CsaV3_6G049110 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G049110
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr6: 28730670 .. 28731652 (-)
RNA-Seq Expression	CsaV3_6G049110
Synteny	CsaV3_6G049110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCTGACAGTCGCTTCAGGGATCTTTAGAAAGTGTTTTATTGGATCATTTATATTAACATCTCTTTAATATTACTGACAAAAGCTAGGTACTTACCTTTACCCTTTGTTTATATGATTATCAAATATTAATCATTTTAACAGAAGGGTTATAAGTTAAGATATGCATATTATTTTCCTGGTTTAAGATTTAATGTGAATCATGTACACATGATCTGAAGGCCAGCTCAGGAGCCGCTTAGTCTCCCTTCATAATTTAAAGCACATGCTGTGCTAGCTTGCTTCTTCATTGCCTTATGGATGACCTTCTTCATTGACCCCACAGCCAAAGTTCACACTTTCACACTTCCACATAAATTCACTCATAAAATGCCATGTCTCCACTCAAACTCTCCCCACTGCCTACACCTGAGCTTAGTTTAGAAGAGAGAAATGAGTTTGGTTCTTACTAAGAGGTCGAATGGTTACTGTAAGGTTGATAAAGAAGATCCAGAAGAGATAATTCATCGAAGAGCACAGTTTCTAATCAACAAAGTGTTGGAAAGAGCAGATTCCATGGGGAAACCTTCGTATCTGAGAATTAGAATTCGAAGGCTGAAGGTTAGATTTGGGAGGAGATTGAAGAGGCTGAAGAAGAGTGCAATGGGAAGTATTTCAACTCTCAAGATTGGTGTTTACAAGCAAGTTATTACACAGATCAGAAATTGCAAGTCGTTGTTTGGCCGGAAACAAACTAACTTTGCCAATTTTCCTGTTTTGTTATCATCTTGAAGAAAACTCACCATAGTTTTCATCAATCAAATCGTTGGAAACTTGATTACTTTTTCCTTCGAGCTTTAATTTTGTTAATGAGCTTTCTTATATGAATTAAAGAAATTTTTCTAAGCATTCACTTGGCTGCTGGTGTTAAGGAGCTTTCTTTAATTTTGGTGTTTTGAACGGTTTCTTTTCCTTTATTCCTTTTCCTTTTTTCTTCTCTCTTCCA

mRNA sequence

ATGAGTTTGGTTCTTACTAAGAGGTCGAATGGTTACTGTAAGGTTGATAAAGAAGATCCAGAAGAGATAATTCATCGAAGAGCACAGTTTCTAATCAACAAAGTGTTGGAAAGAGCAGATTCCATGGGGAAACCTTCGTATCTGAGAATTAGAATTCGAAGGCTGAAGGTTAGATTTGGGAGGAGATTGAAGAGGCTGAAGAAGAGTGCAATGGGAAGTATTTCAACTCTCAAGATTGGTGTTTACAAGCAAGTTATTACACAGATCAGAAATTGCAAGTCGTTGTTTGGCCGGAAACAAACTAACTTTGCCAATTTTCCTGTTTTGTTATCATCTTGA

Coding sequence (CDS)

ATGAGTTTGGTTCTTACTAAGAGGTCGAATGGTTACTGTAAGGTTGATAAAGAAGATCCAGAAGAGATAATTCATCGAAGAGCACAGTTTCTAATCAACAAAGTGTTGGAAAGAGCAGATTCCATGGGGAAACCTTCGTATCTGAGAATTAGAATTCGAAGGCTGAAGGTTAGATTTGGGAGGAGATTGAAGAGGCTGAAGAAGAGTGCAATGGGAAGTATTTCAACTCTCAAGATTGGTGTTTACAAGCAAGTTATTACACAGATCAGAAATTGCAAGTCGTTGTTTGGCCGGAAACAAACTAACTTTGCCAATTTTCCTGTTTTGTTATCATCTTGA

Protein sequence

MSLVLTKRSNGYCKVDKEDPEEIIHRRAQFLINKVLERADSMGKPSYLRIRIRRLKVRFGRRLKRLKKSAMGSISTLKIGVYKQVITQIRNCKSLFGRKQTNFANFPVLLSS*

Homology

[Close]

BLAST of CsaV3_6G049110 vs. NCBI nr
Match: KGN49119.1 (hypothetical protein Csa_003853 [Cucumis sativus])

HSP 1 Score: 219.9 bits (559), Expect = 1.1e-53
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MSLVLTKRSNGYCKVDKEDPEEIIHRRAQFLINKVLERADSMGKPSYLRIRIRRLKVRFG 60
           MSLVLTKRSNGYCKVDKEDPEEIIHRRAQFLINKVLERADSMGKPSYLRIRIRRLKVRFG
Sbjct: 1   MSLVLTKRSNGYCKVDKEDPEEIIHRRAQFLINKVLERADSMGKPSYLRIRIRRLKVRFG 60

Query: 61  RRLKRLKKSAMGSISTLKIGVYKQVITQIRNCKSLFGRKQTNFANFPVLLSS 113
           RRLKRLKKSAMGSISTLKIGVYKQVITQIRNCKSLFGRKQTNFANFPVLLSS
Sbjct: 61  RRLKRLKKSAMGSISTLKIGVYKQVITQIRNCKSLFGRKQTNFANFPVLLSS 112

[Close]

BLAST of CsaV3_6G049110 vs. NCBI nr
Match: XP_008439979.1 (PREDICTED: uncharacterized protein LOC103484604 [Cucumis melo] >TYK13053.1 uncharacterized protein E5676_scaffold255G006550 [Cucumis melo var. makuwa])

HSP 1 Score: 201.8 bits (512), Expect = 3.1e-48
Identity = 103/112 (91.96%), Postives = 106/112 (94.64%), Query Frame = 0


Query: 1   MSLVLTKRSNGYCKVDKEDPEEIIHRRAQFLINKVLERADSMGKPSYLRIRIRRLKVRFG 60
           MS VLTKR NGYCKVDKEDPEEII RRAQFLINKVLERADSMGKPSYLRIRIRRLKVRFG
Sbjct: 1   MSFVLTKRPNGYCKVDKEDPEEIIRRRAQFLINKVLERADSMGKPSYLRIRIRRLKVRFG 60

Query: 61  RRLKRLKKSAMGSISTLKIGVYKQVITQIRNCKSLFGRKQTNFANFPVLLSS 113
           +RLK+LKKSAM SISTLK+GVYKQVITQIRN KSLFGRKQT FANFPVLLSS
Sbjct: 61  KRLKKLKKSAMASISTLKVGVYKQVITQIRNYKSLFGRKQTKFANFPVLLSS 112

[Close]

BLAST of CsaV3_6G049110 vs. NCBI nr
Match: XP_038883675.1 (uncharacterized protein LOC120074584 [Benincasa hispida])

HSP 1 Score: 196.4 bits (498), Expect = 1.3e-46
Identity = 100/112 (89.29%), Postives = 105/112 (93.75%), Query Frame = 0


Query: 1   MSLVLTKRSNGYCKVDKEDPEEIIHRRAQFLINKVLERADSMGKPSYLRIRIRRLKVRFG 60
           MS VL +R NGY KVDKEDPEEIIHRRAQFLINKVLERADSMGKPSYLRIRIRRLKVRFG
Sbjct: 1   MSFVLIRRPNGYSKVDKEDPEEIIHRRAQFLINKVLERADSMGKPSYLRIRIRRLKVRFG 60

Query: 61  RRLKRLKKSAMGSISTLKIGVYKQVITQIRNCKSLFGRKQTNFANFPVLLSS 113
           RRLK+LKKSAM SISTLKIGVYKQVI+QIRNCKSLFG KQT+F NFP+LLSS
Sbjct: 61  RRLKKLKKSAMASISTLKIGVYKQVISQIRNCKSLFGPKQTHFPNFPLLLSS 112

[Close]

BLAST of CsaV3_6G049110 vs. NCBI nr
Match: XP_023003962.1 (uncharacterized protein LOC111497408 [Cucurbita maxima])

HSP 1 Score: 186.0 bits (471), Expect = 1.7e-43
Identity = 94/112 (83.93%), Postives = 100/112 (89.29%), Query Frame = 0


Query: 1   MSLVLTKRSNGYCKVDKEDPEEIIHRRAQFLINKVLERADSMGKPSYLRIRIRRLKVRFG 60
           MS VL K SNGY KVDKEDPEEIIHRRAQF+INKVLERADSMGK SYLRIRIRRL+VRFG
Sbjct: 1   MSFVLVKSSNGYSKVDKEDPEEIIHRRAQFIINKVLERADSMGKASYLRIRIRRLRVRFG 60

Query: 61  RRLKRLKKSAMGSISTLKIGVYKQVITQIRNCKSLFGRKQTNFANFPVLLSS 113
           RRLK+LKKSAM SI  +KI VYKQ+I QIRNCKSLFGRK+TNFAN P LLSS
Sbjct: 61  RRLKKLKKSAMASICNVKISVYKQIICQIRNCKSLFGRKETNFANLPPLLSS 112

[Close]

BLAST of CsaV3_6G049110 vs. NCBI nr
Match: XP_022142336.1 (uncharacterized protein LOC111012478 [Momordica charantia])

HSP 1 Score: 177.6 bits (449), Expect = 6.2e-41
Identity = 90/112 (80.36%), Postives = 97/112 (86.61%), Query Frame = 0


Query: 1   MSLVLTKRSNGYCKVDKEDPEEIIHRRAQFLINKVLERADSMGKPSYLRIRIRRLKVRFG 60
           MS +L +R NGY KVDKEDPEEIIHRRAQFLINKVLERA+SMGKPSYLRIRIRRLKVRFG
Sbjct: 1   MSFLLIRRPNGYSKVDKEDPEEIIHRRAQFLINKVLERAESMGKPSYLRIRIRRLKVRFG 60

Query: 61  RRLKRLKKSAMGSISTLKIGVYKQVITQIRNCKSLFGRKQTNFANFPVLLSS 113
           RRLK+LKKSA+ SIS  KIGVYKQVI Q+RNCKSLFGRK+   AN    LSS
Sbjct: 61  RRLKKLKKSALASISAAKIGVYKQVIGQLRNCKSLFGRKEATIANLSPFLSS 112

[Close]

BLAST of CsaV3_6G049110 vs. ExPASy TrEMBL
Match: A0A0A0KJX3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G514800 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 5.3e-54
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MSLVLTKRSNGYCKVDKEDPEEIIHRRAQFLINKVLERADSMGKPSYLRIRIRRLKVRFG 60
           MSLVLTKRSNGYCKVDKEDPEEIIHRRAQFLINKVLERADSMGKPSYLRIRIRRLKVRFG
Sbjct: 1   MSLVLTKRSNGYCKVDKEDPEEIIHRRAQFLINKVLERADSMGKPSYLRIRIRRLKVRFG 60

Query: 61  RRLKRLKKSAMGSISTLKIGVYKQVITQIRNCKSLFGRKQTNFANFPVLLSS 113
           RRLKRLKKSAMGSISTLKIGVYKQVITQIRNCKSLFGRKQTNFANFPVLLSS
Sbjct: 61  RRLKRLKKSAMGSISTLKIGVYKQVITQIRNCKSLFGRKQTNFANFPVLLSS 112

[Close]

BLAST of CsaV3_6G049110 vs. ExPASy TrEMBL
Match: A0A5D3CMA4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G006550 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 1.5e-48
Identity = 103/112 (91.96%), Postives = 106/112 (94.64%), Query Frame = 0


Query: 1   MSLVLTKRSNGYCKVDKEDPEEIIHRRAQFLINKVLERADSMGKPSYLRIRIRRLKVRFG 60
           MS VLTKR NGYCKVDKEDPEEII RRAQFLINKVLERADSMGKPSYLRIRIRRLKVRFG
Sbjct: 1   MSFVLTKRPNGYCKVDKEDPEEIIRRRAQFLINKVLERADSMGKPSYLRIRIRRLKVRFG 60

Query: 61  RRLKRLKKSAMGSISTLKIGVYKQVITQIRNCKSLFGRKQTNFANFPVLLSS 113
           +RLK+LKKSAM SISTLK+GVYKQVITQIRN KSLFGRKQT FANFPVLLSS
Sbjct: 61  KRLKKLKKSAMASISTLKVGVYKQVITQIRNYKSLFGRKQTKFANFPVLLSS 112

[Close]

BLAST of CsaV3_6G049110 vs. ExPASy TrEMBL
Match: A0A1S3B0N9 (uncharacterized protein LOC103484604 OS=Cucumis melo OX=3656 GN=LOC103484604 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 1.5e-48
Identity = 103/112 (91.96%), Postives = 106/112 (94.64%), Query Frame = 0


Query: 1   MSLVLTKRSNGYCKVDKEDPEEIIHRRAQFLINKVLERADSMGKPSYLRIRIRRLKVRFG 60
           MS VLTKR NGYCKVDKEDPEEII RRAQFLINKVLERADSMGKPSYLRIRIRRLKVRFG
Sbjct: 1   MSFVLTKRPNGYCKVDKEDPEEIIRRRAQFLINKVLERADSMGKPSYLRIRIRRLKVRFG 60

Query: 61  RRLKRLKKSAMGSISTLKIGVYKQVITQIRNCKSLFGRKQTNFANFPVLLSS 113
           +RLK+LKKSAM SISTLK+GVYKQVITQIRN KSLFGRKQT FANFPVLLSS
Sbjct: 61  KRLKKLKKSAMASISTLKVGVYKQVITQIRNYKSLFGRKQTKFANFPVLLSS 112

[Close]

BLAST of CsaV3_6G049110 vs. ExPASy TrEMBL
Match: A0A6J1KP23 (uncharacterized protein LOC111497408 OS=Cucurbita maxima OX=3661 GN=LOC111497408 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 8.5e-44
Identity = 94/112 (83.93%), Postives = 100/112 (89.29%), Query Frame = 0


Query: 1   MSLVLTKRSNGYCKVDKEDPEEIIHRRAQFLINKVLERADSMGKPSYLRIRIRRLKVRFG 60
           MS VL K SNGY KVDKEDPEEIIHRRAQF+INKVLERADSMGK SYLRIRIRRL+VRFG
Sbjct: 1   MSFVLVKSSNGYSKVDKEDPEEIIHRRAQFIINKVLERADSMGKASYLRIRIRRLRVRFG 60

Query: 61  RRLKRLKKSAMGSISTLKIGVYKQVITQIRNCKSLFGRKQTNFANFPVLLSS 113
           RRLK+LKKSAM SI  +KI VYKQ+I QIRNCKSLFGRK+TNFAN P LLSS
Sbjct: 61  RRLKKLKKSAMASICNVKISVYKQIICQIRNCKSLFGRKETNFANLPPLLSS 112

[Close]

BLAST of CsaV3_6G049110 vs. ExPASy TrEMBL
Match: A0A6J1CLW2 (uncharacterized protein LOC111012478 OS=Momordica charantia OX=3673 GN=LOC111012478 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 3.0e-41
Identity = 90/112 (80.36%), Postives = 97/112 (86.61%), Query Frame = 0


Query: 1   MSLVLTKRSNGYCKVDKEDPEEIIHRRAQFLINKVLERADSMGKPSYLRIRIRRLKVRFG 60
           MS +L +R NGY KVDKEDPEEIIHRRAQFLINKVLERA+SMGKPSYLRIRIRRLKVRFG
Sbjct: 1   MSFLLIRRPNGYSKVDKEDPEEIIHRRAQFLINKVLERAESMGKPSYLRIRIRRLKVRFG 60

Query: 61  RRLKRLKKSAMGSISTLKIGVYKQVITQIRNCKSLFGRKQTNFANFPVLLSS 113
           RRLK+LKKSA+ SIS  KIGVYKQVI Q+RNCKSLFGRK+   AN    LSS
Sbjct: 61  RRLKKLKKSALASISAAKIGVYKQVIGQLRNCKSLFGRKEATIANLSPFLSS 112

[Close]

BLAST of CsaV3_6G049110 vs. TAIR 10
Match: AT1G11655.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G21902.1); Has 22 Blast hits to 22 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 65.5 bits (158), Expect = 3.2e-11
Identity = 37/98 (37.76%), Postives = 61/98 (62.24%), Query Frame = 0


Query: 3  LVLTKRSNGYCKVDKEDPEEIIHRRAQFLINKVLERADSMGK----PSYLRIRIRRLKVR 62
          + L KR   Y K+DKEDPEE++ RRA+FLI K L+ AD + +     S++R+++  LKV+
Sbjct: 1  MTLFKRPCLYSKMDKEDPEEVLSRRAKFLIYKTLQEADLISRRDPHSSFIRLKLYLLKVK 60

Query: 63 FGRRLKRLKKSAMGSISTLKIGVYKQVITQIRNCKSLF 97
           G+RL +L++S + ++     G+ K     +R  K +F
Sbjct: 61 IGKRLAKLRRSVVSAVRF--GGIRKHSHNGVRALKKMF 96

[Close]

BLAST of CsaV3_6G049110 vs. TAIR 10
Match: AT4G04745.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G21902.1); Has 32 Blast hits to 32 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 63.9 bits (154), Expect = 9.3e-11
Identity = 34/78 (43.59%), Postives = 52/78 (66.67%), Query Frame = 0


Query: 1   MSLVLTKRSNGYCKVDKEDPEEIIHRRAQFLINKVLERADSMGKPSYLR---------IR 60
           M+L++      Y K++KEDP+E+IHRRAQFLI KVLERADS  +    R         IR
Sbjct: 26  MALMVKNSPYEYTKMEKEDPQELIHRRAQFLIQKVLERADSKTRQHQQRRRSSGPLIMIR 85

Query: 61  IRRLKVRFGRRLKRLKKS 70
           +  +++R G++L++L+K+
Sbjct: 86  VVGIRMRIGKKLRKLRKT 103

[Close]

BLAST of CsaV3_6G049110 vs. TAIR 10
Match: AT4G21902.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G04745.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 56.2 bits (134), Expect = 1.9e-08
Identity = 29/78 (37.18%), Postives = 52/78 (66.67%), Query Frame = 0


Query: 3  LVLTKRSNGYCKVDKEDPEEIIHRRAQFLINKVLERAD------SMGKPSYLRI---RIR 62
          + + K  N Y K++KED  EIIHRRAQFLI+K+L+RAD         + + +++   R+ 
Sbjct: 1  MAMMKNPNQYTKIEKEDLNEIIHRRAQFLIHKILQRADIETLRQQQKRNTTIKLFSFRVV 60

Query: 63 RLKVRFGRRLKRLKKSAM 72
           ++++ G++L++L+KS +
Sbjct: 61 GIRMKIGKKLRKLRKSCV 78

The following BLAST results are available for this feature:

BLAST of CsaV3_6G049110 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN49119.1	1.1e-53	100.00	hypothetical protein Csa_003853 [Cucumis sativus]	[more]
XP_008439979.1	3.1e-48	91.96	PREDICTED: uncharacterized protein LOC103484604 [Cucumis melo] >TYK13053.1 uncha...	[more]
XP_038883675.1	1.3e-46	89.29	uncharacterized protein LOC120074584 [Benincasa hispida]	[more]
XP_023003962.1	1.7e-43	83.93	uncharacterized protein LOC111497408 [Cucurbita maxima]	[more]
XP_022142336.1	6.2e-41	80.36	uncharacterized protein LOC111012478 [Momordica charantia]	[more]

BLAST of CsaV3_6G049110 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G049110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJX3	5.3e-54	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G514800 PE=4 SV=1	[more]
A0A5D3CMA4	1.5e-48	91.96	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B0N9	1.5e-48	91.96	uncharacterized protein LOC103484604 OS=Cucumis melo OX=3656 GN=LOC103484604 PE=...	[more]
A0A6J1KP23	8.5e-44	83.93	uncharacterized protein LOC111497408 OS=Cucurbita maxima OX=3661 GN=LOC111497408...	[more]
A0A6J1CLW2	3.0e-41	80.36	uncharacterized protein LOC111012478 OS=Momordica charantia OX=3673 GN=LOC111012...	[more]

BLAST of CsaV3_6G049110 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G11655.1	3.2e-11	37.76	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G04745.1	9.3e-11	43.59	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G21902.1	1.9e-08	37.18	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35687:SF1	OS07G0516700 PROTEIN	coord: 4..105
None	No IPR available	PANTHER	PTHR35687	OS07G0516700 PROTEIN	coord: 4..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G049110.1	CsaV3_6G049110.1	mRNA