CsaV3_6G045190 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G045190
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	RING-type domain-containing protein
Location	chr6: 26757434 .. 26758729 (-)
RNA-Seq Expression	CsaV3_6G045190
Synteny	CsaV3_6G045190

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCATTTTTAATATATATATTTAAAAAGAGTAAAATGGTTTGGTAGTAATTGAGAGTTACCAGTAAGTTAGTTAGTATGACAAAGTAAGAAATGAGTTGATTGATGGTATTAGATGATATATGAAAACTAAGGGGATGGAGGTATAATTGAAGGTTAGAAGCACAGCCCACAGAAGTCAGTTTGTTGATGGTTTGGGGCATCGTTTGTCACGTGCCACCACTGCCATTACGACAAACGTGCCACACTCCACCTCCCTCTACCCTCGCACTTGCATGGCCCCTTCTACAAAACCTAAATTTTCTTAACTCTTCTGTTCCTTAACCTAACCATTATTATTATGAAGCTCCCTTTTAGTTTTACTCCCAATCTTCACTCTCTTTCTTTACTAATAATAATTCTCTTACACCCATTCTTCACCGTCCAAGCCCAACAATCCCCCTCCCAGTCCCAGTCCCACCTTCACTATTTGAAATTAAGCCGCCCCTTAACGGTGACCGTTCTCCTTCTTCTCTTCATTTTCTTCATCGTCCTCTTTTTCTCCGTTTACATCCGCCACTTTTTGGAGTTGAACGCGGCCTCAGACGCCGTGCTTCGGTCCCTGGAACGCGTGGACCGGTTTGGGCCATCTCACGGATTGAAAGCGGCAGAGATTGGTGCGTTTCCTCTGGTGGCCCACTCAGCAATAAAGGAAATGAAAATGGGGAAGTGGTCCTTGGAATGTGCCGTTTGCTTGGCTGAATTCCAACACTACGAAACCCTACGTTTGTTGCCTAAATGTGGTCACGTTTTTCATCCCCCTTGCATCGACGCTTGGCTGGCCTCTTGCGCCACCTGCCCCATTTGTAGGGCTCAACTCGCCGCCGGGGAAAATTTCTCATCCGAATTCGTGGCCATCGATGTTGTTGATCATAATAATGGGGATGTGGTTCATAACTGAACTACTTTGAAGTTGGATAGGATACGACGTGTCCTTTTTCGTTATATTGGAAATGGAAACAAATTAAATTGTGCCTGTATTAACAAAGTTTAATTCTTTTTATTTTGTATAAATGTGGTTGCTTTACTTTTCATTATTGTCTAATTTAATTGGGATTGTTTTATAATTAATACCACATGGCCACCTGATACTACCCCTCAACTGAATCATACGTTCATTAATTAAATTTTGGAATATTTGCAATCCCCTATCAACATACCTAGAAAAATGCTACAAATTAAGGCTTCAAACAATAGTATTAAAATTTTCTAAATATAGTAAAATTTATTCATAAATACAATATAATTTTCTATTCATA

mRNA sequence

ATGAAGCTCCCTTTTAGTTTTACTCCCAATCTTCACTCTCTTTCTTTACTAATAATAATTCTCTTACACCCATTCTTCACCGTCCAAGCCCAACAATCCCCCTCCCAGTCCCAGTCCCACCTTCACTATTTGAAATTAAGCCGCCCCTTAACGGTGACCGTTCTCCTTCTTCTCTTCATTTTCTTCATCGTCCTCTTTTTCTCCGTTTACATCCGCCACTTTTTGGAGTTGAACGCGGCCTCAGACGCCGTGCTTCGGTCCCTGGAACGCGTGGACCGGTTTGGGCCATCTCACGGATTGAAAGCGGCAGAGATTGGTGCGTTTCCTCTGGTGGCCCACTCAGCAATAAAGGAAATGAAAATGGGGAAGTGGTCCTTGGAATGTGCCGTTTGCTTGGCTGAATTCCAACACTACGAAACCCTACGTTTGTTGCCTAAATGTGGTCACGTTTTTCATCCCCCTTGCATCGACGCTTGGCTGGCCTCTTGCGCCACCTGCCCCATTTGTAGGGCTCAACTCGCCGCCGGGGAAAATTTCTCATCCGAATTCGTGGCCATCGATGTTGTTGATCATAATAATGGGGATGTGGTTCATAACTGA

Coding sequence (CDS)

ATGAAGCTCCCTTTTAGTTTTACTCCCAATCTTCACTCTCTTTCTTTACTAATAATAATTCTCTTACACCCATTCTTCACCGTCCAAGCCCAACAATCCCCCTCCCAGTCCCAGTCCCACCTTCACTATTTGAAATTAAGCCGCCCCTTAACGGTGACCGTTCTCCTTCTTCTCTTCATTTTCTTCATCGTCCTCTTTTTCTCCGTTTACATCCGCCACTTTTTGGAGTTGAACGCGGCCTCAGACGCCGTGCTTCGGTCCCTGGAACGCGTGGACCGGTTTGGGCCATCTCACGGATTGAAAGCGGCAGAGATTGGTGCGTTTCCTCTGGTGGCCCACTCAGCAATAAAGGAAATGAAAATGGGGAAGTGGTCCTTGGAATGTGCCGTTTGCTTGGCTGAATTCCAACACTACGAAACCCTACGTTTGTTGCCTAAATGTGGTCACGTTTTTCATCCCCCTTGCATCGACGCTTGGCTGGCCTCTTGCGCCACCTGCCCCATTTGTAGGGCTCAACTCGCCGCCGGGGAAAATTTCTCATCCGAATTCGTGGCCATCGATGTTGTTGATCATAATAATGGGGATGTGGTTCATAACTGA

Protein sequence

MKLPFSFTPNLHSLSLLIIILLHPFFTVQAQQSPSQSQSHLHYLKLSRPLTVTVLLLLFIFFIVLFFSVYIRHFLELNAASDAVLRSLERVDRFGPSHGLKAAEIGAFPLVAHSAIKEMKMGKWSLECAVCLAEFQHYETLRLLPKCGHVFHPPCIDAWLASCATCPICRAQLAAGENFSSEFVAIDVVDHNNGDVVHN*

Homology

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BLAST of CsaV3_6G045190 vs. NCBI nr
Match: KGN48724.1 (hypothetical protein Csa_004396 [Cucumis sativus])

HSP 1 Score: 397.5 bits (1020), Expect = 6.8e-107
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 0


Query: 1   MKLPFSFTPNLHSLSLLIIILLHPFFTVQAQQSPSQSQSHLHYLKLSRPLTVTVLLLLFI 60
           MKLPFSFTPNLHSLSLLIIILLHPFFTVQAQQSPSQSQSHLHYLKLSRPLTVTVLLLLFI
Sbjct: 1   MKLPFSFTPNLHSLSLLIIILLHPFFTVQAQQSPSQSQSHLHYLKLSRPLTVTVLLLLFI 60

Query: 61  FFIVLFFSVYIRHFLELNAASDAVLRSLERVDRFGPSHGLKAAEIGAFPLVAHSAIKEMK 120
           FFIVLFFSVYIRHFLELNAASDAVLRSLERVDRFGPSHGLKAAEIGAFPLVAHSAIKEMK
Sbjct: 61  FFIVLFFSVYIRHFLELNAASDAVLRSLERVDRFGPSHGLKAAEIGAFPLVAHSAIKEMK 120

Query: 121 MGKWSLECAVCLAEFQHYETLRLLPKCGHVFHPPCIDAWLASCATCPICRAQLAAGENFS 180
           MGKWSLECAVCLAEFQHYETLRLLPKCGHVFHPPCIDAWLASCATCPICRAQLAAGENFS
Sbjct: 121 MGKWSLECAVCLAEFQHYETLRLLPKCGHVFHPPCIDAWLASCATCPICRAQLAAGENFS 180

Query: 181 SEFVAIDVVDHNNGDVVHN 200
           SEFVAIDVVDHNNGDVVHN
Sbjct: 181 SEFVAIDVVDHNNGDVVHN 199

[Close]

BLAST of CsaV3_6G045190 vs. NCBI nr
Match: KAA0036326.1 (E3 ubiquitin-protein ligase ATL31-like [Cucumis melo var. makuwa] >TYK12720.1 E3 ubiquitin-protein ligase ATL31-like [Cucumis melo var. makuwa])

HSP 1 Score: 234.6 bits (597), Expect = 7.6e-58
Identity = 114/126 (90.48%), Postives = 118/126 (93.65%), Query Frame = 0


Query: 74  FLELNAASDAVLRSLERVDRFGPSHGLKAAEIGAFPLVAHSAIKEMKMGKWSLECAVCLA 133
           ++ELNAASDAVLRSL R+DRFGPSHGLK AEI AFPLVAHSAIKEMKMGKWSLECAVCLA
Sbjct: 10  WMELNAASDAVLRSLARLDRFGPSHGLKPAEILAFPLVAHSAIKEMKMGKWSLECAVCLA 69

Query: 134 EFQHYETLRLLPKCGHVFHPPCIDAWLASCATCPICRAQLAAGENFSSEFVAIDVVDHNN 193
           EFQHYETLRLLPKCGHVFHPPCIDAWLASCATCPICRA LAAGENFSSEFVAI VVD  N
Sbjct: 70  EFQHYETLRLLPKCGHVFHPPCIDAWLASCATCPICRANLAAGENFSSEFVAIGVVD-RN 129

Query: 194 GDVVHN 200
           G+VV N
Sbjct: 130 GEVVDN 134

[Close]

BLAST of CsaV3_6G045190 vs. NCBI nr
Match: XP_022133016.1 (E3 ubiquitin-protein ligase ATL6-like [Momordica charantia])

HSP 1 Score: 155.2 bits (391), Expect = 5.8e-34
Identity = 88/195 (45.13%), Postives = 128/195 (65.64%), Query Frame = 0


Query: 17  LIIILLHPFFTVQAQQ---SPSQSQSHLHYLK----LSRPLTVTVLLLLFIFFIVLFFSV 76
           L+++L + ++ + A        + ++   YLK    LSRP+ V +++L+ IFFI++F SV
Sbjct: 10  LLLLLFYAYYLLGANAFSGDQEEVEAEAEYLKLGPALSRPVAVLIVVLVSIFFIMVFLSV 69

Query: 77  YIRHFLELNAASDAVLRSLERVDRFG--PSHGLKAAEIGAFPLVAH---SAIKEMKMGKW 136
           Y+RH+LEL+A++ A + + + V+RFG  P  GL  A I  FP+V +   SA+K+      
Sbjct: 70  YLRHYLELHASTRATV-TADGVNRFGALPMCGLDPAVIRTFPVVVYHSDSAVKD------ 129

Query: 137 SLECAVCLAEFQHYETLRLLPKCGHVFHPPCIDAWLASCATCPICRAQLAAGENFSSEFV 196
            +ECAVCLAEFQH+ETLRL+PKCGHVFHP CIDAWL  CATCP+CRA+L +G +   +  
Sbjct: 130 HMECAVCLAEFQHHETLRLIPKCGHVFHPHCIDAWLGFCATCPLCRAELVSGSDSPDKST 189

Query: 197 AIDVVDHNNGDVVHN 200
           A    D + G V+ N
Sbjct: 190 AASEFDDHRGVVIIN 197

[Close]

BLAST of CsaV3_6G045190 vs. NCBI nr
Match: GFP98694.1 (E3 ubiquitin-protein ligase atl6 [Phtheirospermum japonicum])

HSP 1 Score: 143.3 bits (360), Expect = 2.3e-30
Identity = 83/190 (43.68%), Postives = 114/190 (60.00%), Query Frame = 0


Query: 13  SLSLLIIILLHPFFTVQAQQS-PSQSQSHLHYLKLSRPLTVTVLLLLFIFFIVLFFSVYI 72
           S+ LL+ +L   F  V  Q   PS   +   Y + S  + + +++L+   F + FFS+YI
Sbjct: 4   SVFLLLFLLPFLFVLVGGQPGPPSTPNNEYPYARFSPSMAIIIVVLIAALFFMGFFSIYI 63

Query: 73  RHFLELNAASDAVLRSLE-RVDRFGPSHGLKAAEIGAFPLVAHSAIKEMKMGKWSLECAV 132
           RH  + + A+ +V R+L  R  R   + GL A  I +FP  ++S +K+ K+GK +LECAV
Sbjct: 64  RHCSDSSGAAGSVRRALSLRSRRAAAARGLDAEAIASFPTFSYSEVKDHKIGKGTLECAV 123

Query: 133 CLAEFQHYETLRLLPKCGHVFHPPCIDAWLASCATCPICRAQLAAGENF-------SSEF 192
           CL EF+ +ETLRLLPKC HVFHP CIDAWL S  TCP+CRA LA   +        SS  
Sbjct: 124 CLNEFEEHETLRLLPKCDHVFHPECIDAWLESHVTCPVCRANLAEAADAADDPLPESSSS 183

Query: 193 VAIDVVDHNN 194
            A+  VDHNN
Sbjct: 184 TAVVDVDHNN 193

[Close]

BLAST of CsaV3_6G045190 vs. NCBI nr
Match: XP_024185323.1 (RING-H2 finger protein ATL32 [Rosa chinensis] >PRQ48564.1 putative transcription factor C2H2 family [Rosa chinensis])

HSP 1 Score: 140.2 bits (352), Expect = 1.9e-29
Identity = 79/172 (45.93%), Postives = 109/172 (63.37%), Query Frame = 0


Query: 11  LHS-LSLLIIILLHPFFTVQAQQSPS--QSQSHLHYLKLSRPLTVTVLLLLFIFFIVLFF 70
           LHS L LL+ ++L  +  V AQQSP   Q+  + +    +  + + ++ L+  FFIV FF
Sbjct: 3   LHSFLLLLLCLVLLTYTDVNAQQSPGPMQTNGYAYLENFNSSMALVIVFLVCAFFIVGFF 62

Query: 71  SVYIRHFLELNAA-SDAVLRSLERVDRFGPSHGLKAAEIGAFPLVAHSAIKEMKMGKWSL 130
           S+YIR   E + A +   L +   +   G   G+  A I  FP+  +S +K++K+GK +L
Sbjct: 63  SIYIRRCAETHIANAGGSLGAAAAIGMAGRRRGVDPAVIEKFPMFVYSDVKDLKIGKGTL 122

Query: 131 ECAVCLAEFQHYETLRLLPKCGHVFHPPCIDAWLASCATCPICRAQLAAGEN 179
           ECAVCL+EF+ YETLRLLPKC HVFHP CIDAWLAS  TCP+CRA+L    N
Sbjct: 123 ECAVCLSEFEDYETLRLLPKCHHVFHPDCIDAWLASHITCPVCRAKLTPDSN 174

[Close]

BLAST of CsaV3_6G045190 vs. ExPASy Swiss-Prot
Match: Q8RXX9 (E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana OX=3702 GN=ATL6 PE=1 SV=2)

HSP 1 Score: 117.1 bits (292), Expect = 2.3e-25
Identity = 64/162 (39.51%), Postives = 92/162 (56.79%), Query Frame = 0


Query: 14  LSLLIIILLHPFFTVQAQQSPSQSQSHLHYLKLSRPLTVTVLLLLFIFFIVLFFSVYIRH 73
           L ++ +++L       +Q  P  +    +Y +LS  + V V++L+   F + FFS+Y RH
Sbjct: 13  LPIVFLLILSSADLAASQSQPGPTNQPYNYGRLSPAMAVIVVILIAALFFMGFFSIYFRH 72

Query: 74  FLEL-NAASDAVLRSLERVDRFGPSHGLKAAEIGAFPLVAHSAIKEMKMGKWSLECAVCL 133
              + +A       +  R      + GL  + +  FP   +S +K  K+GK  LECA+CL
Sbjct: 73  CSGVPDAGVSPAGGARSRATVNAAARGLDVSVVETFPTFLYSDVKTQKLGKGELECAICL 132

Query: 134 AEFQHYETLRLLPKCGHVFHPPCIDAWLASCATCPICRAQLA 175
            EF+  ETLRLLPKC HVFHP CIDAWL +  TCP+CRA LA
Sbjct: 133 NEFEDDETLRLLPKCDHVFHPHCIDAWLEAHVTCPVCRANLA 174

[Close]

BLAST of CsaV3_6G045190 vs. ExPASy Swiss-Prot
Match: Q8LGA5 (E3 ubiquitin-protein ligase ATL31 OS=Arabidopsis thaliana OX=3702 GN=ATL31 PE=1 SV=2)

HSP 1 Score: 114.4 bits (285), Expect = 1.5e-24
Identity = 70/166 (42.17%), Postives = 94/166 (56.63%), Query Frame = 0


Query: 13  SLSLLIIILLHPFFTVQAQQSPSQSQSHLHYL---KLSRPLTVTVLLLLFIFFIVLFFSV 72
           SL +L++ LL    +V A Q  +  Q H  Y     LS  + V V++++   F + FF+V
Sbjct: 8   SLPVLVLFLL---LSVSAGQPGTPDQRHDPYAYSGSLSPAMAVVVVVVIAALFFMGFFTV 67

Query: 73  YIRHFL-ELNAASDAVLRSLERVDRFGPSHGLKAAEIGAFPLVAHSAIKEMKMGKWSLEC 132
           YIRH    ++ +      +  RV     + GL A  I  FP   +S +K  K+GK +LEC
Sbjct: 68  YIRHCTGAVDGSVTPAGGARRRVTNATVARGLDAETIETFPTFVYSEVKTQKIGKGALEC 127

Query: 133 AVCLAEFQHYETLRLLPKCGHVFHPPCIDAWLASCATCPICRAQLA 175
           A+CL EF+  ETLRLLPKC HVFHP CI AWL    TCP+CR  LA
Sbjct: 128 AICLNEFEDDETLRLLPKCDHVFHPHCIGAWLQGHVTCPVCRTNLA 170

[Close]

BLAST of CsaV3_6G045190 vs. ExPASy Swiss-Prot
Match: Q8W571 (RING-H2 finger protein ATL32 OS=Arabidopsis thaliana OX=3702 GN=ATL32 PE=2 SV=3)

HSP 1 Score: 106.3 bits (264), Expect = 4.1e-22
Identity = 66/162 (40.74%), Postives = 88/162 (54.32%), Query Frame = 0


Query: 20  ILLHPFFTVQAQ---QSPSQSQSHLHYLKLSRPLTVTVLLLLFIFFIVLFFSVYIRHFLE 79
           I+LH    +Q++   QS S S   L         TV  +L+  +FF+    SVYIRH   
Sbjct: 14  IILHVAIIIQSKANAQSFSPSPPDLQTGHTPSKTTVFAVLVT-LFFLTGLLSVYIRHCAR 73

Query: 80  LNAASDAVLRSLERVDRFGPSHGLKAAEIGAFPLVAHSAIKEMKMGKWSLECAVCLAEFQ 139
            N  S          D      GL  A + +FP+ A+S++KE K+G   LECA+CL E +
Sbjct: 74  SNPDSSTRYFRNRANDGSSRRGGLDNAVVESFPVFAYSSVKESKIGSKDLECAICLNELE 133

Query: 140 HYETLRLLPKCGHVFHPPCIDAWLASCATCPICRAQLAAGEN 179
            +ET+RLLP C H+FH  CID WL S ATCP+CR+ L A  N
Sbjct: 134 DHETVRLLPICNHLFHIDCIDTWLYSHATCPVCRSNLTAKSN 174

[Close]

BLAST of CsaV3_6G045190 vs. ExPASy Swiss-Prot
Match: Q84W40 (RING-H2 finger protein ATL11 OS=Arabidopsis thaliana OX=3702 GN=ATL11 PE=2 SV=2)

HSP 1 Score: 105.9 bits (263), Expect = 5.3e-22
Identity = 68/173 (39.31%), Postives = 97/173 (56.07%), Query Frame = 0


Query: 14  LSLLIIILL----HPFFTVQAQQSPSQSQSHLHYLKLSRPLTVTVLLLLFIFFIVLFFSV 73
           L LL+ +LL      F  V  Q +   S       +    + + +++L+ +FF + FFSV
Sbjct: 23  LQLLLFLLLLSSHGGFKFVAGQATHGGSDVSGDSSRFDPTMAILMIVLVSVFFFLGFFSV 82

Query: 74  YIRHFLEL---------NAASDAVLRSLERVDRFGPSHGLKAAEIGAFPLVAHSAIKEMK 133
           YIR  LE          N A + +  + ++      + GL A+ I  FP   +S +K ++
Sbjct: 83  YIRRCLERVMGMDYGNPNDAGNWLATNRQQ------ARGLDASIIETFPTFQYSTVKTLR 142

Query: 134 MGKWSLECAVCLAEFQHYETLRLLPKCGHVFHPPCIDAWLASCATCPICRAQL 174
           +GK +LEC+VCL EF+  ETLRL+PKC HVFHP CIDAWL S  TCP+CRA L
Sbjct: 143 IGKEALECSVCLNEFEDDETLRLIPKCCHVFHPGCIDAWLRSHTTCPLCRADL 189

[Close]

BLAST of CsaV3_6G045190 vs. ExPASy Swiss-Prot
Match: Q9SK92 (E3 ubiquitin-protein ligase ATL15 OS=Arabidopsis thaliana OX=3702 GN=ATL15 PE=1 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 7.7e-21
Identity = 59/134 (44.03%), Postives = 83/134 (61.94%), Query Frame = 0


Query: 52  VTVLLLLFIFFIVLFFSVYIRHFLELNAASDAVLRSLERVD-RFGPSHGLKAAEIGAFPL 111
           + +++L+ +FF +   SVY+R  L+     D+       ++ R     GL A+ I  FP 
Sbjct: 41  IIMIVLVSVFFALGCISVYMRRCLQHALGMDSGGGPGNWLNVRQTTEPGLDASVIETFPT 100

Query: 112 VAHSAIKEMKMGKWSLECAVCLAEFQHYETLRLLPKCGHVFHPPCIDAWLASCATCPICR 171
             +S +K +++GK +LEC VCL EF+  ETLRL+P+C HVFHP CIDAWL S  TCP+CR
Sbjct: 101 FPYSTVKTLRIGKEALECPVCLNEFEDDETLRLIPQCCHVFHPGCIDAWLRSQTTCPLCR 160

Query: 172 AQL--AAGENFSSE 183
           A L    GE+ SSE
Sbjct: 161 ANLVPVPGESVSSE 174

[Close]

BLAST of CsaV3_6G045190 vs. ExPASy TrEMBL
Match: A0A0A0KIT7 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G499190 PE=4 SV=1)

HSP 1 Score: 397.5 bits (1020), Expect = 3.3e-107
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 0


Query: 1   MKLPFSFTPNLHSLSLLIIILLHPFFTVQAQQSPSQSQSHLHYLKLSRPLTVTVLLLLFI 60
           MKLPFSFTPNLHSLSLLIIILLHPFFTVQAQQSPSQSQSHLHYLKLSRPLTVTVLLLLFI
Sbjct: 1   MKLPFSFTPNLHSLSLLIIILLHPFFTVQAQQSPSQSQSHLHYLKLSRPLTVTVLLLLFI 60

Query: 61  FFIVLFFSVYIRHFLELNAASDAVLRSLERVDRFGPSHGLKAAEIGAFPLVAHSAIKEMK 120
           FFIVLFFSVYIRHFLELNAASDAVLRSLERVDRFGPSHGLKAAEIGAFPLVAHSAIKEMK
Sbjct: 61  FFIVLFFSVYIRHFLELNAASDAVLRSLERVDRFGPSHGLKAAEIGAFPLVAHSAIKEMK 120

Query: 121 MGKWSLECAVCLAEFQHYETLRLLPKCGHVFHPPCIDAWLASCATCPICRAQLAAGENFS 180
           MGKWSLECAVCLAEFQHYETLRLLPKCGHVFHPPCIDAWLASCATCPICRAQLAAGENFS
Sbjct: 121 MGKWSLECAVCLAEFQHYETLRLLPKCGHVFHPPCIDAWLASCATCPICRAQLAAGENFS 180

Query: 181 SEFVAIDVVDHNNGDVVHN 200
           SEFVAIDVVDHNNGDVVHN
Sbjct: 181 SEFVAIDVVDHNNGDVVHN 199

[Close]

BLAST of CsaV3_6G045190 vs. ExPASy TrEMBL
Match: A0A5A7T2D1 (E3 ubiquitin-protein ligase ATL31-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G003080 PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 3.7e-58
Identity = 114/126 (90.48%), Postives = 118/126 (93.65%), Query Frame = 0


Query: 74  FLELNAASDAVLRSLERVDRFGPSHGLKAAEIGAFPLVAHSAIKEMKMGKWSLECAVCLA 133
           ++ELNAASDAVLRSL R+DRFGPSHGLK AEI AFPLVAHSAIKEMKMGKWSLECAVCLA
Sbjct: 10  WMELNAASDAVLRSLARLDRFGPSHGLKPAEILAFPLVAHSAIKEMKMGKWSLECAVCLA 69

Query: 134 EFQHYETLRLLPKCGHVFHPPCIDAWLASCATCPICRAQLAAGENFSSEFVAIDVVDHNN 193
           EFQHYETLRLLPKCGHVFHPPCIDAWLASCATCPICRA LAAGENFSSEFVAI VVD  N
Sbjct: 70  EFQHYETLRLLPKCGHVFHPPCIDAWLASCATCPICRANLAAGENFSSEFVAIGVVD-RN 129

Query: 194 GDVVHN 200
           G+VV N
Sbjct: 130 GEVVDN 134

[Close]

BLAST of CsaV3_6G045190 vs. ExPASy TrEMBL
Match: A0A6J1BTV2 (E3 ubiquitin-protein ligase ATL6-like OS=Momordica charantia OX=3673 GN=LOC111005711 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 2.8e-34
Identity = 88/195 (45.13%), Postives = 128/195 (65.64%), Query Frame = 0


Query: 17  LIIILLHPFFTVQAQQ---SPSQSQSHLHYLK----LSRPLTVTVLLLLFIFFIVLFFSV 76
           L+++L + ++ + A        + ++   YLK    LSRP+ V +++L+ IFFI++F SV
Sbjct: 10  LLLLLFYAYYLLGANAFSGDQEEVEAEAEYLKLGPALSRPVAVLIVVLVSIFFIMVFLSV 69

Query: 77  YIRHFLELNAASDAVLRSLERVDRFG--PSHGLKAAEIGAFPLVAH---SAIKEMKMGKW 136
           Y+RH+LEL+A++ A + + + V+RFG  P  GL  A I  FP+V +   SA+K+      
Sbjct: 70  YLRHYLELHASTRATV-TADGVNRFGALPMCGLDPAVIRTFPVVVYHSDSAVKD------ 129

Query: 137 SLECAVCLAEFQHYETLRLLPKCGHVFHPPCIDAWLASCATCPICRAQLAAGENFSSEFV 196
            +ECAVCLAEFQH+ETLRL+PKCGHVFHP CIDAWL  CATCP+CRA+L +G +   +  
Sbjct: 130 HMECAVCLAEFQHHETLRLIPKCGHVFHPHCIDAWLGFCATCPLCRAELVSGSDSPDKST 189

Query: 197 AIDVVDHNNGDVVHN 200
           A    D + G V+ N
Sbjct: 190 AASEFDDHRGVVIIN 197

[Close]

BLAST of CsaV3_6G045190 vs. ExPASy TrEMBL
Match: A0A2P6RQ73 (Putative transcription factor C2H2 family OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0112141 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 9.4e-30
Identity = 79/172 (45.93%), Postives = 109/172 (63.37%), Query Frame = 0


Query: 11  LHS-LSLLIIILLHPFFTVQAQQSPS--QSQSHLHYLKLSRPLTVTVLLLLFIFFIVLFF 70
           LHS L LL+ ++L  +  V AQQSP   Q+  + +    +  + + ++ L+  FFIV FF
Sbjct: 3   LHSFLLLLLCLVLLTYTDVNAQQSPGPMQTNGYAYLENFNSSMALVIVFLVCAFFIVGFF 62

Query: 71  SVYIRHFLELNAA-SDAVLRSLERVDRFGPSHGLKAAEIGAFPLVAHSAIKEMKMGKWSL 130
           S+YIR   E + A +   L +   +   G   G+  A I  FP+  +S +K++K+GK +L
Sbjct: 63  SIYIRRCAETHIANAGGSLGAAAAIGMAGRRRGVDPAVIEKFPMFVYSDVKDLKIGKGTL 122

Query: 131 ECAVCLAEFQHYETLRLLPKCGHVFHPPCIDAWLASCATCPICRAQLAAGEN 179
           ECAVCL+EF+ YETLRLLPKC HVFHP CIDAWLAS  TCP+CRA+L    N
Sbjct: 123 ECAVCLSEFEDYETLRLLPKCHHVFHPDCIDAWLASHITCPVCRAKLTPDSN 174

[Close]

BLAST of CsaV3_6G045190 vs. ExPASy TrEMBL
Match: A0A2C9VCW1 (RING-type domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_09G164200 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 3.6e-29
Identity = 80/169 (47.34%), Postives = 104/169 (61.54%), Query Frame = 0


Query: 6   SFTPNLHSLSLLIIILLHPFFTVQAQQSPSQSQSHLHYLKLSRPLTVTVLLLLFIFFIVL 65
           SFT      SL II LL   F V   Q+PS SQ    Y +++  + + +++L+   F++ 
Sbjct: 3   SFTHQRGIFSLSIIFLLASPFAV--AQTPSDSQDPYGYARVTPSMAIIIVVLIAALFLMG 62

Query: 66  FFSVYIRHFLELN-AASDAVLRSLERVDRFGPSHGLKAAEIGAFPLVAHSAIKEMKMGKW 125
           FFS+YIRH    +  AS   L +  R  R   S GL  A IG FP + +S +K +K+GK 
Sbjct: 63  FFSIYIRHCSSSSGGASVRALANGGRSRRAAASRGLDPAVIGTFPTLVYSEVKGLKIGKG 122

Query: 126 SLECAVCLAEFQHYETLRLLPKCGHVFHPPCIDAWLASCATCPICRAQL 174
           +LECAVCL EF+  ETLRL+PKC HVFHP CID WLAS  TCP+CRA L
Sbjct: 123 ALECAVCLCEFEDDETLRLIPKCDHVFHPDCIDLWLASHTTCPVCRANL 169

[Close]

BLAST of CsaV3_6G045190 vs. TAIR 10
Match: AT3G05200.1 (RING/U-box superfamily protein )

HSP 1 Score: 117.1 bits (292), Expect = 1.6e-26
Identity = 64/162 (39.51%), Postives = 92/162 (56.79%), Query Frame = 0


Query: 14  LSLLIIILLHPFFTVQAQQSPSQSQSHLHYLKLSRPLTVTVLLLLFIFFIVLFFSVYIRH 73
           L ++ +++L       +Q  P  +    +Y +LS  + V V++L+   F + FFS+Y RH
Sbjct: 13  LPIVFLLILSSADLAASQSQPGPTNQPYNYGRLSPAMAVIVVILIAALFFMGFFSIYFRH 72

Query: 74  FLEL-NAASDAVLRSLERVDRFGPSHGLKAAEIGAFPLVAHSAIKEMKMGKWSLECAVCL 133
              + +A       +  R      + GL  + +  FP   +S +K  K+GK  LECA+CL
Sbjct: 73  CSGVPDAGVSPAGGARSRATVNAAARGLDVSVVETFPTFLYSDVKTQKLGKGELECAICL 132

Query: 134 AEFQHYETLRLLPKCGHVFHPPCIDAWLASCATCPICRAQLA 175
            EF+  ETLRLLPKC HVFHP CIDAWL +  TCP+CRA LA
Sbjct: 133 NEFEDDETLRLLPKCDHVFHPHCIDAWLEAHVTCPVCRANLA 174

[Close]

BLAST of CsaV3_6G045190 vs. TAIR 10
Match: AT5G27420.1 (carbon/nitrogen insensitive 1 )

HSP 1 Score: 114.4 bits (285), Expect = 1.1e-25
Identity = 70/166 (42.17%), Postives = 94/166 (56.63%), Query Frame = 0


Query: 13  SLSLLIIILLHPFFTVQAQQSPSQSQSHLHYL---KLSRPLTVTVLLLLFIFFIVLFFSV 72
           SL +L++ LL    +V A Q  +  Q H  Y     LS  + V V++++   F + FF+V
Sbjct: 8   SLPVLVLFLL---LSVSAGQPGTPDQRHDPYAYSGSLSPAMAVVVVVVIAALFFMGFFTV 67

Query: 73  YIRHFL-ELNAASDAVLRSLERVDRFGPSHGLKAAEIGAFPLVAHSAIKEMKMGKWSLEC 132
           YIRH    ++ +      +  RV     + GL A  I  FP   +S +K  K+GK +LEC
Sbjct: 68  YIRHCTGAVDGSVTPAGGARRRVTNATVARGLDAETIETFPTFVYSEVKTQKIGKGALEC 127

Query: 133 AVCLAEFQHYETLRLLPKCGHVFHPPCIDAWLASCATCPICRAQLA 175
           A+CL EF+  ETLRLLPKC HVFHP CI AWL    TCP+CR  LA
Sbjct: 128 AICLNEFEDDETLRLLPKCDHVFHPHCIGAWLQGHVTCPVCRTNLA 170

[Close]

BLAST of CsaV3_6G045190 vs. TAIR 10
Match: AT4G40070.1 (RING/U-box superfamily protein )

HSP 1 Score: 106.3 bits (264), Expect = 2.9e-23
Identity = 66/162 (40.74%), Postives = 88/162 (54.32%), Query Frame = 0


Query: 20  ILLHPFFTVQAQ---QSPSQSQSHLHYLKLSRPLTVTVLLLLFIFFIVLFFSVYIRHFLE 79
           I+LH    +Q++   QS S S   L         TV  +L+  +FF+    SVYIRH   
Sbjct: 14  IILHVAIIIQSKANAQSFSPSPPDLQTGHTPSKTTVFAVLVT-LFFLTGLLSVYIRHCAR 73

Query: 80  LNAASDAVLRSLERVDRFGPSHGLKAAEIGAFPLVAHSAIKEMKMGKWSLECAVCLAEFQ 139
            N  S          D      GL  A + +FP+ A+S++KE K+G   LECA+CL E +
Sbjct: 74  SNPDSSTRYFRNRANDGSSRRGGLDNAVVESFPVFAYSSVKESKIGSKDLECAICLNELE 133

Query: 140 HYETLRLLPKCGHVFHPPCIDAWLASCATCPICRAQLAAGEN 179
            +ET+RLLP C H+FH  CID WL S ATCP+CR+ L A  N
Sbjct: 134 DHETVRLLPICNHLFHIDCIDTWLYSHATCPVCRSNLTAKSN 174

[Close]

BLAST of CsaV3_6G045190 vs. TAIR 10
Match: AT1G72200.1 (RING/U-box superfamily protein )

HSP 1 Score: 105.9 bits (263), Expect = 3.8e-23
Identity = 68/173 (39.31%), Postives = 97/173 (56.07%), Query Frame = 0


Query: 14  LSLLIIILL----HPFFTVQAQQSPSQSQSHLHYLKLSRPLTVTVLLLLFIFFIVLFFSV 73
           L LL+ +LL      F  V  Q +   S       +    + + +++L+ +FF + FFSV
Sbjct: 23  LQLLLFLLLLSSHGGFKFVAGQATHGGSDVSGDSSRFDPTMAILMIVLVSVFFFLGFFSV 82

Query: 74  YIRHFLEL---------NAASDAVLRSLERVDRFGPSHGLKAAEIGAFPLVAHSAIKEMK 133
           YIR  LE          N A + +  + ++      + GL A+ I  FP   +S +K ++
Sbjct: 83  YIRRCLERVMGMDYGNPNDAGNWLATNRQQ------ARGLDASIIETFPTFQYSTVKTLR 142

Query: 134 MGKWSLECAVCLAEFQHYETLRLLPKCGHVFHPPCIDAWLASCATCPICRAQL 174
           +GK +LEC+VCL EF+  ETLRL+PKC HVFHP CIDAWL S  TCP+CRA L
Sbjct: 143 IGKEALECSVCLNEFEDDETLRLIPKCCHVFHPGCIDAWLRSHTTCPLCRADL 189

[Close]

BLAST of CsaV3_6G045190 vs. TAIR 10
Match: AT1G22500.1 (RING/U-box superfamily protein )

HSP 1 Score: 102.1 bits (253), Expect = 5.5e-22
Identity = 59/134 (44.03%), Postives = 83/134 (61.94%), Query Frame = 0


Query: 52  VTVLLLLFIFFIVLFFSVYIRHFLELNAASDAVLRSLERVD-RFGPSHGLKAAEIGAFPL 111
           + +++L+ +FF +   SVY+R  L+     D+       ++ R     GL A+ I  FP 
Sbjct: 41  IIMIVLVSVFFALGCISVYMRRCLQHALGMDSGGGPGNWLNVRQTTEPGLDASVIETFPT 100

Query: 112 VAHSAIKEMKMGKWSLECAVCLAEFQHYETLRLLPKCGHVFHPPCIDAWLASCATCPICR 171
             +S +K +++GK +LEC VCL EF+  ETLRL+P+C HVFHP CIDAWL S  TCP+CR
Sbjct: 101 FPYSTVKTLRIGKEALECPVCLNEFEDDETLRLIPQCCHVFHPGCIDAWLRSQTTCPLCR 160

Query: 172 AQL--AAGENFSSE 183
           A L    GE+ SSE
Sbjct: 161 ANLVPVPGESVSSE 174

The following BLAST results are available for this feature:

BLAST of CsaV3_6G045190 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN48724.1	6.8e-107	100.00	hypothetical protein Csa_004396 [Cucumis sativus]	[more]
KAA0036326.1	7.6e-58	90.48	E3 ubiquitin-protein ligase ATL31-like [Cucumis melo var. makuwa] >TYK12720.1 E3...	[more]
XP_022133016.1	5.8e-34	45.13	E3 ubiquitin-protein ligase ATL6-like [Momordica charantia]	[more]
GFP98694.1	2.3e-30	43.68	E3 ubiquitin-protein ligase atl6 [Phtheirospermum japonicum]	[more]
XP_024185323.1	1.9e-29	45.93	RING-H2 finger protein ATL32 [Rosa chinensis] >PRQ48564.1 putative transcription...	[more]

BLAST of CsaV3_6G045190 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RXX9	2.3e-25	39.51	E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana OX=3702 GN=ATL6 PE=1 SV...	[more]
Q8LGA5	1.5e-24	42.17	E3 ubiquitin-protein ligase ATL31 OS=Arabidopsis thaliana OX=3702 GN=ATL31 PE=1 ...	[more]
Q8W571	4.1e-22	40.74	RING-H2 finger protein ATL32 OS=Arabidopsis thaliana OX=3702 GN=ATL32 PE=2 SV=3	[more]
Q84W40	5.3e-22	39.31	RING-H2 finger protein ATL11 OS=Arabidopsis thaliana OX=3702 GN=ATL11 PE=2 SV=2	[more]
Q9SK92	7.7e-21	44.03	E3 ubiquitin-protein ligase ATL15 OS=Arabidopsis thaliana OX=3702 GN=ATL15 PE=1 ...	[more]

BLAST of CsaV3_6G045190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KIT7	3.3e-107	100.00	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G499190 P...	[more]
A0A5A7T2D1	3.7e-58	90.48	E3 ubiquitin-protein ligase ATL31-like OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A6J1BTV2	2.8e-34	45.13	E3 ubiquitin-protein ligase ATL6-like OS=Momordica charantia OX=3673 GN=LOC11100...	[more]
A0A2P6RQ73	9.4e-30	45.93	Putative transcription factor C2H2 family OS=Rosa chinensis OX=74649 GN=RchiOBHm...	[more]
A0A2C9VCW1	3.6e-29	47.34	RING-type domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_09G164...	[more]

BLAST of CsaV3_6G045190 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05200.1	1.6e-26	39.51	RING/U-box superfamily protein	[more]
AT5G27420.1	1.1e-25	42.17	carbon/nitrogen insensitive 1	[more]
AT4G40070.1	2.9e-23	40.74	RING/U-box superfamily protein	[more]
AT1G72200.1	3.8e-23	39.31	RING/U-box superfamily protein	[more]
AT1G22500.1	5.5e-22	44.03	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 128..169 e-value: 1.2E-5 score: 34.8
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 127..170 e-value: 6.0E-12 score: 45.7
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 128..170 score: 12.297489
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 92..175 e-value: 8.3E-19 score: 69.0
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 14..181
None	No IPR available	PANTHER	PTHR14155:SF576	E3 UBIQUITIN-PROTEIN LIGASE ATL31-LIKE	coord: 14..181
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 127..170 e-value: 1.76955E-15 score: 65.4009
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 127..174

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G045190.1	CsaV3_6G045190.1	mRNA