CsaV3_6G052630 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G052630
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like
Location	chr6: 30668241 .. 30669352 (-)
RNA-Seq Expression	CsaV3_6G052630
Synteny	CsaV3_6G052630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGTTTCGAAACGATATTGGAACTGTCAATGACTTGTGGTTGCTTGACGTGGTTGTGTTTTTCCATAGGTCCTCACTCTCTGTCCCTCTTCCCTCTTCTCCCTTCCCCCTAAACACTCTCTCTTTCTTCTCCATTATTTCTTTATTTATGCTTTTATACCTTTCTTCTACCTCCTTCACTTTCTCACTTCCATTCTCAATTCCTTTCCCTAATTTTATTTATTAATCCATCCATCCATCCATCCACCATGTTGGCCATGGAAGTGACCGCCTCCTCCGCCGTCACCACTTACACCTCCGCCTCTACCACCTCCGACAACCATCCCCACTATCCTCTCTTGCTCCCCGCACCACCATCTCCTCCCACACCTGCGCTCAGCAGGTACTTCCATTTTATTTCATCATTTTCATCTCTCTCCCCTCATCTCTATCTTATAACAAATGTGAGATTTATTCATTTTTCTTCTCAAGGTTAAGTGTATAAAGTTTAATGCGTAGAAGTAAGAAGGCCCATGCACTCATAATAAATTGGCTTTTTATCTCTATTGTTATCGTTACATAGTAAAAAGATAAAAATGAATTCAATCCTTTTTGTCTATATATATATTTTAATAAAGAAGAAATTAGAGTAGATGAGTTGAGTCGACTACACTAACCCGTTAACACAGGTACGAGTCACAGAAGCGGCGAGACTGGAACACGTTCGGGCAGTACCTAAAGAACCACCGCCCACCACTCACGCTATCCCGTTGCAGCGGGGCTCATATTCTCGAGTTCCTCCGCTACCTGGACCAGTTCGGTAAGACGAAGGTCCACACCTCCAGCTGTCCCTTTTTCGGTCACCCACAACCCCCTGCTCCCTGCCCTTGTCCTCTCCGTCAGGCCTGGGGCAGCCTCGACGCCCTCATCGGCCGCCTCCGCGCAGCCTTTGAGGAGAACGGCGGCCAACCTGATACCAACCCGTTCGGTACACGAGCCGTGAGGCTGTATTTAAGGGAAGTGAGAGAGTCGCAGGCGAAAGCTAGAGGAATTGCTTACGAGAAGAAGAAGAGGAAGAAATCCGGGATGGCTCCGCTAAAGATCAACCACCATCAACCCATGCCTTCCTAA

mRNA sequence

ATGACGTTTCGAAACGATATTGGAACTGTCAATGACTTGTGGTTGCTTGACGTGGTTGTGTTTTTCCATAGGTACGAGTCACAGAAGCGGCGAGACTGGAACACGTTCGGGCAGTACCTAAAGAACCACCGCCCACCACTCACGCTATCCCGTTGCAGCGGGGCTCATATTCTCGAGTTCCTCCGCTACCTGGACCAGTTCGGTAAGACGAAGGTCCACACCTCCAGCTGTCCCTTTTTCGGTCACCCACAACCCCCTGCTCCCTGCCCTTGTCCTCTCCGTCAGGCCTGGGGCAGCCTCGACGCCCTCATCGGCCGCCTCCGCGCAGCCTTTGAGGAGAACGGCGGCCAACCTGATACCAACCCGTTCGGTACACGAGCCGTGAGGCTGTATTTAAGGGAAGTGAGAGAGTCGCAGGCGAAAGCTAGAGGAATTGCTTACGAGAAGAAGAAGAGGAAGAAATCCGGGATGGCTCCGCTAAAGATCAACCACCATCAACCCATGCCTTCCTAA

Coding sequence (CDS)

ATGACGTTTCGAAACGATATTGGAACTGTCAATGACTTGTGGTTGCTTGACGTGGTTGTGTTTTTCCATAGGTACGAGTCACAGAAGCGGCGAGACTGGAACACGTTCGGGCAGTACCTAAAGAACCACCGCCCACCACTCACGCTATCCCGTTGCAGCGGGGCTCATATTCTCGAGTTCCTCCGCTACCTGGACCAGTTCGGTAAGACGAAGGTCCACACCTCCAGCTGTCCCTTTTTCGGTCACCCACAACCCCCTGCTCCCTGCCCTTGTCCTCTCCGTCAGGCCTGGGGCAGCCTCGACGCCCTCATCGGCCGCCTCCGCGCAGCCTTTGAGGAGAACGGCGGCCAACCTGATACCAACCCGTTCGGTACACGAGCCGTGAGGCTGTATTTAAGGGAAGTGAGAGAGTCGCAGGCGAAAGCTAGAGGAATTGCTTACGAGAAGAAGAAGAGGAAGAAATCCGGGATGGCTCCGCTAAAGATCAACCACCATCAACCCATGCCTTCCTAA

Protein sequence

MTFRNDIGTVNDLWLLDVVVFFHRYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSSCPFFGHPQPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGQPDTNPFGTRAVRLYLREVRESQAKARGIAYEKKKRKKSGMAPLKINHHQPMPS*

Homology

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BLAST of CsaV3_6G052630 vs. NCBI nr
Match: KAE8647775.1 (hypothetical protein Csa_003072 [Cucumis sativus])

HSP 1 Score: 363.6 bits (932), Expect = 9.2e-97
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0


Query: 1   MTFRNDIGTVNDLWLLDVVVFFHRYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEF 60
           MTFRNDIGTVNDLWLLDVVVFFHRYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEF
Sbjct: 1   MTFRNDIGTVNDLWLLDVVVFFHRYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEF 60

Query: 61  LRYLDQFGKTKVHTSSCPFFGHPQPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGQPDT 120
           LRYLDQFGKTKVHTSSCPFFGHPQPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGQPDT
Sbjct: 61  LRYLDQFGKTKVHTSSCPFFGHPQPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGQPDT 120

Query: 121 NPFGTRAVRLYLREVRESQAKARGIAYEKKKRKKSGMAPLKINHHQPMPS 171
           NPFGTRAVRLYLREVRESQAKARGIAYEKKKRKKSGMAPLKINHHQPMPS
Sbjct: 121 NPFGTRAVRLYLREVRESQAKARGIAYEKKKRKKSGMAPLKINHHQPMPS 170

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BLAST of CsaV3_6G052630 vs. NCBI nr
Match: XP_004134890.2 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 [Cucumis sativus])

HSP 1 Score: 315.1 bits (806), Expect = 3.8e-82
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0


Query: 24  RYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSSCPFFGHP 83
           RYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSSCPFFGHP
Sbjct: 45  RYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSSCPFFGHP 104

Query: 84  QPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGQPDTNPFGTRAVRLYLREVRESQAKAR 143
           QPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGQPDTNPFGTRAVRLYLREVRESQAKAR
Sbjct: 105 QPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGQPDTNPFGTRAVRLYLREVRESQAKAR 164

Query: 144 GIAYEKKKRKKSGMAPLKINHHQPMPS 171
           GIAYEKKKRKKSGMAPLKINHHQPMPS
Sbjct: 165 GIAYEKKKRKKSGMAPLKINHHQPMPS 191

[Close]

BLAST of CsaV3_6G052630 vs. NCBI nr
Match: XP_008439509.1 (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucumis melo] >KAA0052458.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucumis melo var. makuwa] >TYK13364.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucumis melo var. makuwa])

HSP 1 Score: 308.1 bits (788), Expect = 4.6e-80
Identity = 144/147 (97.96%), Postives = 145/147 (98.64%), Query Frame = 0


Query: 24  RYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSSCPFFGHP 83
           RYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSSCPFFGHP
Sbjct: 44  RYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSSCPFFGHP 103

Query: 84  QPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGQPDTNPFGTRAVRLYLREVRESQAKAR 143
           QPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGQP+TNPFGTRAVRLYLREVRESQAKAR
Sbjct: 104 QPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGQPETNPFGTRAVRLYLREVRESQAKAR 163

Query: 144 GIAYEKKKRKKSGMAPLKINHHQPMPS 171
           GIAYEKKKRKKS MA LKINHHQPMPS
Sbjct: 164 GIAYEKKKRKKSAMASLKINHHQPMPS 190

[Close]

BLAST of CsaV3_6G052630 vs. NCBI nr
Match: XP_038881876.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Benincasa hispida])

HSP 1 Score: 288.1 bits (736), Expect = 4.9e-74
Identity = 137/146 (93.84%), Postives = 139/146 (95.21%), Query Frame = 0


Query: 24  RYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSSCPFFGHP 83
           RYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTS CPFFGHP
Sbjct: 48  RYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHP 107

Query: 84  QPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGQPDTNPFGTRAVRLYLREVRESQAKAR 143
           QPPAPCPCPLRQAWGSLDALIGRLRAAFEENGG P+TNPFGTRAVRLYLREVRESQAKAR
Sbjct: 108 QPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRESQAKAR 167

Query: 144 GIAYEKKKRKKSGMAPLKINHHQPMP 170
           GIAYEKKKRKKSGM  +K N  QPMP
Sbjct: 168 GIAYEKKKRKKSGMPSVKKN--QPMP 191

[Close]

BLAST of CsaV3_6G052630 vs. NCBI nr
Match: XP_023544575.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 285.8 bits (730), Expect = 2.4e-73
Identity = 135/146 (92.47%), Postives = 138/146 (94.52%), Query Frame = 0


Query: 24  RYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSSCPFFGHP 83
           RYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTS CPFFGHP
Sbjct: 49  RYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHP 108

Query: 84  QPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGQPDTNPFGTRAVRLYLREVRESQAKAR 143
           QPPAPCPCPLRQAWGSLDALIGRLRAAFEENGG P+TNPFGTRAVRLYLREVR+SQAKAR
Sbjct: 109 QPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKAR 168

Query: 144 GIAYEKKKRKKSGMAPLKINHHQPMP 170
           GIAYEKKKRKKS MAPLK  H +  P
Sbjct: 169 GIAYEKKKRKKSAMAPLK-KHQRHAP 193

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BLAST of CsaV3_6G052630 vs. ExPASy Swiss-Prot
Match: Q9LW68 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LSH4 PE=1 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 5.5e-68
Identity = 117/131 (89.31%), Postives = 125/131 (95.42%), Query Frame = 0


Query: 24  RYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSSCPFFGHP 83
           RYE+QKRRDWNTFGQYL+NHRPPL+LSRCSGAH+LEFLRYLDQFGKTKVHT  CPFFGHP
Sbjct: 48  RYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGHP 107

Query: 84  QPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGQPDTNPFGTRAVRLYLREVRESQAKAR 143
            PPAPC CPLRQAWGSLDALIGRLRAAFEENGG P+TNPFG RAVRLYLREVR+SQAKAR
Sbjct: 108 NPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAKAR 167

Query: 144 GIAYEKKKRKK 155
           GI+YEKKKRK+
Sbjct: 168 GISYEKKKRKR 178

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BLAST of CsaV3_6G052630 vs. ExPASy Swiss-Prot
Match: A2XVI8 (Protein G1-like4 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_16643 PE=3 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 1.2e-67
Identity = 117/155 (75.48%), Postives = 133/155 (85.81%), Query Frame = 0


Query: 24  RYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSSCPFFGHP 83
           RYE+QKRRDWNTFGQYL+NHRPPL+L++CSGAH+LEFLRYLDQFGKTKVHT++CPFFGHP
Sbjct: 41  RYEAQKRRDWNTFGQYLRNHRPPLSLAQCSGAHVLEFLRYLDQFGKTKVHTAACPFFGHP 100

Query: 84  QPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGQPDTNPFGTRAVRLYLREVRESQAKAR 143
            PPAPCPCPLRQAWGSLDAL+GRLRAAFEENGG+P++NPF  RAVRLYLREVRE QA+AR
Sbjct: 101 SPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGRPESNPFAARAVRLYLREVREHQARAR 160

Query: 144 GIAYEKKKRKKSGMAPLK---------INHHQPMP 170
           G++YEKKKRKK     L+           HH P P
Sbjct: 161 GVSYEKKKRKKPQQQQLQGGDSSGLHGHQHHPPPP 195

[Close]

BLAST of CsaV3_6G052630 vs. ExPASy Swiss-Prot
Match: Q7XRS1 (Protein G1-like4 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L4 PE=1 SV=2)

HSP 1 Score: 257.3 bits (656), Expect = 1.2e-67
Identity = 117/155 (75.48%), Postives = 133/155 (85.81%), Query Frame = 0


Query: 24  RYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSSCPFFGHP 83
           RYE+QKRRDWNTFGQYL+NHRPPL+L++CSGAH+LEFLRYLDQFGKTKVHT++CPFFGHP
Sbjct: 41  RYEAQKRRDWNTFGQYLRNHRPPLSLAQCSGAHVLEFLRYLDQFGKTKVHTAACPFFGHP 100

Query: 84  QPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGQPDTNPFGTRAVRLYLREVRESQAKAR 143
            PPAPCPCPLRQAWGSLDAL+GRLRAAFEENGG+P++NPF  RAVRLYLREVRE QA+AR
Sbjct: 101 SPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGRPESNPFAARAVRLYLREVREHQARAR 160

Query: 144 GIAYEKKKRKKSGMAPLK---------INHHQPMP 170
           G++YEKKKRKK     L+           HH P P
Sbjct: 161 GVSYEKKKRKKPQQQQLQGGDSSGLHGHQHHPPPP 195

[Close]

BLAST of CsaV3_6G052630 vs. ExPASy Swiss-Prot
Match: Q7XDD0 (Protein G1-like5 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L5 PE=1 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 1.2e-67
Identity = 118/159 (74.21%), Postives = 132/159 (83.02%), Query Frame = 0


Query: 24  RYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSSCPFFGHP 83
           RYESQKRRDWNTFGQYL+NHRPPL+L+RCSGAH+LEFLRYLDQFGKTKVH  +CPFFGHP
Sbjct: 40  RYESQKRRDWNTFGQYLRNHRPPLSLARCSGAHVLEFLRYLDQFGKTKVHAPACPFFGHP 99

Query: 84  QPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGQPDTNPFGTRAVRLYLREVRESQAKAR 143
            PPAPCPCPLRQAWGSLDAL+GRLRAA+EENGG+P+ NPFG RAVRLYLREVRE QA+AR
Sbjct: 100 APPAPCPCPLRQAWGSLDALVGRLRAAYEENGGRPENNPFGARAVRLYLREVREHQARAR 159

Query: 144 GIAYEKKKRKK-------------SGMAPLKINHHQPMP 170
           G++YEKKKRKK             +    L  +HH P P
Sbjct: 160 GVSYEKKKRKKPPHPSSAAAAHDDAANGALHHHHHMPPP 198

[Close]

BLAST of CsaV3_6G052630 vs. ExPASy Swiss-Prot
Match: A2XAV5 (Protein G1-like6 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_09389 PE=3 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 1.6e-67
Identity = 115/135 (85.19%), Postives = 126/135 (93.33%), Query Frame = 0


Query: 24  RYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSSCPFFGHP 83
           RYESQKRRDWNTFGQYL+NHRPPL+LSRCSGAH+LEFL+Y+DQFGKTKVHT  CPF+GHP
Sbjct: 80  RYESQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLKYMDQFGKTKVHTPVCPFYGHP 139

Query: 84  QPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGQPDTNPFGTRAVRLYLREVRESQAKAR 143
            PPAPCPCPLRQAWGSLDALIGRLRAA+EENGG P+ NPFG RAVRLYLREVRE+QA+AR
Sbjct: 140 NPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGTPEMNPFGARAVRLYLREVRETQARAR 199

Query: 144 GIAYEKKKRKKSGMA 159
           GI+YEKKKRKK   A
Sbjct: 200 GISYEKKKRKKPSSA 214

[Close]

BLAST of CsaV3_6G052630 vs. ExPASy TrEMBL
Match: A0A0A0KPA1 (ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G526250 PE=3 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 1.8e-82
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0


Query: 24  RYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSSCPFFGHP 83
           RYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSSCPFFGHP
Sbjct: 45  RYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSSCPFFGHP 104

Query: 84  QPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGQPDTNPFGTRAVRLYLREVRESQAKAR 143
           QPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGQPDTNPFGTRAVRLYLREVRESQAKAR
Sbjct: 105 QPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGQPDTNPFGTRAVRLYLREVRESQAKAR 164

Query: 144 GIAYEKKKRKKSGMAPLKINHHQPMPS 171
           GIAYEKKKRKKSGMAPLKINHHQPMPS
Sbjct: 165 GIAYEKKKRKKSGMAPLKINHHQPMPS 191

[Close]

BLAST of CsaV3_6G052630 vs. ExPASy TrEMBL
Match: A0A5A7UB86 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G009900 PE=3 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 2.2e-80
Identity = 144/147 (97.96%), Postives = 145/147 (98.64%), Query Frame = 0


Query: 24  RYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSSCPFFGHP 83
           RYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSSCPFFGHP
Sbjct: 44  RYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSSCPFFGHP 103

Query: 84  QPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGQPDTNPFGTRAVRLYLREVRESQAKAR 143
           QPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGQP+TNPFGTRAVRLYLREVRESQAKAR
Sbjct: 104 QPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGQPETNPFGTRAVRLYLREVRESQAKAR 163

Query: 144 GIAYEKKKRKKSGMAPLKINHHQPMPS 171
           GIAYEKKKRKKS MA LKINHHQPMPS
Sbjct: 164 GIAYEKKKRKKSAMASLKINHHQPMPS 190

[Close]

BLAST of CsaV3_6G052630 vs. ExPASy TrEMBL
Match: A0A1S3AZK8 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucumis melo OX=3656 GN=LOC103484288 PE=3 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 2.2e-80
Identity = 144/147 (97.96%), Postives = 145/147 (98.64%), Query Frame = 0


Query: 24  RYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSSCPFFGHP 83
           RYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSSCPFFGHP
Sbjct: 44  RYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSSCPFFGHP 103

Query: 84  QPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGQPDTNPFGTRAVRLYLREVRESQAKAR 143
           QPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGQP+TNPFGTRAVRLYLREVRESQAKAR
Sbjct: 104 QPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGQPETNPFGTRAVRLYLREVRESQAKAR 163

Query: 144 GIAYEKKKRKKSGMAPLKINHHQPMPS 171
           GIAYEKKKRKKS MA LKINHHQPMPS
Sbjct: 164 GIAYEKKKRKKSAMASLKINHHQPMPS 190

[Close]

BLAST of CsaV3_6G052630 vs. ExPASy TrEMBL
Match: A0A6J1ED05 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucurbita moschata OX=3662 GN=LOC111433058 PE=3 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 1.2e-73
Identity = 135/146 (92.47%), Postives = 138/146 (94.52%), Query Frame = 0


Query: 24  RYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSSCPFFGHP 83
           RYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTS CPFFGHP
Sbjct: 43  RYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHP 102

Query: 84  QPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGQPDTNPFGTRAVRLYLREVRESQAKAR 143
           QPPAPCPCPLRQAWGSLDALIGRLRAAFEENGG P+TNPFGTRAVRLYLREVR+SQAKAR
Sbjct: 103 QPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKAR 162

Query: 144 GIAYEKKKRKKSGMAPLKINHHQPMP 170
           GIAYEKKKRKKS MAPLK  H +  P
Sbjct: 163 GIAYEKKKRKKSAMAPLK-KHQRHAP 187

[Close]

BLAST of CsaV3_6G052630 vs. ExPASy TrEMBL
Match: A0A6J1IPW9 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucurbita maxima OX=3661 GN=LOC111478381 PE=3 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 3.8e-72
Identity = 135/150 (90.00%), Postives = 139/150 (92.67%), Query Frame = 0


Query: 24  RYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSSCPFFGHP 83
           RYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTS CPFFGHP
Sbjct: 47  RYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHP 106

Query: 84  QPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGQPDTNPFGTRAVRLYLREVRESQAKAR 143
           QPPAPCPCPLRQAWGSLDALIGRLRAAFEENGG P+TNPFGTRAVRLYLREVR+SQAKAR
Sbjct: 107 QPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKAR 166

Query: 144 GIAYEKKKRKKSGMAPLKINHH----QPMP 170
           GIAYE KKRKKS MAPLK +      +PMP
Sbjct: 167 GIAYE-KKRKKSAMAPLKKHQRHAPDEPMP 195

[Close]

BLAST of CsaV3_6G052630 vs. TAIR 10
Match: AT3G23290.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 258.5 bits (659), Expect = 3.9e-69
Identity = 117/131 (89.31%), Postives = 125/131 (95.42%), Query Frame = 0


Query: 24  RYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSSCPFFGHP 83
           RYE+QKRRDWNTFGQYL+NHRPPL+LSRCSGAH+LEFLRYLDQFGKTKVHT  CPFFGHP
Sbjct: 48  RYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGHP 107

Query: 84  QPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGQPDTNPFGTRAVRLYLREVRESQAKAR 143
            PPAPC CPLRQAWGSLDALIGRLRAAFEENGG P+TNPFG RAVRLYLREVR+SQAKAR
Sbjct: 108 NPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAKAR 167

Query: 144 GIAYEKKKRKK 155
           GI+YEKKKRK+
Sbjct: 168 GISYEKKKRKR 178

[Close]

BLAST of CsaV3_6G052630 vs. TAIR 10
Match: AT2G31160.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 254.6 bits (649), Expect = 5.6e-68
Identity = 113/131 (86.26%), Postives = 126/131 (96.18%), Query Frame = 0


Query: 24  RYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSSCPFFGHP 83
           RYE+QKRRDWNTFGQYL+NHRPPL+LSRCSGAH+LEFLRYLDQFGKTKVHT+ C F+GHP
Sbjct: 54  RYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTNICHFYGHP 113

Query: 84  QPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGQPDTNPFGTRAVRLYLREVRESQAKAR 143
            PPAPCPCPLRQAWGSLDALIGRLRAAFEENGG+P+TNPFG RAVRLYLREVR+ Q+KAR
Sbjct: 114 NPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYLREVRDMQSKAR 173

Query: 144 GIAYEKKKRKK 155
           G++YEKKKRK+
Sbjct: 174 GVSYEKKKRKR 184

[Close]

BLAST of CsaV3_6G052630 vs. TAIR 10
Match: AT1G07090.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 245.4 bits (625), Expect = 3.4e-65
Identity = 109/131 (83.21%), Postives = 123/131 (93.89%), Query Frame = 0


Query: 24  RYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSSCPFFGHP 83
           RYESQKRRDWNTF QYLKNH+PPL LSRCSGAH++EFL+YLDQFGKTKVH ++CP+FGH 
Sbjct: 31  RYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGKTKVHVAACPYFGHQ 90

Query: 84  QPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGQPDTNPFGTRAVRLYLREVRESQAKAR 143
           QPP+PC CPL+QAWGSLDALIGRLRAA+EENGG+PD+NPF  RAVR+YLREVRESQAKAR
Sbjct: 91  QPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRIYLREVRESQAKAR 150

Query: 144 GIAYEKKKRKK 155
           GI YEKKKRK+
Sbjct: 151 GIPYEKKKRKR 161

[Close]

BLAST of CsaV3_6G052630 vs. TAIR 10
Match: AT5G28490.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 236.9 bits (603), Expect = 1.2e-62
Identity = 109/151 (72.19%), Postives = 125/151 (82.78%), Query Frame = 0


Query: 24  RYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSSCPFFGHP 83
           RYE+QKRRDWNTF QYL+NHRPPL+L  CSGAH+LEFLRYLDQFGKTKVH  +C FFG P
Sbjct: 25  RYENQKRRDWNTFCQYLRNHRPPLSLPSCSGAHVLEFLRYLDQFGKTKVHHQNCAFFGLP 84

Query: 84  QPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGQPDTNPFGTRAVRLYLREVRESQAKAR 143
            PPAPCPCPLRQAWGSLDALIGRLRAA+EENGG P+ NPFG+RAVRL+LREVR+ QAKAR
Sbjct: 85  NPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGPPEANPFGSRAVRLFLREVRDFQAKAR 144

Query: 144 GIAYEKKKR-----KKSGMAPLKINHHQPMP 170
           G++YEKK++     K     PL++   Q  P
Sbjct: 145 GVSYEKKRKRVNRQKPQTQPPLQLQQQQQQP 175

[Close]

BLAST of CsaV3_6G052630 vs. TAIR 10
Match: AT3G04510.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 228.8 bits (582), Expect = 3.3e-60
Identity = 99/130 (76.15%), Postives = 120/130 (92.31%), Query Frame = 0


Query: 24  RYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSSCPFFGHP 83
           RYE+QKRRDWNTF QYL+NH PPL+L+ CSGAH+L+FLRYLDQFGKTKVH  +C FFG P
Sbjct: 33  RYENQKRRDWNTFCQYLRNHHPPLSLASCSGAHVLDFLRYLDQFGKTKVHHQNCAFFGLP 92

Query: 84  QPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGQPDTNPFGTRAVRLYLREVRESQAKAR 143
            PPAPCPCPLRQAWGSLDALIGRLRAA+EENGG P+T+PFG+R+VR++LREVR+ QAK+R
Sbjct: 93  NPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGAPETSPFGSRSVRIFLREVRDFQAKSR 152

Query: 144 GIAYEKKKRK 154
           G++YEKK+++
Sbjct: 153 GVSYEKKRKR 162

The following BLAST results are available for this feature:

BLAST of CsaV3_6G052630 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647775.1	9.2e-97	100.00	hypothetical protein Csa_003072 [Cucumis sativus]	[more]
XP_004134890.2	3.8e-82	100.00	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 [Cucumis sativus]	[more]
XP_008439509.1	4.6e-80	97.96	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucumis melo] >KAA00...	[more]
XP_038881876.1	4.9e-74	93.84	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Benincasa hispida]	[more]
XP_023544575.1	2.4e-73	92.47	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsaV3_6G052630 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LW68	5.5e-68	89.31	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
A2XVI8	1.2e-67	75.48	Protein G1-like4 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_16643 PE=3 SV=1	[more]
Q7XRS1	1.2e-67	75.48	Protein G1-like4 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L4 PE=1 SV=2	[more]
Q7XDD0	1.2e-67	74.21	Protein G1-like5 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L5 PE=1 SV=1	[more]
A2XAV5	1.6e-67	85.19	Protein G1-like6 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_09389 PE=3 SV=1	[more]

BLAST of CsaV3_6G052630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPA1	1.8e-82	100.00	ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G526250 PE=3 S...	[more]
A0A5A7UB86	2.2e-80	97.96	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucumis melo var. makuwa OX=1...	[more]
A0A1S3AZK8	2.2e-80	97.96	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1ED05	1.2e-73	92.47	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1IPW9	3.8e-72	90.00	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of CsaV3_6G052630 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G23290.2	3.9e-69	89.31	Protein of unknown function (DUF640)	[more]
AT2G31160.1	5.6e-68	86.26	Protein of unknown function (DUF640)	[more]
AT1G07090.1	3.4e-65	83.21	Protein of unknown function (DUF640)	[more]
AT5G28490.1	1.2e-62	72.19	Protein of unknown function (DUF640)	[more]
AT3G04510.1	3.3e-60	76.15	Protein of unknown function (DUF640)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 23..137 e-value: 5.6E-64 score: 214.0
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 24..151 score: 83.200531
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 142..170
None	No IPR available	PANTHER	PTHR31165:SF65	PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-LIKE	coord: 23..155
IPR040222	ALOG family	PANTHER	PTHR31165	PROTEIN G1-LIKE2	coord: 23..155

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G052630.1	CsaV3_6G052630.1	mRNA