CsaV3_6G042780 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G042780
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Mitochondrial transcription termination factor family protein
Location	chr6: 25152592 .. 25152777 (-)
RNA-Seq Expression	CsaV3_6G042780
Synteny	CsaV3_6G042780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTCATACAAAAAACAGGGCTCTCACAGGGTGGCAAGTTGTTCAAATACGTCGTTTCAATCATTTGTATCTCACGACTTGAAACAATTCATCAACAAGTAGCCAATTTGAAGAAGTTTGGTTTCACAGAAGATGAGACATTTTCGGCGATCTCCCCTTACCTTGACTCTATCAGTCGATAA

mRNA sequence

ATGGATTTCATACAAAAAACAGGGCTCTCACAGGGTGGCAAGTTGTTCAAATACGTCGTTTCAATCATTTGTATCTCACGACTTGAAACAATTCATCAACAAGTAGCCAATTTGAAGAAGTTTGGTTTCACAGAAGATGAGACATTTTCGGCGATCTCCCCTTACCTTGACTCTATCAGTCGATAA

Coding sequence (CDS)

ATGGATTTCATACAAAAAACAGGGCTCTCACAGGGTGGCAAGTTGTTCAAATACGTCGTTTCAATCATTTGTATCTCACGACTTGAAACAATTCATCAACAAGTAGCCAATTTGAAGAAGTTTGGTTTCACAGAAGATGAGACATTTTCGGCGATCTCCCCTTACCTTGACTCTATCAGTCGATAA

Protein sequence

MDFIQKTGLSQGGKLFKYVVSIICISRLETIHQQVANLKKFGFTEDETFSAISPYLDSISR*

Homology

[Close]

BLAST of CsaV3_6G042780 vs. NCBI nr
Match: XP_031742903.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC105436024 [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 1.2e-25
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1   MDFIQKTGLSQGGKLFKYVVSIICISRLETIHQQVANLKKFGFTEDETFSAISPYLDSIS 60
           MDFIQKTGLSQGGKLFKYVVSIICISRLETIHQQVANLKKFGFTEDETFSAISPYLDSIS
Sbjct: 165 MDFIQKTGLSQGGKLFKYVVSIICISRLETIHQQVANLKKFGFTEDETFSAISPYLDSIS 224

Query: 61  R 62
           R
Sbjct: 225 R 225

[Close]

BLAST of CsaV3_6G042780 vs. NCBI nr
Match: KGN48476.1 (hypothetical protein Csa_004365 [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 1.2e-25
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MDFIQKTGLSQGGKLFKYVVSIICISRLETIHQQVANLKKFGFTEDETFSAISPYLDSIS 60
          MDFIQKTGLSQGGKLFKYVVSIICISRLETIHQQVANLKKFGFTEDETFSAISPYLDSIS
Sbjct: 1  MDFIQKTGLSQGGKLFKYVVSIICISRLETIHQQVANLKKFGFTEDETFSAISPYLDSIS 60

Query: 61 R 62
          R
Sbjct: 61 R 61

[Close]

BLAST of CsaV3_6G042780 vs. NCBI nr
Match: TYK12925.1 (Mitochondrial transcription termination factor family protein [Cucumis melo var. makuwa])

HSP 1 Score: 92.0 bits (227), Expect = 1.9e-15
Identity = 44/52 (84.62%), Postives = 48/52 (92.31%), Query Frame = 0


Query: 1  MDFIQKTGLSQGGKLFKYVVSIICISRLETIHQQVANLKKFGFTEDETFSAI 53
          M+FIQKTGLSQG KLFKYVV+IICISRLETI Q+VANLKKFGFTEDE F+ I
Sbjct: 19 MEFIQKTGLSQGDKLFKYVVTIICISRLETIRQKVANLKKFGFTEDEKFALI 70

[Close]

BLAST of CsaV3_6G042780 vs. NCBI nr
Match: XP_008440198.1 (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103484733 [Cucumis melo])

HSP 1 Score: 92.0 bits (227), Expect = 1.9e-15
Identity = 44/52 (84.62%), Postives = 48/52 (92.31%), Query Frame = 0


Query: 1   MDFIQKTGLSQGGKLFKYVVSIICISRLETIHQQVANLKKFGFTEDETFSAI 53
           M+FIQKTGLSQG KLFKYVV+IICISRLETI Q+VANLKKFGFTEDE F+ I
Sbjct: 191 MEFIQKTGLSQGDKLFKYVVTIICISRLETIRQKVANLKKFGFTEDEKFALI 242

[Close]

BLAST of CsaV3_6G042780 vs. NCBI nr
Match: XP_038881817.1 (uncharacterized protein LOC120073205, partial [Benincasa hispida])

HSP 1 Score: 82.8 bits (203), Expect = 1.1e-12
Identity = 41/62 (66.13%), Postives = 52/62 (83.87%), Query Frame = 0


Query: 1   MDFIQKTGLSQGGKLFKYVVSIICISRLETIHQQVANLKKFGFTEDETFSAI--SPYLDS 60
           M++IQKTGLSQG K+FKYVV+II ISRLETI  +VANL+KFGFTEDE F+ +  SP + +
Sbjct: 236 MEYIQKTGLSQGDKMFKYVVTIIGISRLETIRHKVANLEKFGFTEDEIFALLGRSPLILT 295

[Close]

BLAST of CsaV3_6G042780 vs. ExPASy TrEMBL
Match: A0A0A0KL55 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G489920 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 5.7e-26
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MDFIQKTGLSQGGKLFKYVVSIICISRLETIHQQVANLKKFGFTEDETFSAISPYLDSIS 60
          MDFIQKTGLSQGGKLFKYVVSIICISRLETIHQQVANLKKFGFTEDETFSAISPYLDSIS
Sbjct: 1  MDFIQKTGLSQGGKLFKYVVSIICISRLETIHQQVANLKKFGFTEDETFSAISPYLDSIS 60

Query: 61 R 62
          R
Sbjct: 61 R 61

[Close]

BLAST of CsaV3_6G042780 vs. ExPASy TrEMBL
Match: A0A5D3CMY9 (Mitochondrial transcription termination factor family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G005200 PE=3 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 9.1e-16
Identity = 44/52 (84.62%), Postives = 48/52 (92.31%), Query Frame = 0


Query: 1  MDFIQKTGLSQGGKLFKYVVSIICISRLETIHQQVANLKKFGFTEDETFSAI 53
          M+FIQKTGLSQG KLFKYVV+IICISRLETI Q+VANLKKFGFTEDE F+ I
Sbjct: 19 MEFIQKTGLSQGDKLFKYVVTIICISRLETIRQKVANLKKFGFTEDEKFALI 70

[Close]

BLAST of CsaV3_6G042780 vs. ExPASy TrEMBL
Match: A0A1S3B056 (LOW QUALITY PROTEIN: uncharacterized protein LOC103484733 OS=Cucumis melo OX=3656 GN=LOC103484733 PE=3 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 9.1e-16
Identity = 44/52 (84.62%), Postives = 48/52 (92.31%), Query Frame = 0


Query: 1   MDFIQKTGLSQGGKLFKYVVSIICISRLETIHQQVANLKKFGFTEDETFSAI 53
           M+FIQKTGLSQG KLFKYVV+IICISRLETI Q+VANLKKFGFTEDE F+ I
Sbjct: 191 MEFIQKTGLSQGDKLFKYVVTIICISRLETIRQKVANLKKFGFTEDEKFALI 242

[Close]

BLAST of CsaV3_6G042780 vs. ExPASy TrEMBL
Match: A0A6J1IQK9 (uncharacterized protein LOC111478530 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111478530 PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.6e-12
Identity = 39/62 (62.90%), Postives = 52/62 (83.87%), Query Frame = 0


Query: 1   MDFIQKTGLSQGGKLFKYVVSIICISRLETIHQQVANLKKFGFTEDETFSAI--SPYLDS 60
           M +IQKTGL+ G K++KY+V+II ISRLETI Q+VANL+KFGFTEDETF+ +  SP + +
Sbjct: 200 MGYIQKTGLTHGDKMYKYIVTIIGISRLETIRQKVANLEKFGFTEDETFTLLGRSPLILT 259

[Close]

BLAST of CsaV3_6G042780 vs. ExPASy TrEMBL
Match: A0A6J1IUG6 (uncharacterized protein LOC111478530 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111478530 PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.6e-12
Identity = 39/62 (62.90%), Postives = 52/62 (83.87%), Query Frame = 0


Query: 1   MDFIQKTGLSQGGKLFKYVVSIICISRLETIHQQVANLKKFGFTEDETFSAI--SPYLDS 60
           M +IQKTGL+ G K++KY+V+II ISRLETI Q+VANL+KFGFTEDETF+ +  SP + +
Sbjct: 272 MGYIQKTGLTHGDKMYKYIVTIIGISRLETIRQKVANLEKFGFTEDETFTLLGRSPLILT 331

[Close]

BLAST of CsaV3_6G042780 vs. TAIR 10
Match: AT1G79220.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 60.8 bits (146), Expect = 4.3e-10
Identity = 25/46 (54.35%), Postives = 39/46 (84.78%), Query Frame = 0


Query: 2   DFIQKTGLSQGGKLFKYVVSIICISRLETIHQQVANLKKFGFTEDE 48
           ++I+KTG+++  K+FKYV  II +SR+ETI ++V NL+KFGF+E+E
Sbjct: 224 EYIEKTGVTRESKMFKYVAVIIGVSRMETIEEKVRNLEKFGFSEEE 269

The following BLAST results are available for this feature:

BLAST of CsaV3_6G042780 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031742903.1	1.2e-25	100.00	LOW QUALITY PROTEIN: uncharacterized protein LOC105436024 [Cucumis sativus]	[more]
KGN48476.1	1.2e-25	100.00	hypothetical protein Csa_004365 [Cucumis sativus]	[more]
TYK12925.1	1.9e-15	84.62	Mitochondrial transcription termination factor family protein [Cucumis melo var....	[more]
XP_008440198.1	1.9e-15	84.62	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103484733 [Cucumis me...	[more]
XP_038881817.1	1.1e-12	66.13	uncharacterized protein LOC120073205, partial [Benincasa hispida]	[more]

BLAST of CsaV3_6G042780 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G042780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KL55	5.7e-26	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G489920 PE=4 SV=1	[more]
A0A5D3CMY9	9.1e-16	84.62	Mitochondrial transcription termination factor family protein OS=Cucumis melo va...	[more]
A0A1S3B056	9.1e-16	84.62	LOW QUALITY PROTEIN: uncharacterized protein LOC103484733 OS=Cucumis melo OX=365...	[more]
A0A6J1IQK9	1.6e-12	62.90	uncharacterized protein LOC111478530 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1IUG6	1.6e-12	62.90	uncharacterized protein LOC111478530 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of CsaV3_6G042780 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G79220.1	4.3e-10	54.35	Mitochondrial transcription termination factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PANTHER	PTHR13068	CGI-12 PROTEIN-RELATED	coord: 1..58
None	No IPR available	PANTHER	PTHR13068:SF112	MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN	coord: 1..58

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G042780.1	CsaV3_6G042780.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003690	double-stranded DNA binding