CsaV3_6G046830 (gene) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAATTGATCGACCTAAATTTTGCTCCCAATTACCTTTTTCTGTCATCTTTATCGAATCATAATTCGAATTGTCTTCGCCGATTAAGGCCAGAGTATGTGCGGCCATTTCTTCCCTGGGCTATGAGACGAGTCCCTACCAAAATAATTCCCAATTTCCAATCGTCAAGAATTTACCCTAATTCGATCATGGCTAGCGAGGGAACCAGAGAAATGCAATCATCAGTTGATTCGAAGAAGAAAGGCGTGGAGGAGGAGAAAGCAGAGAAAGAGAAAGAGAAAGAGGAGATGGTGAAATTGCCACCGCCGCCGGAGAAGCCGTTGCCGGGGGATTGTTGTGGGAGTGGATGTGTTCGATGTGTGTGGGACGTGTATTACGAAGAGCTTGAAGATTACAACAAGCTTTGCGAGAAAGGTTCGGCGCCCCCCAATTGTTGA ATGAAATTGATCGACCTAAATTTTGCTCCCAATTACCTTTTTCTGTCATCTTTATCGAATCATAATTCGAATTGTCTTCGCCGATTAAGGCCAGAGTATGTGCGGCCATTTCTTCCCTGGGCTATGAGACGAGTCCCTACCAAAATAATTCCCAATTTCCAATCGTCAAGAATTTACCCTAATTCGATCATGGCTAGCGAGGGAACCAGAGAAATGCAATCATCAGTTGATTCGAAGAAGAAAGGCGTGGAGGAGGAGAAAGCAGAGAAAGAGAAAGAGAAAGAGGAGATGGTGAAATTGCCACCGCCGCCGGAGAAGCCGTTGCCGGGGGATTGTTGTGGGAGTGGATGTGTTCGATGTGTGTGGGACGTGTATTACGAAGAGCTTGAAGATTACAACAAGCTTTGCGAGAAAGGTTCGGCGCCCCCCAATTGTTGA ATGAAATTGATCGACCTAAATTTTGCTCCCAATTACCTTTTTCTGTCATCTTTATCGAATCATAATTCGAATTGTCTTCGCCGATTAAGGCCAGAGTATGTGCGGCCATTTCTTCCCTGGGCTATGAGACGAGTCCCTACCAAAATAATTCCCAATTTCCAATCGTCAAGAATTTACCCTAATTCGATCATGGCTAGCGAGGGAACCAGAGAAATGCAATCATCAGTTGATTCGAAGAAGAAAGGCGTGGAGGAGGAGAAAGCAGAGAAAGAGAAAGAGAAAGAGGAGATGGTGAAATTGCCACCGCCGCCGGAGAAGCCGTTGCCGGGGGATTGTTGTGGGAGTGGATGTGTTCGATGTGTGTGGGACGTGTATTACGAAGAGCTTGAAGATTACAACAAGCTTTGCGAGAAAGGTTCGGCGCCCCCCAATTGTTGA MKLIDLNFAPNYLFLSSLSNHNSNCLRRLRPEYVRPFLPWAMRRVPTKIIPNFQSSRIYPNSIMASEGTREMQSSVDSKKKGVEEEKAEKEKEKEEMVKLPPPPEKPLPGDCCGSGCVRCVWDVYYEELEDYNKLCEKGSAPPNC* Homology
BLAST of CsaV3_6G046830 vs. NCBI nr
Match: KAE8647601.1 (hypothetical protein Csa_004062 [Cucumis sativus]) HSP 1 Score: 302.8 bits (774), Expect = 1.7e-78 Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0
BLAST of CsaV3_6G046830 vs. NCBI nr
Match: XP_038881411.1 (uncharacterized protein LOC120072947 [Benincasa hispida]) HSP 1 Score: 236.1 bits (601), Expect = 1.9e-58 Identity = 115/138 (83.33%), Postives = 123/138 (89.13%), Query Frame = 0
BLAST of CsaV3_6G046830 vs. NCBI nr
Match: XP_023518260.1 (uncharacterized protein LOC111781791 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 199.9 bits (507), Expect = 1.5e-47 Identity = 102/141 (72.34%), Postives = 116/141 (82.27%), Query Frame = 0
BLAST of CsaV3_6G046830 vs. NCBI nr
Match: KAG6594792.1 (hypothetical protein SDJN03_11345, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026759.1 SPCP31B10.02, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 195.7 bits (496), Expect = 2.8e-46 Identity = 100/141 (70.92%), Postives = 115/141 (81.56%), Query Frame = 0
BLAST of CsaV3_6G046830 vs. NCBI nr
Match: XP_023003942.1 (uncharacterized protein LOC111497385 [Cucurbita maxima]) HSP 1 Score: 194.1 bits (492), Expect = 8.3e-46 Identity = 100/141 (70.92%), Postives = 112/141 (79.43%), Query Frame = 0
BLAST of CsaV3_6G046830 vs. ExPASy Swiss-Prot
Match: Q9USH2 (UPF0651 protein P31B10.02, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPCP31B10.02 PE=3 SV=1) HSP 1 Score: 57.0 bits (136), Expect = 2.1e-07 Identity = 22/41 (53.66%), Postives = 31/41 (75.61%), Query Frame = 0
BLAST of CsaV3_6G046830 vs. ExPASy Swiss-Prot
Match: B1AS42 (NADH-cytochrome b5 reductase-like OS=Mus musculus OX=10090 GN=Cyb5rl PE=2 SV=1) HSP 1 Score: 49.7 bits (117), Expect = 3.3e-05 Identity = 22/43 (51.16%), Postives = 29/43 (67.44%), Query Frame = 0
BLAST of CsaV3_6G046830 vs. ExPASy Swiss-Prot
Match: Q02873 (UPF0651 protein YPL107W, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=YPL107W PE=1 SV=1) HSP 1 Score: 45.8 bits (107), Expect = 4.8e-04 Identity = 17/35 (48.57%), Postives = 26/35 (74.29%), Query Frame = 0
BLAST of CsaV3_6G046830 vs. ExPASy TrEMBL
Match: A0A6J1KP06 (uncharacterized protein LOC111497385 OS=Cucurbita maxima OX=3661 GN=LOC111497385 PE=4 SV=1) HSP 1 Score: 194.1 bits (492), Expect = 4.0e-46 Identity = 100/141 (70.92%), Postives = 112/141 (79.43%), Query Frame = 0
BLAST of CsaV3_6G046830 vs. ExPASy TrEMBL
Match: A0A6J1HE87 (uncharacterized protein LOC111463382 OS=Cucurbita moschata OX=3662 GN=LOC111463382 PE=4 SV=1) HSP 1 Score: 193.7 bits (491), Expect = 5.2e-46 Identity = 100/141 (70.92%), Postives = 113/141 (80.14%), Query Frame = 0
BLAST of CsaV3_6G046830 vs. ExPASy TrEMBL
Match: A0A6J1BUD5 (uncharacterized protein LOC111005446 OS=Momordica charantia OX=3673 GN=LOC111005446 PE=4 SV=1) HSP 1 Score: 187.6 bits (475), Expect = 3.8e-44 Identity = 102/145 (70.34%), Postives = 113/145 (77.93%), Query Frame = 0
BLAST of CsaV3_6G046830 vs. ExPASy TrEMBL
Match: A0A0A0KKK8 (Glutaredoxin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G504670 PE=3 SV=1) HSP 1 Score: 160.2 bits (404), Expect = 6.4e-36 Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0
BLAST of CsaV3_6G046830 vs. ExPASy TrEMBL
Match: A0A5D3CL09 (UPF0651 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G001550 PE=4 SV=1) HSP 1 Score: 154.8 bits (390), Expect = 2.7e-34 Identity = 75/85 (88.24%), Postives = 78/85 (91.76%), Query Frame = 0
BLAST of CsaV3_6G046830 vs. TAIR 10
Match: AT5G17280.1 (CONTAINS InterPro DOMAIN/s: Oxidoreductase-like, N-terminal (InterPro:IPR019180); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 89.0 bits (219), Expect = 3.5e-18 Identity = 49/96 (51.04%), Postives = 62/96 (64.58%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
|