHVPFPNYRTSGGCTNGRLS 88

[Close]

BLAST of CsaV3_7G000050 vs. TAIR 10
Match: AT2G21650.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 119.0 bits (297), Expect = 3.0e-27
Identity = 57/79 (72.15%), Postives = 67/79 (84.81%), Query Frame = 0


Query: 3  SMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVK 62
          SMSS+GSG+WTV QNKAFE+ALAVYDQDTPDRW NVA+AVGGKT EE KR Y LLV D++
Sbjct: 5  SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

Query: 63 FIESGQVPFP-YRTSGGGN 81
           IE+G VPFP Y+T+ G +
Sbjct: 65 SIENGHVPFPDYKTTTGNS 83

[Close]

BLAST of CsaV3_7G000050 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 105.1 bits (261), Expect = 4.6e-23
Identity = 52/76 (68.42%), Postives = 60/76 (78.95%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MAS S      WT +QNK FE+ALAVYD+DTPDRW NVAKAVGGKT EEVKRHY +LVED
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VKFIESGQVPFP-YRT 76
          +  IE+G+VP P Y+T
Sbjct: 61 LINIETGRVPLPNYKT 76

[Close]

BLAST of CsaV3_7G000050 vs. TAIR 10
Match: AT1G75250.2 (RAD-like 6 )

HSP 1 Score: 105.1 bits (261), Expect = 4.6e-23
Identity = 52/76 (68.42%), Postives = 60/76 (78.95%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MAS S      WT +QNK FE+ALAVYD+DTPDRW NVAKAVGGKT EEVKRHY +LVED
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VKFIESGQVPFP-YRT 76
          +  IE+G+VP P Y+T
Sbjct: 61 LINIETGRVPLPNYKT 76

[Close]

BLAST of CsaV3_7G000050 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 )

HSP 1 Score: 102.4 bits (254), Expect = 3.0e-22
Identity = 52/82 (63.41%), Postives = 61/82 (74.39%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MAS S   S +WT  QNK FE+ALAVYD+DTPDRW NVAKAVG K+AEEVKRHY +LVED
Sbjct: 1  MASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVED 60

Query: 61 VKFIESGQVPFP-YRTSGGGNQ 82
          +  IE   VP P Y+T   G++
Sbjct: 61 LMNIEQDLVPLPKYKTVDVGSK 82

The following BLAST results are available for this feature:

BLAST of CsaV3_7G000050 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8645641.1	2.6e-73	100.00	hypothetical protein Csa_020418 [Cucumis sativus]	[more]
XP_004151125.2	3.6e-38	100.00	protein RADIALIS-like 1 [Cucumis sativus]	[more]
KAA0036150.1	1.2e-36	97.53	protein RADIALIS-like 1 [Cucumis melo var. makuwa] >TYK01768.1 protein RADIALIS-...	[more]
XP_008447024.1	1.2e-36	97.53	PREDICTED: protein RADIALIS-like 1 [Cucumis melo]	[more]
XP_038888369.1	7.0e-34	92.50	protein RADIALIS-like 1 [Benincasa hispida]	[more]

BLAST of CsaV3_7G000050 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JVB8	5.1e-27	69.41	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
Q9SIJ5	4.3e-26	72.15	Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1	[more]
Q58FS3	2.4e-24	69.74	Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1	[more]
Q6NNN0	2.9e-22	63.75	Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1	[more]
Q1A173	6.4e-22	68.42	Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1	[more]

BLAST of CsaV3_7G000050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K348	1.7e-38	100.00	SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G170600 PE=4 S...	[more]
A0A5A7SYK4	5.6e-37	97.53	Protein RADIALIS-like 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BFW6	5.6e-37	97.53	protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489573 PE=4 SV=1	[more]
A0A6J1C385	2.2e-33	85.88	protein RADIALIS-like 1 OS=Momordica charantia OX=3673 GN=LOC111007847 PE=4 SV=1	[more]
A0A6J1GJE9	2.2e-33	91.46	protein RADIALIS-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111454834 PE=4 SV=1	[more]

BLAST of CsaV3_7G000050 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G39250.1	3.6e-28	69.41	RAD-like 1	[more]
AT2G21650.1	3.0e-27	72.15	Homeodomain-like superfamily protein	[more]
AT1G75250.1	4.6e-23	68.42	RAD-like 6	[more]
AT1G75250.2	4.6e-23	68.42	RAD-like 6	[more]
AT1G19510.1	3.0e-22	63.41	RAD-like 5	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 8..60 e-value: 9.7E-7 score: 38.4
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 11..54 e-value: 3.09944E-6 score: 39.8662
None	No IPR available	GENE3D	1.10.10.60		coord: 3..71 e-value: 3.6E-22 score: 79.9
None	No IPR available	PANTHER	PTHR43952:SF53	TRANSCRIPTION FACTOR MYB/SANT FAMILY-RELATED	coord: 1..86
IPR044636	Transcription factor RADIALIS-like	PANTHER	PTHR43952	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 1..86
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 10..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G000050.1	CsaV3_7G000050.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003700	DNA-binding transcription factor activity