CsaV3_6G049710 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G049710
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	sugar carrier protein C-like
Location	chr6: 29001467 .. 29001748 (+)
RNA-Seq Expression	CsaV3_6G049710
Synteny	CsaV3_6G049710

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTACAGTTGGAAGAGTCCTCTCCGGTGAGGGTATAACGGAGTATCCAGGAAAACTCACTCCCTTCGTCACCATAACATGCATCGTTGCTGCCATGGGTGGCCTCATTTTCGGTTATGATATTGGGATTTCAGGTATTAATTTCTTAAATGTTCCTAATCTTTATCTTCTGTTTAAAAAATATCACCATTCAAAAGTACGTGAGAAAGTTCGAACTGCTACTGCTACTACGATATTTCAAGTCTTAGAAGTATATTTCTTAAATGAATTGAAAAGTTGA

mRNA sequence

ATGGCTACAGTTGGAAGAGTCCTCTCCGGTGAGGGTATAACGGAGTATCCAGGAAAACTCACTCCCTTCGTCACCATAACATGCATCGTTGCTGCCATGGGTGGCCTCATTTTCGGTATTAATTTCTTAAATGTTCCTAATCTTTATCTTCTGTTTAAAAAATATCACCATTCAAAAGTACGTGAGAAAGTTCGAACTGCTACTGCTACTACGATATTTCAAGTCTTAGAAGTATATTTCTTAAATGAATTGAAAAGTTGA

Coding sequence (CDS)

ATGGCTACAGTTGGAAGAGTCCTCTCCGGTGAGGGTATAACGGAGTATCCAGGAAAACTCACTCCCTTCGTCACCATAACATGCATCGTTGCTGCCATGGGTGGCCTCATTTTCGGTATTAATTTCTTAAATGTTCCTAATCTTTATCTTCTGTTTAAAAAATATCACCATTCAAAAGTACGTGAGAAAGTTCGAACTGCTACTGCTACTACGATATTTCAAGTCTTAGAAGTATATTTCTTAAATGAATTGAAAAGTTGA

Protein sequence

MATVGRVLSGEGITEYPGKLTPFVTITCIVAAMGGLIFGINFLNVPNLYLLFKKYHHSKVREKVRTATATTIFQVLEVYFLNELKS*

Homology

[Close]

BLAST of CsaV3_6G049710 vs. NCBI nr
Match: KAE8647681.1 (hypothetical protein Csa_004381 [Cucumis sativus])

HSP 1 Score: 173.7 bits (439), Expect = 6.9e-40
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MATVGRVLSGEGITEYPGKLTPFVTITCIVAAMGGLIFGINFLNVPNLYLLFKKYHHSKV 60
          MATVGRVLSGEGITEYPGKLTPFVTITCIVAAMGGLIFGINFLNVPNLYLLFKKYHHSKV
Sbjct: 1  MATVGRVLSGEGITEYPGKLTPFVTITCIVAAMGGLIFGINFLNVPNLYLLFKKYHHSKV 60

Query: 61 REKVRTATATTIFQVLEVYFLNELKS 87
          REKVRTATATTIFQVLEVYFLNELKS
Sbjct: 61 REKVRTATATTIFQVLEVYFLNELKS 86

[Close]

BLAST of CsaV3_6G049710 vs. NCBI nr
Match: XP_031743134.1 (sugar transport protein 1 isoform X2 [Cucumis sativus])

HSP 1 Score: 81.6 bits (200), Expect = 3.6e-12
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 0


Query: 1  MATVGRVLSGEGITEYPGKLTPFVTITCIVAAMGGLIFG 40
          MATVGRVLSGEGITEYPGKLTPFVTITCIVAAMGGLIFG
Sbjct: 1  MATVGRVLSGEGITEYPGKLTPFVTITCIVAAMGGLIFG 39

[Close]

BLAST of CsaV3_6G049710 vs. NCBI nr
Match: TYK13101.1 (sugar carrier protein C-like [Cucumis melo var. makuwa])

HSP 1 Score: 81.6 bits (200), Expect = 3.6e-12
Identity = 43/71 (60.56%), Postives = 51/71 (71.83%), Query Frame = 0


Query: 1  MATVGRVLSGEGITEYPGKLTPFVTITCIVAAMGGLIFGINF---LNVPNLYLLFKKYHH 60
          MATVGRVLSGEGITEYPGKLTPFVTITCIVAAMGGLIFG +      V ++    +K+  
Sbjct: 1  MATVGRVLSGEGITEYPGKLTPFVTITCIVAAMGGLIFGYDIGISGGVTSMDSFLEKFFR 60

Query: 61 SKVREKVRTAT 69
             + K+  +T
Sbjct: 61 DVYKTKILNST 71

[Close]

BLAST of CsaV3_6G049710 vs. NCBI nr
Match: XP_004134962.1 (sugar carrier protein C isoform X1 [Cucumis sativus] >AJP77611.1 hexose transporter 2 [Cucumis sativus])

HSP 1 Score: 81.6 bits (200), Expect = 3.6e-12
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 0


Query: 1  MATVGRVLSGEGITEYPGKLTPFVTITCIVAAMGGLIFG 40
          MATVGRVLSGEGITEYPGKLTPFVTITCIVAAMGGLIFG
Sbjct: 1  MATVGRVLSGEGITEYPGKLTPFVTITCIVAAMGGLIFG 39

[Close]

BLAST of CsaV3_6G049710 vs. NCBI nr
Match: XP_008439909.1 (PREDICTED: sugar carrier protein C-like [Cucumis melo] >KAA0052724.1 sugar carrier protein C-like [Cucumis melo var. makuwa])

HSP 1 Score: 81.6 bits (200), Expect = 3.6e-12
Identity = 43/71 (60.56%), Postives = 51/71 (71.83%), Query Frame = 0


Query: 1  MATVGRVLSGEGITEYPGKLTPFVTITCIVAAMGGLIFGINF---LNVPNLYLLFKKYHH 60
          MATVGRVLSGEGITEYPGKLTPFVTITCIVAAMGGLIFG +      V ++    +K+  
Sbjct: 1  MATVGRVLSGEGITEYPGKLTPFVTITCIVAAMGGLIFGYDIGISGGVTSMDSFLEKFFR 60

Query: 61 SKVREKVRTAT 69
             + K+  +T
Sbjct: 61 DVYKTKILNST 71

[Close]

BLAST of CsaV3_6G049710 vs. ExPASy Swiss-Prot
Match: O65413 (Sugar transport protein 12 OS=Arabidopsis thaliana OX=3702 GN=STP12 PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.1e-07
Identity = 28/39 (71.79%), Postives = 33/39 (84.62%), Query Frame = 0


Query: 1  MATVGRVLSGEGITEYPGKLTPFVTITCIVAAMGGLIFG 40
          M +VG V+ G+G  EYPGKLT +VT+TCIVAAMGGLIFG
Sbjct: 1  MPSVGIVI-GDGKKEYPGKLTLYVTVTCIVAAMGGLIFG 38

[Close]

BLAST of CsaV3_6G049710 vs. ExPASy Swiss-Prot
Match: P23586 (Sugar transport protein 1 OS=Arabidopsis thaliana OX=3702 GN=STP1 PE=1 SV=2)

HSP 1 Score: 53.9 bits (128), Expect = 1.0e-06
Identity = 30/73 (41.10%), Postives = 41/73 (56.16%), Query Frame = 0


Query: 5  GRVLSGEGITEYPGKLTPFVTITCIVAAMGGLIFGINF---LNVPNLYLLFKKYHHSKVR 64
          G  + G+G   YPGKLTPFV  TC+VAAMGGLIFG +      V ++    K++  S  R
Sbjct: 4  GGFVVGDGQKAYPGKLTPFVLFTCVVAAMGGLIFGYDIGISGGVTSMPSFLKRFFPSVYR 63

Query: 65 EKVRTATATTIFQ 75
          ++   A+     Q
Sbjct: 64 KQQEDASTNQYCQ 76

[Close]

BLAST of CsaV3_6G049710 vs. ExPASy Swiss-Prot
Match: Q41144 (Sugar carrier protein C OS=Ricinus communis OX=3988 GN=STC PE=2 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 4.4e-05
Identity = 27/58 (46.55%), Postives = 35/58 (60.34%), Query Frame = 0


Query: 9  SGEGITEYPGKLTPFVTITCIVAAMGGLIFGINF---LNVPNLYLLFKKYHHSKVREK 64
          SG     YPG LT +VT+TC+VAAMGGLIFG +      V ++    KK+  S  R+K
Sbjct: 10 SGGNRKVYPGNLTLYVTVTCVVAAMGGLIFGYDIGISGGVTSMDSFLKKFFPSVYRKK 67

[Close]

BLAST of CsaV3_6G049710 vs. ExPASy Swiss-Prot
Match: Q6Z401 (Sugar transport protein MST6 OS=Oryza sativa subsp. japonica OX=39947 GN=MST6 PE=1 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 2.2e-04
Identity = 22/35 (62.86%), Postives = 25/35 (71.43%), Query Frame = 0


Query: 5  GRVLSGEGITEYPGKLTPFVTITCIVAAMGGLIFG 40
          G V++  G  +YPGKLT FV   CIVAA GGLIFG
Sbjct: 4  GVVVNNGGGKDYPGKLTMFVLFACIVAATGGLIFG 38

[Close]

BLAST of CsaV3_6G049710 vs. ExPASy Swiss-Prot
Match: Q7EZD7 (Sugar transport protein MST3 OS=Oryza sativa subsp. japonica OX=39947 GN=MST3 PE=2 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 2.8e-04
Identity = 22/35 (62.86%), Postives = 25/35 (71.43%), Query Frame = 0


Query: 5  GRVLSGEGITEYPGKLTPFVTITCIVAAMGGLIFG 40
          G V+S     +YPGKLT FV  TC+VAA GGLIFG
Sbjct: 4  GAVVSTGAGKDYPGKLTLFVFFTCVVAATGGLIFG 38

[Close]

BLAST of CsaV3_6G049710 vs. ExPASy TrEMBL
Match: A0A0A0KHI8 (Hexose transporter 2 OS=Cucumis sativus OX=3659 GN=HT2 PE=2 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.7e-12
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 0


Query: 1  MATVGRVLSGEGITEYPGKLTPFVTITCIVAAMGGLIFG 40
          MATVGRVLSGEGITEYPGKLTPFVTITCIVAAMGGLIFG
Sbjct: 1  MATVGRVLSGEGITEYPGKLTPFVTITCIVAAMGGLIFG 39

[Close]

BLAST of CsaV3_6G049710 vs. ExPASy TrEMBL
Match: A0A5D3CMR6 (Sugar carrier protein C-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G007100 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.7e-12
Identity = 43/71 (60.56%), Postives = 51/71 (71.83%), Query Frame = 0


Query: 1  MATVGRVLSGEGITEYPGKLTPFVTITCIVAAMGGLIFGINF---LNVPNLYLLFKKYHH 60
          MATVGRVLSGEGITEYPGKLTPFVTITCIVAAMGGLIFG +      V ++    +K+  
Sbjct: 1  MATVGRVLSGEGITEYPGKLTPFVTITCIVAAMGGLIFGYDIGISGGVTSMDSFLEKFFR 60

Query: 61 SKVREKVRTAT 69
             + K+  +T
Sbjct: 61 DVYKTKILNST 71

[Close]

BLAST of CsaV3_6G049710 vs. ExPASy TrEMBL
Match: A0A5A7UBG5 (Sugar carrier protein C-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold120G003370 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.7e-12
Identity = 43/71 (60.56%), Postives = 51/71 (71.83%), Query Frame = 0


Query: 1  MATVGRVLSGEGITEYPGKLTPFVTITCIVAAMGGLIFGINF---LNVPNLYLLFKKYHH 60
          MATVGRVLSGEGITEYPGKLTPFVTITCIVAAMGGLIFG +      V ++    +K+  
Sbjct: 1  MATVGRVLSGEGITEYPGKLTPFVTITCIVAAMGGLIFGYDIGISGGVTSMDSFLEKFFR 60

Query: 61 SKVREKVRTAT 69
             + K+  +T
Sbjct: 61 DVYKTKILNST 71

[Close]

BLAST of CsaV3_6G049710 vs. ExPASy TrEMBL
Match: A0A1S3AZG7 (sugar carrier protein C-like OS=Cucumis melo OX=3656 GN=LOC103484555 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.7e-12
Identity = 43/71 (60.56%), Postives = 51/71 (71.83%), Query Frame = 0


Query: 1  MATVGRVLSGEGITEYPGKLTPFVTITCIVAAMGGLIFGINF---LNVPNLYLLFKKYHH 60
          MATVGRVLSGEGITEYPGKLTPFVTITCIVAAMGGLIFG +      V ++    +K+  
Sbjct: 1  MATVGRVLSGEGITEYPGKLTPFVTITCIVAAMGGLIFGYDIGISGGVTSMDSFLEKFFR 60

Query: 61 SKVREKVRTAT 69
             + K+  +T
Sbjct: 61 DVYKTKILNST 71

[Close]

BLAST of CsaV3_6G049710 vs. ExPASy TrEMBL
Match: A0A2C9U4M3 (MFS domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_17G033300 PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.2e-07
Identity = 36/77 (46.75%), Postives = 44/77 (57.14%), Query Frame = 0


Query: 1  MATVGRVLSGEGITEYPGKLTPFVTITCIVAAMGGLIFGINF---LNVPNLYLLFKKYHH 60
          M  VG +  G G  EYPG LTP+VT+TCIVAAMGGLIFG +      V ++    KK+  
Sbjct: 1  MPAVGGIAPGNGKKEYPGNLTPYVTVTCIVAAMGGLIFGYDIGISGGVTSMDSFLKKFFP 60

Query: 61 SKVREKVRTATATTIFQ 75
          S  R+K   AT     Q
Sbjct: 61 SVFRKKKEDATTNQYCQ 77

[Close]

BLAST of CsaV3_6G049710 vs. TAIR 10
Match: AT4G21480.1 (sugar transporter protein 12 )

HSP 1 Score: 56.2 bits (134), Expect = 1.5e-08
Identity = 28/39 (71.79%), Postives = 33/39 (84.62%), Query Frame = 0


Query: 1  MATVGRVLSGEGITEYPGKLTPFVTITCIVAAMGGLIFG 40
          M +VG V+ G+G  EYPGKLT +VT+TCIVAAMGGLIFG
Sbjct: 1  MPSVGIVI-GDGKKEYPGKLTLYVTVTCIVAAMGGLIFG 38

[Close]

BLAST of CsaV3_6G049710 vs. TAIR 10
Match: AT1G11260.1 (sugar transporter 1 )

HSP 1 Score: 53.9 bits (128), Expect = 7.4e-08
Identity = 30/73 (41.10%), Postives = 41/73 (56.16%), Query Frame = 0


Query: 5  GRVLSGEGITEYPGKLTPFVTITCIVAAMGGLIFGINF---LNVPNLYLLFKKYHHSKVR 64
          G  + G+G   YPGKLTPFV  TC+VAAMGGLIFG +      V ++    K++  S  R
Sbjct: 4  GGFVVGDGQKAYPGKLTPFVLFTCVVAAMGGLIFGYDIGISGGVTSMPSFLKRFFPSVYR 63

Query: 65 EKVRTATATTIFQ 75
          ++   A+     Q
Sbjct: 64 KQQEDASTNQYCQ 76

[Close]

BLAST of CsaV3_6G049710 vs. TAIR 10
Match: AT5G23270.1 (sugar transporter 11 )

HSP 1 Score: 43.9 bits (102), Expect = 7.7e-05
Identity = 21/31 (67.74%), Postives = 25/31 (80.65%), Query Frame = 0


Query: 9  SGEGITEYPGKLTPFVTITCIVAAMGGLIFG 40
          SG G  +Y G++T FV ITCIVAAMGGL+FG
Sbjct: 10 SGHG-GDYEGRVTAFVMITCIVAAMGGLLFG 39

[Close]

BLAST of CsaV3_6G049710 vs. TAIR 10
Match: AT1G50310.1 (sugar transporter 9 )

HSP 1 Score: 41.2 bits (95), Expect = 5.0e-04
Identity = 19/30 (63.33%), Postives = 22/30 (73.33%), Query Frame = 0


Query: 10 GEGITEYPGKLTPFVTITCIVAAMGGLIFG 40
          G G   Y G +T FV +TCIVAAMGGL+FG
Sbjct: 11 GGGGNSYEGGVTVFVIMTCIVAAMGGLLFG 40

[Close]

BLAST of CsaV3_6G049710 vs. TAIR 10
Match: AT3G19940.1 (Major facilitator superfamily protein )

HSP 1 Score: 41.2 bits (95), Expect = 5.0e-04
Identity = 19/30 (63.33%), Postives = 22/30 (73.33%), Query Frame = 0


Query: 10 GEGITEYPGKLTPFVTITCIVAAMGGLIFG 40
          G G   Y G +T FV +TCIVAAMGGL+FG
Sbjct: 11 GGGGRSYEGGVTAFVIMTCIVAAMGGLLFG 40

The following BLAST results are available for this feature:

BLAST of CsaV3_6G049710 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647681.1	6.9e-40	100.00	hypothetical protein Csa_004381 [Cucumis sativus]	[more]
XP_031743134.1	3.6e-12	100.00	sugar transport protein 1 isoform X2 [Cucumis sativus]	[more]
TYK13101.1	3.6e-12	60.56	sugar carrier protein C-like [Cucumis melo var. makuwa]	[more]
XP_004134962.1	3.6e-12	100.00	sugar carrier protein C isoform X1 [Cucumis sativus] >AJP77611.1 hexose transpor...	[more]
XP_008439909.1	3.6e-12	60.56	PREDICTED: sugar carrier protein C-like [Cucumis melo] >KAA0052724.1 sugar carri...	[more]

BLAST of CsaV3_6G049710 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O65413	2.1e-07	71.79	Sugar transport protein 12 OS=Arabidopsis thaliana OX=3702 GN=STP12 PE=2 SV=1	[more]
P23586	1.0e-06	41.10	Sugar transport protein 1 OS=Arabidopsis thaliana OX=3702 GN=STP1 PE=1 SV=2	[more]
Q41144	4.4e-05	46.55	Sugar carrier protein C OS=Ricinus communis OX=3988 GN=STC PE=2 SV=1	[more]
Q6Z401	2.2e-04	62.86	Sugar transport protein MST6 OS=Oryza sativa subsp. japonica OX=39947 GN=MST6 PE...	[more]
Q7EZD7	2.8e-04	62.86	Sugar transport protein MST3 OS=Oryza sativa subsp. japonica OX=39947 GN=MST3 PE...	[more]

BLAST of CsaV3_6G049710 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KHI8	1.7e-12	100.00	Hexose transporter 2 OS=Cucumis sativus OX=3659 GN=HT2 PE=2 SV=1	[more]
A0A5D3CMR6	1.7e-12	60.56	Sugar carrier protein C-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A5A7UBG5	1.7e-12	60.56	Sugar carrier protein C-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A1S3AZG7	1.7e-12	60.56	sugar carrier protein C-like OS=Cucumis melo OX=3656 GN=LOC103484555 PE=3 SV=1	[more]
A0A2C9U4M3	2.2e-07	46.75	MFS domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_17G033300 PE...	[more]

BLAST of CsaV3_6G049710 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G21480.1	1.5e-08	71.79	sugar transporter protein 12	[more]
AT1G11260.1	7.4e-08	41.10	sugar transporter 1	[more]
AT5G23270.1	7.7e-05	67.74	sugar transporter 11	[more]
AT1G50310.1	5.0e-04	63.33	sugar transporter 9	[more]
AT3G19940.1	5.0e-04	63.33	Major facilitator superfamily protein	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G049710.1	CsaV3_6G049710.1	mRNA