CsaV3_6G053010 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G053010
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	cytochrome c6, chloroplastic
Location	chr6: 30954072 .. 30956502 (-)
RNA-Seq Expression	CsaV3_6G053010
Synteny	CsaV3_6G053010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGAGATGCACCTTCTCTCCGTAACTTCACATTTTGTTGCCCCTAACACTAGCCCTTATTGCTTCCCAGTAAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTTTTTATCTCTATGTATTTCTCCCCGCTGCAAACTGAGATTTCCAACCCAACCACAGGGAAAGCGACGGACCCCAGTTTGTCAAATTCGTACACAAGTTAAGATTCTTAAAGCCTTGGTTCCCCCTCTGATTGCGCTGCTTCTACCATTATCTCCCCTCAACAAAACCTCAGGTCCACTCATACCTAGTCCATAACTCATTATTTCTTAACCGCTCTTAACCTACGTTGTCGAACTAACCTATTACACAAATCTATTCTTATTTTTTACTCAAGCGGTATCATCATATTCTTCCAACTCACTGGATTTTCTCAAATTCTAACTACCCTCAGTCTTCGAATTTTTGTCATCTTTTTCGTCATACAGATGCATGCTCGTGAATTCTGGATAGTCGATTCGTGGATTTACAATTGGAAGCCTAAATACTGTTCTTGGTGTTCCTAAAATATGAAATGATTTCTACTCGTTCTTTTGTGTACTGTCAAAGTTATGCATACCCCATTAAGCAAAAATTACTCTACATTACTTGTTTAATTAGGATACAAATGCATGTTAATACAAATTTCCGTTCAGTAAATTTTGCATTCGCTTATTTTTCCTCCATTTTTAAGAAACGAGTTCCATAAACCTCCCTAAACAATAACGTTTCCATAATTGATTTTTTATTTCTTACCCCTGACTTCACAAGCAAATGTTTCTATTTGATAGTTAAAAGACAGATTGAGGTATCAGAAACGCCATAAGACCGACCCTCAAATGACTCTGCTTTCTCTTTACGGGAATCAAAGATACAACTGTTTGTACTATTTCCTGACTTGATGTCGTCCGTGTAATTTGTGTAACAGGATGTCTTGTGCTCGCCGAAACGATAGAAATAGAAAGAGGAGGTGCATTGTTTAATCAATCTTGCATTGGCTGCCATGACGGAGGGGGAAACATAATTCAGCCCGTTATTGCTACTATCTCTCCTTACACTACTCTTTAATTTGGATAAGCATCTTAGTACTTAGTTCATGCTAATATTAGCATGCTTTTCTGACTGTTTGAATTAGAATCGTACTCTGTTTGTTTGTTTTGCACTACCAACATCAGTGTCTTCCCTGGAATCTGTTTTATTTGTTTGATTCTGAATTTTTATTGATCATTCTATGATCTTGCATTTATCTTCCAAATGTTGAACTTGAAGTGTGATGGTTTCGGTTTTTTCTTTTTTCCTTTTTGCTGTTCTTTCTGTGGAACATTTCTGCTACTTCTGTAACTGACTTTTTGTTTTCCTCTTTCCTAGGGTGCCACACTCTTTTCAAGTGATCTTGAAAGGTAATCTTCTAGAACTTGAGAAAACAATAAGGTTATTTATCAGTATATGATCTCAGTCCAATGTGCGTACATCACTGTCTACTAGTATCATGAGGTATTAGAACACAGATCTACTCTCTCTTCTAGATCTATGATCAATTTTTTTAAAAAATTGTTTACTTTTTTTTATTGTTCAAGTGTGGCCATAGTCATATATTGATTAGATTGTAGATGAAGAAAGATTGTAGATTCATTGGTAAGGGTAATAGCTCTATCTATTGTTATATAGACATTTTGGTAGGGCCCAAAAATCTACATGGTCTTAACCCAAAAATGGGGTAAATCAAGCAAATATGCTTAAGAACTGATTTTCTTTCACCTAAAACACTTCACAATCACCTAAAATTTGTTGTGCCCAAACACCGGCACTTCGCCAATTTAGAAATGTCGTTAATTTATAATGCACGCCTTTAACAATTTTATTAGGAAAAAAAAATCACCACAGTTTTATGGAGAGTCCAGATCAAATAACAGAGCTTTCAGAATTTCTCTGTATCCAGCCTAGCCATATGCTGAAATATGTTTTACACGTGTTTGTGAGGTGATTGAACAAAACTGAACGTTAATGAATGATTGTTTGTTGTCTTAGTTCTAGAGTTTAAAAGCCATCTTCTATTAATTAAAGACGAAGAAAAAGCATGAGAGAACTCTATAAAATTTTCAAAATTTTGGTTAATTGTTCTTTCGTATAGAAATGGAGCTGATGCCGAAGAGGAGATCTACCGTATAACATATGATGGGAAAGGGAGAATGCCTGTAAGTGATAATTTGATAATCTTATTCTATAAGCGTGGAAATATTTATATAAATATATCAACACGATGGGTTTCAGGGTTTTGGTGAGAACTGTAAACCAAGGGGTCAGTGCACATTTGGTCCACGTTTGCAGGAGGAAGAAATTAGGCTTTTGGCGAAGTTTGTAAAGATACAGGCAGATCGGGGGTGGCCAAACCCATAG

mRNA sequence

ATGAAGGAGATGCACCTTCTCTCCGTAACTTCACATTTTGTTGCCCCTAACACTAGCCCTTATTGCTTCCCAGGAAAGCGACGGACCCCAGTTTGTCAAATTCGTACACAAGTTAAGATTCTTAAAGCCTTGGTTCCCCCTCTGATTGCGCTGCTTCTACCATTATCTCCCCTCAACAAAACCTCAGGATGTCTTGTGCTCGCCGAAACGATAGAAATAGAAAGAGGAGGTGCATTGTTTAATCAATCTTGCATTGGCTGCCATGACGGAGGGGGAAACATAATTCAGCCCGGTGCCACACTCTTTTCAAGTGATCTTGAAAGAAATGGAGCTGATGCCGAAGAGGAGATCTACCGTATAACATATGATGGGAAAGGGAGAATGCCTGGTTTTGGTGAGAACTGTAAACCAAGGGGTCAGTGCACATTTGGTCCACGTTTGCAGGAGGAAGAAATTAGGCTTTTGGCGAAGTTTGTAAAGATACAGGCAGATCGGGGGTGGCCAAACCCATAG

Coding sequence (CDS)

ATGAAGGAGATGCACCTTCTCTCCGTAACTTCACATTTTGTTGCCCCTAACACTAGCCCTTATTGCTTCCCAGGAAAGCGACGGACCCCAGTTTGTCAAATTCGTACACAAGTTAAGATTCTTAAAGCCTTGGTTCCCCCTCTGATTGCGCTGCTTCTACCATTATCTCCCCTCAACAAAACCTCAGGATGTCTTGTGCTCGCCGAAACGATAGAAATAGAAAGAGGAGGTGCATTGTTTAATCAATCTTGCATTGGCTGCCATGACGGAGGGGGAAACATAATTCAGCCCGGTGCCACACTCTTTTCAAGTGATCTTGAAAGAAATGGAGCTGATGCCGAAGAGGAGATCTACCGTATAACATATGATGGGAAAGGGAGAATGCCTGGTTTTGGTGAGAACTGTAAACCAAGGGGTCAGTGCACATTTGGTCCACGTTTGCAGGAGGAAGAAATTAGGCTTTTGGCGAAGTTTGTAAAGATACAGGCAGATCGGGGGTGGCCAAACCCATAG

Protein sequence

MKEMHLLSVTSHFVAPNTSPYCFPGKRRTPVCQIRTQVKILKALVPPLIALLLPLSPLNKTSGCLVLAETIEIERGGALFNQSCIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRITYDGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP*

Homology

[Close]

BLAST of CsaV3_6G053010 vs. NCBI nr
Match: XP_004134523.1 (cytochrome c6, chloroplastic [Cucumis sativus] >KAE8647784.1 hypothetical protein Csa_003678 [Cucumis sativus])

HSP 1 Score: 357.5 bits (916), Expect = 6.6e-95
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0


Query: 1   MKEMHLLSVTSHFVAPNTSPYCFPGKRRTPVCQIRTQVKILKALVPPLIALLLPLSPLNK 60
           MKEMHLLSVTSHFVAPNTSPYCFPGKRRTPVCQIRTQVKILKALVPPLIALLLPLSPLNK
Sbjct: 1   MKEMHLLSVTSHFVAPNTSPYCFPGKRRTPVCQIRTQVKILKALVPPLIALLLPLSPLNK 60

Query: 61  TSGCLVLAETIEIERGGALFNQSCIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRI 120
           TSGCLVLAETIEIERGGALFNQSCIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRI
Sbjct: 61  TSGCLVLAETIEIERGGALFNQSCIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRI 120

Query: 121 TYDGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP 171
           TYDGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP
Sbjct: 121 TYDGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP 170

[Close]

BLAST of CsaV3_6G053010 vs. NCBI nr
Match: XP_008439440.1 (PREDICTED: cytochrome c6, chloroplastic [Cucumis melo] >XP_008439441.1 PREDICTED: cytochrome c6, chloroplastic [Cucumis melo])

HSP 1 Score: 306.6 bits (784), Expect = 1.3e-79
Identity = 150/169 (88.76%), Postives = 154/169 (91.12%), Query Frame = 0


Query: 4   MHLLSVTSHFVAPNTSPYCFP--GKRRTPVCQIRTQVKILKALVPPLIALLLPLSPLNKT 63
           M LLSVTS FV P +SP+ FP  G RRT VCQIRT VKIL+ L PPLIALLLPLSPLNKT
Sbjct: 1   MQLLSVTSDFVGPISSPHSFPLNGNRRTIVCQIRTHVKILQTLAPPLIALLLPLSPLNKT 60

Query: 64  SGCLVLAETIEIERGGALFNQSCIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRIT 123
            GCLVLAET EIERGGALFNQ+CIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRIT
Sbjct: 61  PGCLVLAETTEIERGGALFNQACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRIT 120

Query: 124 YDGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP 171
           Y GKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP
Sbjct: 121 YYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP 169

[Close]

BLAST of CsaV3_6G053010 vs. NCBI nr
Match: XP_038877732.1 (cytochrome c6, chloroplastic [Benincasa hispida])

HSP 1 Score: 292.7 bits (748), Expect = 2.0e-75
Identity = 142/169 (84.02%), Postives = 151/169 (89.35%), Query Frame = 0


Query: 4   MHLLSVTSHFVAPNTSPYCFP--GKRRTPVCQIRTQVKILKALVPPLIALLLPLSPLNKT 63
           MHLLS TS+F     +P+CFP   KRRT VCQIRTQVKIL +L PPLIA+ L LSPLN+T
Sbjct: 1   MHLLSATSNFC---PTPHCFPLKEKRRTVVCQIRTQVKILNSLAPPLIAVFLALSPLNQT 60

Query: 64  SGCLVLAETIEIERGGALFNQSCIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRIT 123
            GCL LA+T EIERGGALFNQ+CIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRIT
Sbjct: 61  PGCLALAQTAEIERGGALFNQACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRIT 120

Query: 124 YDGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP 171
           Y GKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVK+QADRGWPNP
Sbjct: 121 YYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKVQADRGWPNP 166

[Close]

BLAST of CsaV3_6G053010 vs. NCBI nr
Match: XP_022926876.1 (cytochrome c6, chloroplastic [Cucurbita moschata])

HSP 1 Score: 275.4 bits (703), Expect = 3.3e-70
Identity = 134/169 (79.29%), Postives = 146/169 (86.39%), Query Frame = 0


Query: 4   MHLLSVTSHFVAPNTSPYCFPGK--RRTPVCQIRTQVKILKALVPPLIALLLPLSPLNKT 63
           M  LSVTS F   + SP+CFP K  RRT VCQ+R QVKILK L PPLIA+L+ L PLNKT
Sbjct: 1   MRFLSVTSDF---SLSPHCFPLKVQRRTAVCQMRRQVKILKTLAPPLIAVLIALYPLNKT 60

Query: 64  SGCLVLAETIEIERGGALFNQSCIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRIT 123
            GC  LA++ EIERGGALF+ +CIGCHD GGNIIQPGATLFSSDLERNGAD+EEEIY+IT
Sbjct: 61  PGCYALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNGADSEEEIYQIT 120

Query: 124 YDGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP 171
           Y GKGRMPGFGENCKPRGQCTFGPRLQEEEIR+LAKFVKIQADRGWPNP
Sbjct: 121 YYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGWPNP 166

[Close]

BLAST of CsaV3_6G053010 vs. NCBI nr
Match: XP_023517564.1 (cytochrome c6, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 273.1 bits (697), Expect = 1.6e-69
Identity = 133/169 (78.70%), Postives = 145/169 (85.80%), Query Frame = 0


Query: 4   MHLLSVTSHFVAPNTSPYCFPGK--RRTPVCQIRTQVKILKALVPPLIALLLPLSPLNKT 63
           M  LSVTS F   + SP+CFP K  RRT VCQ+R QV ILK L PPLIA+L+ L PLNKT
Sbjct: 1   MRFLSVTSDF---SLSPHCFPLKVQRRTAVCQMRRQVTILKTLAPPLIAVLIALYPLNKT 60

Query: 64  SGCLVLAETIEIERGGALFNQSCIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRIT 123
            GC  LA++ EIERGGALF+ +CIGCHD GGNIIQPGATLFSSDLERNGAD+EEEIY+IT
Sbjct: 61  PGCYALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNGADSEEEIYQIT 120

Query: 124 YDGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP 171
           Y GKGRMPGFGENCKPRGQCTFGPRLQEEEIR+LAKFVKIQADRGWPNP
Sbjct: 121 YYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGWPNP 166

[Close]

BLAST of CsaV3_6G053010 vs. ExPASy Swiss-Prot
Match: Q93VA3 (Cytochrome c6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PETJ PE=1 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 1.3e-48
Identity = 91/132 (68.94%), Postives = 107/132 (81.06%), Query Frame = 0


Query: 40  ILKALVPPLIALLLPLSPLNKTSGCL---VLAETIEIERGGALFNQSCIGCHDGGGNIIQ 99
           +LK L PPL A+LL +SP+     C     L +T++I+RG  LFN++CIGCHD GGNIIQ
Sbjct: 44  LLKKLAPPLTAVLLAVSPI-----CFPPESLGQTLDIQRGATLFNRACIGCHDTGGNIIQ 103

Query: 100 PGATLFSSDLERNGADAEEEIYRITYDGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLA 159
           PGATLF+ DLERNG D EEEIYR+TY GKGRMPGFGE C PRGQCTFGPRLQ+EEI+LLA
Sbjct: 104 PGATLFTKDLERNGVDTEEEIYRVTYFGKGRMPGFGEKCTPRGQCTFGPRLQDEEIKLLA 163

Query: 160 KFVKIQADRGWP 169
           +FVK QAD+GWP
Sbjct: 164 EFVKFQADQGWP 170

[Close]

BLAST of CsaV3_6G053010 vs. ExPASy Swiss-Prot
Match: P25935 (Cytochrome c6 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=petJ PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.1e-10
Identity = 38/129 (29.46%), Postives = 64/129 (49.61%), Query Frame = 0


Query: 39  KILKALVPPLIALLLPLSPLNKTSGCLVLAETIEIERGGALFNQSCIGCHDGGGNIIQPG 98
           +IL   +  L+ LL  ++P          A+  ++  GG +F+ +C  CH GG N++ P 
Sbjct: 3   RILGTAIAALVVLLAFIAP----------AQAADLAHGGQVFSANCAACHLGGRNVVNPA 62

Query: 99  ATLFSSDLERNGADAEEEIYRITYDGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKF 158
            TL  +DL++ G  + E I     +GKG MP FG             +L  ++I  +A +
Sbjct: 63  KTLQKADLDQYGMASIEAITTQVTNGKGAMPAFGS------------KLSADDIADVASY 109

Query: 159 VKIQADRGW 168
           V  Q+++GW
Sbjct: 123 VLDQSEKGW 109

[Close]

BLAST of CsaV3_6G053010 vs. ExPASy Swiss-Prot
Match: P07497 (Cytochrome c6 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=petJ PE=1 SV=2)

HSP 1 Score: 68.2 bits (165), Expect = 1.1e-10
Identity = 38/129 (29.46%), Postives = 64/129 (49.61%), Query Frame = 0


Query: 39  KILKALVPPLIALLLPLSPLNKTSGCLVLAETIEIERGGALFNQSCIGCHDGGGNIIQPG 98
           +IL   +  L+ LL  ++P          A+  ++  GG +F+ +C  CH GG N++ P 
Sbjct: 3   RILGTAIAALVVLLAFIAP----------AQAADLAHGGQVFSANCAACHLGGRNVVNPA 62

Query: 99  ATLFSSDLERNGADAEEEIYRITYDGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKF 158
            TL  +DL++ G  + E I     +GKG MP FG             +L  ++I  +A +
Sbjct: 63  KTLQKADLDQYGMASIEAITTQVTNGKGAMPAFGS------------KLSADDIADVASY 109

Query: 159 VKIQADRGW 168
           V  Q+++GW
Sbjct: 123 VLDQSEKGW 109

[Close]

BLAST of CsaV3_6G053010 vs. ExPASy Swiss-Prot
Match: P00110 (Cytochrome c6 OS=Bumilleriopsis filiformis OX=2835 GN=petJ PE=1 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.8e-10
Identity = 36/97 (37.11%), Postives = 51/97 (52.58%), Query Frame = 0


Query: 72  EIERGGALFNQSCIGCHDGGGNIIQPGATLFSSDLERNGADAEEEI-YRITYDGKGRMPG 131
           +IE G  +F  +C  CH GG N+I P  TL    LE NG +A   I Y++T +GK  MP 
Sbjct: 2   DIENGERIFTANCAACHAGGNNVIMPEKTLKKDALEANGMNAVSAITYQVT-NGKNAMP- 61

Query: 132 FGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGW 168
                       FG RL + +I  +A +V  Q+++GW
Sbjct: 62  -----------AFGGRLSDSDIEDVANYVLSQSEQGW 85

[Close]

BLAST of CsaV3_6G053010 vs. ExPASy Swiss-Prot
Match: P46445 (Cytochrome c6 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=petJ PE=1 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.0e-09
Identity = 33/96 (34.38%), Postives = 51/96 (53.12%), Query Frame = 0


Query: 72  EIERGGALFNQSCIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRITYDGKGRMPGF 131
           ++  G A+F  +C  CH+GG N I P  TL  +DLE NG ++   I     +G G MPGF
Sbjct: 37  DLAHGKAIFAGNCAACHNGGLNAINPSKTLKMADLEANGKNSVAAIVAQITNGNGAMPGF 96

Query: 132 GENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGW 168
                 +G      R+ + ++  +A +V  QA++GW
Sbjct: 97  ------KG------RISDSDMEDVAAYVLDQAEKGW 120

[Close]

BLAST of CsaV3_6G053010 vs. ExPASy TrEMBL
Match: A0A0A0KPD1 (Cytochrome c domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G538600 PE=3 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 3.4e-81
Identity = 154/170 (90.59%), Postives = 154/170 (90.59%), Query Frame = 0


Query: 1   MKEMHLLSVTSHFVAPNTSPYCFPGKRRTPVCQIRTQVKILKALVPPLIALLLPLSPLNK 60
           MKEMHLLS                GKRRTPVCQIRTQVKILKALVPPLIALLLPLSPLNK
Sbjct: 1   MKEMHLLS----------------GKRRTPVCQIRTQVKILKALVPPLIALLLPLSPLNK 60

Query: 61  TSGCLVLAETIEIERGGALFNQSCIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRI 120
           TSGCLVLAETIEIERGGALFNQSCIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRI
Sbjct: 61  TSGCLVLAETIEIERGGALFNQSCIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRI 120

Query: 121 TYDGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP 171
           TYDGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP
Sbjct: 121 TYDGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP 154

[Close]

BLAST of CsaV3_6G053010 vs. ExPASy TrEMBL
Match: A0A1S3AYD3 (cytochrome c6, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103484246 PE=3 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 6.5e-80
Identity = 150/169 (88.76%), Postives = 154/169 (91.12%), Query Frame = 0


Query: 4   MHLLSVTSHFVAPNTSPYCFP--GKRRTPVCQIRTQVKILKALVPPLIALLLPLSPLNKT 63
           M LLSVTS FV P +SP+ FP  G RRT VCQIRT VKIL+ L PPLIALLLPLSPLNKT
Sbjct: 1   MQLLSVTSDFVGPISSPHSFPLNGNRRTIVCQIRTHVKILQTLAPPLIALLLPLSPLNKT 60

Query: 64  SGCLVLAETIEIERGGALFNQSCIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRIT 123
            GCLVLAET EIERGGALFNQ+CIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRIT
Sbjct: 61  PGCLVLAETTEIERGGALFNQACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRIT 120

Query: 124 YDGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP 171
           Y GKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP
Sbjct: 121 YYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP 169

[Close]

BLAST of CsaV3_6G053010 vs. ExPASy TrEMBL
Match: A0A6J1EG38 (cytochrome c6, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111433859 PE=3 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 1.6e-70
Identity = 134/169 (79.29%), Postives = 146/169 (86.39%), Query Frame = 0


Query: 4   MHLLSVTSHFVAPNTSPYCFPGK--RRTPVCQIRTQVKILKALVPPLIALLLPLSPLNKT 63
           M  LSVTS F   + SP+CFP K  RRT VCQ+R QVKILK L PPLIA+L+ L PLNKT
Sbjct: 1   MRFLSVTSDF---SLSPHCFPLKVQRRTAVCQMRRQVKILKTLAPPLIAVLIALYPLNKT 60

Query: 64  SGCLVLAETIEIERGGALFNQSCIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRIT 123
            GC  LA++ EIERGGALF+ +CIGCHD GGNIIQPGATLFSSDLERNGAD+EEEIY+IT
Sbjct: 61  PGCYALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNGADSEEEIYQIT 120

Query: 124 YDGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP 171
           Y GKGRMPGFGENCKPRGQCTFGPRLQEEEIR+LAKFVKIQADRGWPNP
Sbjct: 121 YYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGWPNP 166

[Close]

BLAST of CsaV3_6G053010 vs. ExPASy TrEMBL
Match: A0A6J1KPJ4 (cytochrome c6, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111497114 PE=3 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 1.4e-69
Identity = 133/169 (78.70%), Postives = 146/169 (86.39%), Query Frame = 0


Query: 4   MHLLSVTSHFVAPNTSPYCFPGK--RRTPVCQIRTQVKILKALVPPLIALLLPLSPLNKT 63
           M LLSV S F   + SP+CF  K  RRT VC++R QVK LKAL PPLIA+L+ L PLNKT
Sbjct: 1   MRLLSVISDF---SLSPHCFTLKVQRRTTVCRMRRQVKFLKALAPPLIAVLIALYPLNKT 60

Query: 64  SGCLVLAETIEIERGGALFNQSCIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRIT 123
            GC  LA++ EIERGGALF+ +CIGCHDGGGNIIQPGATLFSSDLERNGAD+EEEIY+IT
Sbjct: 61  PGCYALAQSAEIERGGALFSHACIGCHDGGGNIIQPGATLFSSDLERNGADSEEEIYQIT 120

Query: 124 YDGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP 171
           Y GKGRMPGFGENCKPRGQCTFGPRLQEEEIR+LAKFVKIQADRGWPNP
Sbjct: 121 YYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGWPNP 166

[Close]

BLAST of CsaV3_6G053010 vs. ExPASy TrEMBL
Match: A0A6J1CXZ2 (cytochrome c6, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111015832 PE=3 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 5.9e-65
Identity = 129/170 (75.88%), Postives = 142/170 (83.53%), Query Frame = 0


Query: 4   MHLLSVTSHFVAPNTSPYCF--PGKRRTPVCQIR-TQVKILKALVPPLIALLLPLSPLNK 63
           MHLLS  S F   + + +CF   G+R T VCQ R  Q+KI K+  PPLIA+L+ LSP+ K
Sbjct: 1   MHLLSAISDF---SIASHCFSIKGERSTAVCQKRGQQLKIPKSFAPPLIAVLIALSPITK 60

Query: 64  TSGCLVLAETIEIERGGALFNQSCIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRI 123
           T GC  LA+T+EIERGGALF+QSCIGCHDGGGNIIQPGATLFSSDLERNGAD EEEIY I
Sbjct: 61  TPGC--LAQTVEIERGGALFSQSCIGCHDGGGNIIQPGATLFSSDLERNGADEEEEIYHI 120

Query: 124 TYDGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP 171
           TY GKGRMPGFGENCKPRGQCTFGPRLQE+EIRLLAKFVKIQADRGW NP
Sbjct: 121 TYYGKGRMPGFGENCKPRGQCTFGPRLQEDEIRLLAKFVKIQADRGWSNP 165

[Close]

BLAST of CsaV3_6G053010 vs. TAIR 10
Match: AT5G45040.1 (Cytochrome c )

HSP 1 Score: 194.1 bits (492), Expect = 9.0e-50
Identity = 91/132 (68.94%), Postives = 107/132 (81.06%), Query Frame = 0


Query: 40  ILKALVPPLIALLLPLSPLNKTSGCL---VLAETIEIERGGALFNQSCIGCHDGGGNIIQ 99
           +LK L PPL A+LL +SP+     C     L +T++I+RG  LFN++CIGCHD GGNIIQ
Sbjct: 44  LLKKLAPPLTAVLLAVSPI-----CFPPESLGQTLDIQRGATLFNRACIGCHDTGGNIIQ 103

Query: 100 PGATLFSSDLERNGADAEEEIYRITYDGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLA 159
           PGATLF+ DLERNG D EEEIYR+TY GKGRMPGFGE C PRGQCTFGPRLQ+EEI+LLA
Sbjct: 104 PGATLFTKDLERNGVDTEEEIYRVTYFGKGRMPGFGEKCTPRGQCTFGPRLQDEEIKLLA 163

Query: 160 KFVKIQADRGWP 169
           +FVK QAD+GWP
Sbjct: 164 EFVKFQADQGWP 170

The following BLAST results are available for this feature:

BLAST of CsaV3_6G053010 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004134523.1	6.6e-95	100.00	cytochrome c6, chloroplastic [Cucumis sativus] >KAE8647784.1 hypothetical protei...	[more]
XP_008439440.1	1.3e-79	88.76	PREDICTED: cytochrome c6, chloroplastic [Cucumis melo] >XP_008439441.1 PREDICTED...	[more]
XP_038877732.1	2.0e-75	84.02	cytochrome c6, chloroplastic [Benincasa hispida]	[more]
XP_022926876.1	3.3e-70	79.29	cytochrome c6, chloroplastic [Cucurbita moschata]	[more]
XP_023517564.1	1.6e-69	78.70	cytochrome c6, chloroplastic [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsaV3_6G053010 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93VA3	1.3e-48	68.94	Cytochrome c6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PETJ PE=1 SV=1	[more]
P25935	1.1e-10	29.46	Cytochrome c6 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 G...	[more]
P07497	1.1e-10	29.46	Cytochrome c6 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) ...	[more]
P00110	1.8e-10	37.11	Cytochrome c6 OS=Bumilleriopsis filiformis OX=2835 GN=petJ PE=1 SV=1	[more]
P46445	2.0e-09	34.38	Cytochrome c6 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=petJ...	[more]

BLAST of CsaV3_6G053010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPD1	3.4e-81	90.59	Cytochrome c domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G53860...	[more]
A0A1S3AYD3	6.5e-80	88.76	cytochrome c6, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103484246 PE=3 SV=1	[more]
A0A6J1EG38	1.6e-70	79.29	cytochrome c6, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111433859 PE=3 ...	[more]
A0A6J1KPJ4	1.4e-69	78.70	cytochrome c6, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111497114 PE=3 SV...	[more]
A0A6J1CXZ2	5.9e-65	75.88	cytochrome c6, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111015832 PE=3...	[more]

BLAST of CsaV3_6G053010 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G45040.1	9.0e-50	68.94	Cytochrome c	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009056	Cytochrome c-like domain	PFAM	PF13442	Cytochrome_CBB3	coord: 73..137 e-value: 8.2E-11 score: 42.1
IPR009056	Cytochrome c-like domain	PROSITE	PS51007	CYTC	coord: 71..163 score: 11.379664
IPR036909	Cytochrome c-like domain superfamily	GENE3D	1.10.760.10		coord: 69..170 e-value: 1.3E-38 score: 133.3
IPR036909	Cytochrome c-like domain superfamily	SUPERFAMILY	46626	Cytochrome c	coord: 62..169
IPR023655	Cytochrome c6	PANTHER	PTHR34688	CYTOCHROME C6, CHLOROPLASTIC	coord: 30..169

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G053010.1	CsaV3_6G053010.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0020037	heme binding
molecular_function	GO:0005506	iron ion binding