CsaV3_6G048150 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G048150
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr6: 28298044 .. 28298253 (-)
RNA-Seq Expression	CsaV3_6G048150
Synteny	CsaV3_6G048150

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ACGATGGAGAAGCTTTATTCAGCAGGAAGTTCGCGTCACTGTTTGAACGCCGCCGGGCGGAGAATGGCCGCAGGCGGCGGCGGCGGTGCGGCAGTTCCGCTCGCGCATGGAGAAATTAGGCGACACAAGTTGAAAAGAAAGAGAGAGAGTTGTCTGCGATTGGCCTCCGAAACCACCAACAAAAAGAAGAGTAATCCAACGTCAGAGTGA

mRNA sequence

ACGATGGAGAAGCTTTATTCAGCAGGAAGTTCGCGTCACTGTTTGAACGCCGCCGGGCGGAGAATGGCCGCAGGCGGCGGCGGCGGTGCGGCAGTTCCGCTCGCGCATGGAGAAATTAGGCGACACAAGTTGAAAAGAAAGAGAGAGAGTTGTCTGCGATTGGCCTCCGAAACCACCAACAAAAAGAAGAGTAATCCAACGTCAGAGTGA

Coding sequence (CDS)

ACGATGGAGAAGCTTTATTCAGCAGGAAGTTCGCGTCACTGTTTGAACGCCGCCGGGCGGAGAATGGCCGCAGGCGGCGGCGGCGGTGCGGCAGTTCCGCTCGCGCATGGAGAAATTAGGCGACACAAGTTGAAAAGAAAGAGAGAGAGTTGTCTGCGATTGGCCTCCGAAACCACCAACAAAAAGAAGAGTAATCCAACGTCAGAGTGA

Protein sequence

TMEKLYSAGSSRHCLNAAGRRMAAGGGGGAAVPLAHGEIRRHKLKRKRESCLRLASETTNKKKSNPTSE*

Homology

[Close]

BLAST of CsaV3_6G048150 vs. NCBI nr
Match: KAE8647634.1 (hypothetical protein Csa_003657, partial [Cucumis sativus])

HSP 1 Score: 132.9 bits (333), Expect = 1.1e-27
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  TMEKLYSAGSSRHCLNAAGRRMAAGGGGGAAVPLAHGEIRRHKLKRKRESCLRLASETTN 60
          TMEKLYSAGSSRHCLNAAGRRMAAGGGGGAAVPLAHGEIRRHKLKRKRESCLRLASETTN
Sbjct: 1  TMEKLYSAGSSRHCLNAAGRRMAAGGGGGAAVPLAHGEIRRHKLKRKRESCLRLASETTN 60

Query: 61 KKKSNPTSE 70
          KKKSNPTSE
Sbjct: 61 KKKSNPTSE 69

[Close]

BLAST of CsaV3_6G048150 vs. ExPASy TrEMBL
Match: A0A0A0KJR3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G510910 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 5.3e-28
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  TMEKLYSAGSSRHCLNAAGRRMAAGGGGGAAVPLAHGEIRRHKLKRKRESCLRLASETTN 60
          TMEKLYSAGSSRHCLNAAGRRMAAGGGGGAAVPLAHGEIRRHKLKRKRESCLRLASETTN
Sbjct: 15 TMEKLYSAGSSRHCLNAAGRRMAAGGGGGAAVPLAHGEIRRHKLKRKRESCLRLASETTN 74

Query: 61 KKKSNPTSE 70
          KKKSNPTSE
Sbjct: 75 KKKSNPTSE 83

The following BLAST results are available for this feature:

BLAST of CsaV3_6G048150 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647634.1	1.1e-27	100.00	hypothetical protein Csa_003657, partial [Cucumis sativus]	[more]

BLAST of CsaV3_6G048150 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G048150 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJR3	5.3e-28	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G510910 PE=4 SV=1	[more]

BLAST of CsaV3_6G048150 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G048150.1	CsaV3_6G048150.1	mRNA