CsaV3_6G049890 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G049890
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr6: 29102031 .. 29102348 (-)
RNA-Seq Expression	CsaV3_6G049890
Synteny	CsaV3_6G049890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGAGCCTCTACGATGATCGGCCTTTTCTCCTTGGAGTCATGTTGGAATGCTCAAATTCCATCAACTACAGCGATAAAGACAGAGAAGGAGTAGGAGAAGGAAAAGGAGAGAGAGAGAGAAAGAGAGGGAGAGCTAATAGCAATTGCAGTGGGCAGAGAGCCTACAGAGACATATCAATATCGAATATTGTTGCGGCAAAAGTAACGAAGGAAGGTGACTATGTTCAACGGTATGTCTTCGGTCTTCGCCTCTTTCACGGGCATAAAAGTATTTATGTTCCACTAAACTCCTTAACCATCTCTATGGTTCCTTAA

mRNA sequence

ATGTTGAGCCTCTACGATGATCGGCCTTTTCTCCTTGGAGTCATGTTGGAATGCTCAAATTCCATCAACTACAGCGATAAAGACAGAGAAGGAGTAGGAGAAGGAAAAGGAGAGAGAGAGAGAAAGAGAGGGAGAGCTAATAGCAATTGCAGTGGGCAGAGAGCCTACAGAGACATATCAATATCGAATATTGTTGCGGCAAAAGTAACGAAGGAAGGTGACTATGTTCAACGGTATGTCTTCGGTCTTCGCCTCTTTCACGGGCATAAAAGTATTTATGTTCCACTAAACTCCTTAACCATCTCTATGGTTCCTTAA

Coding sequence (CDS)

ATGTTGAGCCTCTACGATGATCGGCCTTTTCTCCTTGGAGTCATGTTGGAATGCTCAAATTCCATCAACTACAGCGATAAAGACAGAGAAGGAGTAGGAGAAGGAAAAGGAGAGAGAGAGAGAAAGAGAGGGAGAGCTAATAGCAATTGCAGTGGGCAGAGAGCCTACAGAGACATATCAATATCGAATATTGTTGCGGCAAAAGTAACGAAGGAAGGTGACTATGTTCAACGGTATGTCTTCGGTCTTCGCCTCTTTCACGGGCATAAAAGTATTTATGTTCCACTAAACTCCTTAACCATCTCTATGGTTCCTTAA

Protein sequence

MLSLYDDRPFLLGVMLECSNSINYSDKDREGVGEGKGERERKRGRANSNCSGQRAYRDISISNIVAAKVTKEGDYVQRYVFGLRLFHGHKSIYVPLNSLTISMVP*

Homology

[Close]

BLAST of CsaV3_6G049890 vs. NCBI nr
Match: KGN49203.1 (hypothetical protein Csa_002915 [Cucumis sativus])

HSP 1 Score: 211.8 bits (538), Expect = 2.8e-51
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MLSLYDDRPFLLGVMLECSNSINYSDKDREGVGEGKGERERKRGRANSNCSGQRAYRDIS 60
           MLSLYDDRPFLLGVMLECSNSINYSDKDREGVGEGKGERERKRGRANSNCSGQRAYRDIS
Sbjct: 1   MLSLYDDRPFLLGVMLECSNSINYSDKDREGVGEGKGERERKRGRANSNCSGQRAYRDIS 60

Query: 61  ISNIVAAKVTKEGDYVQRYVFGLRLFHGHKSIYVPLNSLTISMVP 106
           ISNIVAAKVTKEGDYVQRYVFGLRLFHGHKSIYVPLNSLTISMVP
Sbjct: 61  ISNIVAAKVTKEGDYVQRYVFGLRLFHGHKSIYVPLNSLTISMVP 105

[Close]

BLAST of CsaV3_6G049890 vs. NCBI nr
Match: KAA0052708.1 (hypothetical protein E6C27_scaffold120G003210 [Cucumis melo var. makuwa] >TYK13116.1 hypothetical protein E5676_scaffold255G007260 [Cucumis melo var. makuwa])

HSP 1 Score: 56.2 bits (134), Expect = 2.0e-04
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 0


Query: 52  GQRAYRDISISNIVAAKVTKEGDYVQR 79
           GQRAYRDISISNIVAAKVTKEGDYVQR
Sbjct: 105 GQRAYRDISISNIVAAKVTKEGDYVQR 131

[Close]

BLAST of CsaV3_6G049890 vs. ExPASy TrEMBL
Match: A0A0A0KI11 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G517110 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 1.3e-51
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MLSLYDDRPFLLGVMLECSNSINYSDKDREGVGEGKGERERKRGRANSNCSGQRAYRDIS 60
           MLSLYDDRPFLLGVMLECSNSINYSDKDREGVGEGKGERERKRGRANSNCSGQRAYRDIS
Sbjct: 1   MLSLYDDRPFLLGVMLECSNSINYSDKDREGVGEGKGERERKRGRANSNCSGQRAYRDIS 60

Query: 61  ISNIVAAKVTKEGDYVQRYVFGLRLFHGHKSIYVPLNSLTISMVP 106
           ISNIVAAKVTKEGDYVQRYVFGLRLFHGHKSIYVPLNSLTISMVP
Sbjct: 61  ISNIVAAKVTKEGDYVQRYVFGLRLFHGHKSIYVPLNSLTISMVP 105

[Close]

BLAST of CsaV3_6G049890 vs. ExPASy TrEMBL
Match: A0A5D3CRT7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G007260 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 9.5e-05
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 0


Query: 52  GQRAYRDISISNIVAAKVTKEGDYVQR 79
           GQRAYRDISISNIVAAKVTKEGDYVQR
Sbjct: 105 GQRAYRDISISNIVAAKVTKEGDYVQR 131

The following BLAST results are available for this feature:

BLAST of CsaV3_6G049890 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN49203.1	2.8e-51	100.00	hypothetical protein Csa_002915 [Cucumis sativus]	[more]
KAA0052708.1	2.0e-04	100.00	hypothetical protein E6C27_scaffold120G003210 [Cucumis melo var. makuwa] >TYK131...	[more]

BLAST of CsaV3_6G049890 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G049890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KI11	1.3e-51	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G517110 PE=4 SV=1	[more]
A0A5D3CRT7	9.5e-05	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CsaV3_6G049890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..47
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..49

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G049890.1	CsaV3_6G049890.1	mRNA