CsaV3_6G047300 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G047300
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionMitochondrial import inner membrane translocase
Locationchr6: 27918960 .. 27921468 (+)
RNA-Seq ExpressionCsaV3_6G047300
SyntenyCsaV3_6G047300
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAATCGGAATTCGGTTTCCAAATGCGTTAATATATCTAAGCTCTCCCCCCACATCAATGGAGGAAGACACCATCCTTCTTCTTTTGTTACCAGCCACGGAGCTCAGCCATGAAAGACGACTACGAGGTATGCGATTTTCTCTCTTCTAAGCCTCAAATTTCAACAACGCATATGTATCAACTCCCTTCCCTCGCAGTTCTAGCTATCAATTATGCGATATTGCGCTAAAATCTAGTTGCTCAAGTCATCCCTCTCCCTCTCCCTCTCCTGTTCGATTTCGTAGTTGCAGTCATCTTAAGGATATTTTCATGGTTAGATTAGATATATCAACTTTGTTCTACAACATTCGTTGCCTGTTGGAGTTTATGTCTCGAGAATTTGGTGGATTTGGTATTTGGATTAAAACTTAAAGCCTGAGCTGGTAGATTAGTTATATATGTTGAACCTTTTTCAGTTTTCCTGAGGAGTTGATACAAGTCGATATTCTTTATTTCCTTTTTCAAGACTCGGAATGAAATGGTCATGTCCTTGCTAAGGAAATCGTCAATTGCTGTTTTTCTATAGAAGTTTTCGTATCTTTGGATTGGTGATCTTGAGAAACCATATCTAGTTCATGTAGTGGTGATTAATTGGGTTAGGAAATAGCATATGATATTTTCCTTTTGAATTTATTTCACTTCCAAATGTTCTTTTCTGATTCCTCATATATGTAAATTGCATTTACTAGTTTTGATTCCACATCGATGTCTAATTTGTGTATTGTATTCCTAATTTTGCTAACTTGATTCCCCATGGATACCTTGTTTGTGTACCTGTAGTTTCTTGTTTTGCTACTTTGATTCTGCCTGTATTTGTTAGTTTCTACAGTTGCATTTAGATTCTCCATTCCTTTTTCGGCCTCCAAATTCTTGAAATTCTGTTCGTGCACAGAGGGCGTAGTAGGATTTAAGTTTTGTAGGATGCAGTACGTCATGAATCACAAGGCAAGATAAATGTATATCTTGTTTTGGACCTATCAGCAGCAACCTTTCATCCATAAGAACAGGATCTTTACTGGCAGTAGGTCCCTGGTGTTATGTCTAAGATTGTTTCCAGTCCTACCTGAAGTGTTCATGTGCCATCACGAGTTTTAGATAGGTTTCCTTGCCATCTATGTTTTCTACCTTTTGTGATGTCATTCTGATTGTCAAGATGACAAATTTGCAGACCGAAGAGAAAAAGCAAGCTGCTGCTGATGTAATGTTTCAATATTCAAAATTTGTGATGGCCTGTATTGGAAATCAAGTAAGACCATGTGACTTGAGATTTCACTTGATGAAGGTAATTTTTTTTCCTTGGATTTCTCATCTATAATTGTAGAAATCGTTTTCTTTTGATTGAGTCTATCTATAATATTATATGATGGAATAACTTTAATATTTCCAATTGCGTCTGTTAAGTCACCGATCTGTGATTCAACATGGTACTAGGGTAGGAGGCATGTATTCAAATCGTCATTTCCTCTTCAATTATTATTGATTTCCACTTATTTGGTATTTTGTTAGAGTGATGATATAAGATTAAATTTACCTTCACCCATTAGCGAAGAAGGTCCTATGTTCAAACTCTTGTAATGTTACATCTTTCTTCTTCATTAATATTGATTTCTACTTGTTCTGTCTTCTATAAATCTTAAAGCCTAAAAGTGAGAGGGAGTGTTGTTATGGTACTGATTTAAATCTTATATAACCAATCAGCTTAATTTTCTCGGTTACTTGATGATTTAACAGTGTTTGTATGTAATTGTGAATAACAGTCATTTTTATCAAAAGCTTCACCCGCTCACTTTGTTATCCCGTAATTCCTTTGCACTTAAACATATATATTTTTATCTCATAAAAACTATGGGACTTAAACATTCCAATCAATCACCACCTATGTAGAATCATGGGAGTCTTCTCTTTTACACCTGTTAACAAATTAAAATATGAAAGATCATGGTTGTTATTTTTTTCTATGTTCAGGAGATTTCTGGAATGCCAACTTCTTTGAAGAGGGAATCATCCCAACGAGCAGCTTCTCCGGATGCCATGGGCGAATCGTCAAGCTCAGGTACAGCTAGACTTGATAAAGTAGATAGCTTTAGAGTGCTGTAGAGTTCGACGACTCCCAGTTGAAGGCCTTCACTACATATGGAATTTACCTGCCTTCTCTAACCTTTTCTCTTATTTTAACTCTCATTAATTTGAAACTCCGTTTGCTCCTTTACCAAAAGATGGAAACTTTCACTATTTACCTGTATTATTTCCTTGTAAGTTTTGTAAGACGATGGGTGCATAGGCATATTATGATGGTTATGGACTTGTGAGTTGTAGGAAATAGTCTTGGGCCCGGGCCCAACCATGATTTCAAATGGGCTAACTTTTTATCTGTTATTTTTTAGCAACA

mRNA sequence

ATGTTTTCTACCTTTTGTGATGTCATTCTGATTGTCAAGATGACAAATTTGCAGACCGAAGAGAAAAAGCAAGCTGCTGCTGATGTAATGTTTCAATATTCAAAATTTGTGATGGCCTGTATTGGAAATCAAGTAAGACCATGTGACTTGAGATTTCACTTGATGAAGGAGATTTCTGGAATGCCAACTTCTTTGAAGAGGGAATCATCCCAACGAGCAGCTTCTCCGGATGCCATGGGCGAATCGTCAAGCTCAGGTACAGCTAGACTTGATAAAGTAGATAGCTTTAGAGTGCTGTAG

Coding sequence (CDS)

ATGTTTTCTACCTTTTGTGATGTCATTCTGATTGTCAAGATGACAAATTTGCAGACCGAAGAGAAAAAGCAAGCTGCTGCTGATGTAATGTTTCAATATTCAAAATTTGTGATGGCCTGTATTGGAAATCAAGTAAGACCATGTGACTTGAGATTTCACTTGATGAAGGAGATTTCTGGAATGCCAACTTCTTTGAAGAGGGAATCATCCCAACGAGCAGCTTCTCCGGATGCCATGGGCGAATCGTCAAGCTCAGGTACAGCTAGACTTGATAAAGTAGATAGCTTTAGAGTGCTGTAG

Protein sequence

MFSTFCDVILIVKMTNLQTEEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGMPTSLKRESSQRAASPDAMGESSSSGTARLDKVDSFRVL*
Homology
[Close]
BLAST of CsaV3_6G047300 vs. NCBI nr
Match: KAE8647611.1 (hypothetical protein Csa_004172 [Cucumis sativus])

HSP 1 Score: 194.5 bits (493), Expect = 4.3e-46
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0 

Query: 1   MFSTFCDVILIVKMTNLQTEEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISG 60
           MFSTFCDVILIVKMTNLQTEEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISG
Sbjct: 1   MFSTFCDVILIVKMTNLQTEEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISG 60

Query: 61  MPTSLKRESSQRAASPDAMGESSSSGTARLDKVDSFRVL 100
           MPTSLKRESSQRAASPDAMGESSSSGTARLDKVDSFRVL
Sbjct: 61  MPTSLKRESSQRAASPDAMGESSSSGTARLDKVDSFRVL 99

[Close]
BLAST of CsaV3_6G047300 vs. NCBI nr
Match: XP_004134854.1 (uncharacterized protein LOC101220806 [Cucumis sativus])

HSP 1 Score: 161.4 bits (407), Expect = 4.1e-36
Identity = 81/82 (98.78%), Postives = 82/82 (100.00%), Query Frame = 0 

Query: 18  QTEEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGMPTSLKRESSQRAASPD 77
           +TEEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGMPTSLKRESSQRAASPD
Sbjct: 6   ETEEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGMPTSLKRESSQRAASPD 65

Query: 78  AMGESSSSGTARLDKVDSFRVL 100
           AMGESSSSGTARLDKVDSFRVL
Sbjct: 66  AMGESSSSGTARLDKVDSFRVL 87

[Close]
BLAST of CsaV3_6G047300 vs. NCBI nr
Match: XP_008440839.1 (PREDICTED: uncharacterized protein LOC103485143 [Cucumis melo] >KAA0025661.1 uncharacterized protein E6C27_scaffold253G001540 [Cucumis melo var. makuwa] >TYK12534.1 uncharacterized protein E5676_scaffold255G001150 [Cucumis melo var. makuwa])

HSP 1 Score: 159.8 bits (403), Expect = 1.2e-35
Identity = 80/82 (97.56%), Postives = 82/82 (100.00%), Query Frame = 0 

Query: 18  QTEEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGMPTSLKRESSQRAASPD 77
           +TEEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISG+PTSLKRESSQRAASPD
Sbjct: 6   ETEEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQRAASPD 65

Query: 78  AMGESSSSGTARLDKVDSFRVL 100
           AMGESSSSGTARLDKVDSFRVL
Sbjct: 66  AMGESSSSGTARLDKVDSFRVL 87

[Close]
BLAST of CsaV3_6G047300 vs. NCBI nr
Match: XP_038882825.1 (uncharacterized protein LOC120073967 [Benincasa hispida])

HSP 1 Score: 158.3 bits (399), Expect = 3.4e-35
Identity = 79/82 (96.34%), Postives = 81/82 (98.78%), Query Frame = 0 

Query: 18  QTEEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGMPTSLKRESSQRAASPD 77
           +TEEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISG+PTSLKRESSQRAASPD
Sbjct: 6   ETEEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQRAASPD 65

Query: 78  AMGESSSSGTARLDKVDSFRVL 100
           AMGESSSSGTARLDKVDSFR L
Sbjct: 66  AMGESSSSGTARLDKVDSFRAL 87

[Close]
BLAST of CsaV3_6G047300 vs. NCBI nr
Match: KAE8010640.1 (hypothetical protein FH972_006995 [Carpinus fangiana])

HSP 1 Score: 157.9 bits (398), Expect = 4.5e-35
Identity = 79/85 (92.94%), Postives = 82/85 (96.47%), Query Frame = 0 

Query: 15  TNLQTEEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGMPTSLKRESSQRAA 74
           T LQT+EKKQAAADV+FQYSKFVMACIGNQVRPCDLR HLMKEISGMPTSLK+ESSQRAA
Sbjct: 5   TKLQTDEKKQAAADVLFQYSKFVMACIGNQVRPCDLRLHLMKEISGMPTSLKKESSQRAA 64

Query: 75  SPDAMGESSSSGTARLDKVDSFRVL 100
           SPDAMGESSSSGTARLDK DSFRVL
Sbjct: 65  SPDAMGESSSSGTARLDKPDSFRVL 89

[Close]
BLAST of CsaV3_6G047300 vs. ExPASy TrEMBL
Match: A0A0A0KHB0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G507080 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 2.0e-36
Identity = 81/82 (98.78%), Postives = 82/82 (100.00%), Query Frame = 0 

Query: 18  QTEEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGMPTSLKRESSQRAASPD 77
           +TEEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGMPTSLKRESSQRAASPD
Sbjct: 6   ETEEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGMPTSLKRESSQRAASPD 65

Query: 78  AMGESSSSGTARLDKVDSFRVL 100
           AMGESSSSGTARLDKVDSFRVL
Sbjct: 66  AMGESSSSGTARLDKVDSFRVL 87

[Close]
BLAST of CsaV3_6G047300 vs. ExPASy TrEMBL
Match: A0A5A7SN38 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G001150 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 5.7e-36
Identity = 80/82 (97.56%), Postives = 82/82 (100.00%), Query Frame = 0 

Query: 18  QTEEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGMPTSLKRESSQRAASPD 77
           +TEEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISG+PTSLKRESSQRAASPD
Sbjct: 6   ETEEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQRAASPD 65

Query: 78  AMGESSSSGTARLDKVDSFRVL 100
           AMGESSSSGTARLDKVDSFRVL
Sbjct: 66  AMGESSSSGTARLDKVDSFRVL 87

[Close]
BLAST of CsaV3_6G047300 vs. ExPASy TrEMBL
Match: A0A1S3B238 (uncharacterized protein LOC103485143 OS=Cucumis melo OX=3656 GN=LOC103485143 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 5.7e-36
Identity = 80/82 (97.56%), Postives = 82/82 (100.00%), Query Frame = 0 

Query: 18  QTEEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGMPTSLKRESSQRAASPD 77
           +TEEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISG+PTSLKRESSQRAASPD
Sbjct: 6   ETEEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGIPTSLKRESSQRAASPD 65

Query: 78  AMGESSSSGTARLDKVDSFRVL 100
           AMGESSSSGTARLDKVDSFRVL
Sbjct: 66  AMGESSSSGTARLDKVDSFRVL 87

[Close]
BLAST of CsaV3_6G047300 vs. ExPASy TrEMBL
Match: A0A5N6QWD1 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_006995 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 2.2e-35
Identity = 79/85 (92.94%), Postives = 82/85 (96.47%), Query Frame = 0 

Query: 15  TNLQTEEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGMPTSLKRESSQRAA 74
           T LQT+EKKQAAADV+FQYSKFVMACIGNQVRPCDLR HLMKEISGMPTSLK+ESSQRAA
Sbjct: 5   TKLQTDEKKQAAADVLFQYSKFVMACIGNQVRPCDLRLHLMKEISGMPTSLKKESSQRAA 64

Query: 75  SPDAMGESSSSGTARLDKVDSFRVL 100
           SPDAMGESSSSGTARLDK DSFRVL
Sbjct: 65  SPDAMGESSSSGTARLDKPDSFRVL 89

[Close]
BLAST of CsaV3_6G047300 vs. ExPASy TrEMBL
Match: A0A6J1BUW3 (uncharacterized protein LOC111005574 OS=Momordica charantia OX=3673 GN=LOC111005574 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 2.8e-35
Identity = 78/82 (95.12%), Postives = 81/82 (98.78%), Query Frame = 0 

Query: 18  QTEEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGMPTSLKRESSQRAASPD 77
           +TEEKKQAAADV+FQYSKFVMACIGNQVRPCDLRFHLMKEISG+PTSLKRESSQRAASPD
Sbjct: 6   ETEEKKQAAADVLFQYSKFVMACIGNQVRPCDLRFHLMKEISGLPTSLKRESSQRAASPD 65

Query: 78  AMGESSSSGTARLDKVDSFRVL 100
           AMGESSSSGTARLDKVDSFR L
Sbjct: 66  AMGESSSSGTARLDKVDSFRAL 87

[Close]
BLAST of CsaV3_6G047300 vs. TAIR 10
Match: AT4G35980.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 127.5 bits (319), Expect = 6.1e-30
Identity = 62/82 (75.61%), Postives = 68/82 (82.93%), Query Frame = 0 

Query: 18  QTEEKKQAAADVMFQYSKFVMACIGNQVRPCDLRFHLMKEISGMPTSLKRESSQRAASPD 77
           + +E+KQAAADV+F YSKF MACIGN  RP D+R HLMKEISGMPTSLK   S RAASPD
Sbjct: 6   EVDEQKQAAADVLFSYSKFAMACIGNHTRPTDMRLHLMKEISGMPTSLKGRDSSRAASPD 65

Query: 78  AMGESSSSGTARLDKVDSFRVL 100
            +GESSSSGTARLDK DSFR L
Sbjct: 66  PLGESSSSGTARLDKTDSFRAL 87

The following BLAST results are available for this feature:
BLAST of CsaV3_6G047300 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8647611.14.3e-46100.00hypothetical protein Csa_004172 [Cucumis sativus][more]
XP_004134854.14.1e-3698.78uncharacterized protein LOC101220806 [Cucumis sativus][more]
XP_008440839.11.2e-3597.56PREDICTED: uncharacterized protein LOC103485143 [Cucumis melo] >KAA0025661.1 unc... [more]
XP_038882825.13.4e-3596.34uncharacterized protein LOC120073967 [Benincasa hispida][more]
KAE8010640.14.5e-3592.94hypothetical protein FH972_006995 [Carpinus fangiana][more]
BLAST of CsaV3_6G047300 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G047300 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KHB02.0e-3698.78Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G507080 PE=4 SV=1[more]
A0A5A7SN385.7e-3697.56Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3B2385.7e-3697.56uncharacterized protein LOC103485143 OS=Cucumis melo OX=3656 GN=LOC103485143 PE=... [more]
A0A5N6QWD12.2e-3592.94Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_006995 PE=4 SV=1[more]
A0A6J1BUW32.8e-3595.12uncharacterized protein LOC111005574 OS=Momordica charantia OX=3673 GN=LOC111005... [more]
BLAST of CsaV3_6G047300 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G35980.16.1e-3075.61unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 62..99
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 63..90
NoneNo IPR availablePANTHERPTHR48210FAMILY NOT NAMEDcoord: 18..98

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G047300.1CsaV3_6G047300.1mRNA