CsaV3_6G042120 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G042120
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6: 24648610 .. 24649877 (-)
RNA-Seq ExpressionCsaV3_6G042120
SyntenyCsaV3_6G042120
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TATAATTTTCAAGATTAGCTCCATAAACTTACTTTTGTAACTCAAAATTTCATATAATCGTATACAATTTAAGATAAATTATTTAAGAAAGCTATTATTGAAAAGTCTAATTTATTTTTCAAAAAAAAATTGTGAAGTAAAAAGCGATTTATATTTTATAATGTCCTATTCGATGATTGTACATATAAAAATGGATTCTAAACACAAATTTGGTGAATACATCTAGTTTTGATTGGTCCATACCACCATTAATACCATCACTTAGATGAAAAACAATATGTTAGAACAATATCAATCCCATCTGCAGCTTCATTCTGGGAAGGATACCACAATCCAATTAAGGAAAATTAAGATTCCATAGGAACAGGCAACTTCAATGCTGCAAAAGCCCACAAATTCAGCAAGGTTATATGAGAATTCAAGCATTTTAAATTCAAAGAAAAAACTGAAGAAACAAGAAACGACCATAAACATTTTTCTGGTGTATGTTCTTTCGATAATGTTTATTGAGAAATAAGCCTTAGGATTTAAGTATATGACACTGAATTCCAAACAACAGAAAGCATGGTGAATGTGAATGTATAAAGGAATCAATGAATGACACACCTTTGATTTATCAAATTGGGTTTTATTTTTCATAAGTTGATAAGAAACTCAGACATCCAAGGAAGGAAAAAAAGCAGCAATAGCTCTCAAGCCTGGCGAAGGCGAAAGCTCTCAGGCGGCCACTGCGAATGTTCTGAGAAACAAGCCTTAAGGATATCATCACTGTTAAGAGTTCTCCAACGGGTAAAAGTCATACAAATCAAGCATGTAAAATCGAATAATGAAAGTGAAAATCTTCCATCCAGCAATGATCAGCAAGACATAATAGAAAGAGCTGACAAAGTGAAAAGGATGGAAATGAATATATGGGACTTTGTTCATCCCTAAAGCACTCAAAACACTACTACAGAGACAGACGCAAAGTCCCGACTAGTGAATTTCAGGGGAAATTTCAAAACCCAAATCCAAAATTCATAGAAAACAGAAAATTCCATATCCAGGCATTTAGATTAAATAGACAGAAACCAAAATGCATATTGTTCGTTAGAGTCTCAGACATCCAAGGAAGGATAAAAACAGCAGAAGCTCTCAAGCCCGGCGAAGGCGAAAGCTCTCAGGCGGCCACTGCGAATGTTTTGAGAAACAAGCCTTATAAATTTATCCTCACCGACCCATTACCACATTATCTACAGCACCAAGAGAGATTAATCAAGAGTCCATAA

mRNA sequence

ATGGGACTTTGTTCATCCCTAAAGCACTCAAAACACTACTACAGAGACAGACGCAAAGTCCCGACTAGTGAATTTCAGGGGAAATTTCAAAACCCAAATCCAAAATTCATAGAAAACAGAAAATTCCATATCCAGGCATTTAGATTAAATAGACAGAAACCAAAATGCATATTGTTCGTTAGAGTCTCAGACATCCAAGGAAGGATAAAAACAGCAGAAGCTCTCAAGCCCGGCGAAGGCGAAAGCTCTCAGGCGGCCACTGCGAATGTTTTGAGAAACAAGCCTTATAAATTTATCCTCACCGACCCATTACCACATTATCTACAGCACCAAGAGAGATTAATCAAGAGTCCATAA

Coding sequence (CDS)

ATGGGACTTTGTTCATCCCTAAAGCACTCAAAACACTACTACAGAGACAGACGCAAAGTCCCGACTAGTGAATTTCAGGGGAAATTTCAAAACCCAAATCCAAAATTCATAGAAAACAGAAAATTCCATATCCAGGCATTTAGATTAAATAGACAGAAACCAAAATGCATATTGTTCGTTAGAGTCTCAGACATCCAAGGAAGGATAAAAACAGCAGAAGCTCTCAAGCCCGGCGAAGGCGAAAGCTCTCAGGCGGCCACTGCGAATGTTTTGAGAAACAAGCCTTATAAATTTATCCTCACCGACCCATTACCACATTATCTACAGCACCAAGAGAGATTAATCAAGAGTCCATAA

Protein sequence

MGLCSSLKHSKHYYRDRRKVPTSEFQGKFQNPNPKFIENRKFHIQAFRLNRQKPKCILFVRVSDIQGRIKTAEALKPGEGESSQAATANVLRNKPYKFILTDPLPHYLQHQERLIKSP*
Homology
[Close]
BLAST of CsaV3_6G042120 vs. NCBI nr
Match: KGN48407.1 (hypothetical protein Csa_003040 [Cucumis sativus])

HSP 1 Score: 245.4 bits (625), Expect = 2.6e-61
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0 

Query: 1   MGLCSSLKHSKHYYRDRRKVPTSEFQGKFQNPNPKFIENRKFHIQAFRLNRQKPKCILFV 60
           MGLCSSLKHSKHYYRDRRKVPTSEFQGKFQNPNPKFIENRKFHIQAFRLNRQKPKCILFV
Sbjct: 1   MGLCSSLKHSKHYYRDRRKVPTSEFQGKFQNPNPKFIENRKFHIQAFRLNRQKPKCILFV 60

Query: 61  RVSDIQGRIKTAEALKPGEGESSQAATANVLRNKPYKFILTDPLPHYLQHQERLIKSP 119
           RVSDIQGRIKTAEALKPGEGESSQAATANVLRNKPYKFILTDPLPHYLQHQERLIKSP
Sbjct: 61  RVSDIQGRIKTAEALKPGEGESSQAATANVLRNKPYKFILTDPLPHYLQHQERLIKSP 118

[Close]
BLAST of CsaV3_6G042120 vs. NCBI nr
Match: KCW62444.1 (hypothetical protein EUGRSUZ_H05083 [Eucalyptus grandis])

HSP 1 Score: 62.0 bits (149), Expect = 4.0e-06
Identity = 31/34 (91.18%), Postives = 32/34 (94.12%), Query Frame = 0 

Query: 62 VSDIQGRIKTAEALKPGEGESSQAATANVLRNKP 96
          VSDIQGRIK A ALKPGEG+SSQAATANVLRNKP
Sbjct: 2  VSDIQGRIKAALALKPGEGKSSQAATANVLRNKP 35

[Close]
BLAST of CsaV3_6G042120 vs. NCBI nr
Match: KAF1862432.1 (hypothetical protein Lal_00026966 [Lupinus albus])

HSP 1 Score: 57.0 bits (136), Expect = 1.3e-04
Identity = 27/42 (64.29%), Postives = 32/42 (76.19%), Query Frame = 0 

Query: 57 ILFVRVSDIQGRIKTAEALKPGEGESSQAATANVLRNKPYKF 99
          I+   VSDIQGRI+T   LKPGEGE+S +AT NVLRNKP  +
Sbjct: 44 IVMTNVSDIQGRIRTTLVLKPGEGENSWSATVNVLRNKPSNY 85

[Close]
BLAST of CsaV3_6G042120 vs. NCBI nr
Match: KAF1862195.1 (hypothetical protein Lal_00026719 [Lupinus albus])

HSP 1 Score: 56.6 bits (135), Expect = 1.7e-04
Identity = 27/37 (72.97%), Postives = 31/37 (83.78%), Query Frame = 0 

Query: 62  VSDIQGRIKTAEALKPGEGESSQAATANVLRNKPYKF 99
           VSDIQGRI+T   LKPGEGE+S +ATANVLRNKP  +
Sbjct: 111 VSDIQGRIRTTLVLKPGEGENSWSATANVLRNKPTNY 147

[Close]
BLAST of CsaV3_6G042120 vs. ExPASy TrEMBL
Match: A0A0A0KJ49 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G486800 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 1.2e-61
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0 

Query: 1   MGLCSSLKHSKHYYRDRRKVPTSEFQGKFQNPNPKFIENRKFHIQAFRLNRQKPKCILFV 60
           MGLCSSLKHSKHYYRDRRKVPTSEFQGKFQNPNPKFIENRKFHIQAFRLNRQKPKCILFV
Sbjct: 1   MGLCSSLKHSKHYYRDRRKVPTSEFQGKFQNPNPKFIENRKFHIQAFRLNRQKPKCILFV 60

Query: 61  RVSDIQGRIKTAEALKPGEGESSQAATANVLRNKPYKFILTDPLPHYLQHQERLIKSP 119
           RVSDIQGRIKTAEALKPGEGESSQAATANVLRNKPYKFILTDPLPHYLQHQERLIKSP
Sbjct: 61  RVSDIQGRIKTAEALKPGEGESSQAATANVLRNKPYKFILTDPLPHYLQHQERLIKSP 118

[Close]
BLAST of CsaV3_6G042120 vs. ExPASy TrEMBL
Match: A0A059B8W6 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_H05083 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.9e-06
Identity = 31/34 (91.18%), Postives = 32/34 (94.12%), Query Frame = 0 

Query: 62 VSDIQGRIKTAEALKPGEGESSQAATANVLRNKP 96
          VSDIQGRIK A ALKPGEG+SSQAATANVLRNKP
Sbjct: 2  VSDIQGRIKAALALKPGEGKSSQAATANVLRNKP 35

[Close]
BLAST of CsaV3_6G042120 vs. ExPASy TrEMBL
Match: A0A6A5LUV2 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00026966 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 6.2e-05
Identity = 27/42 (64.29%), Postives = 32/42 (76.19%), Query Frame = 0 

Query: 57 ILFVRVSDIQGRIKTAEALKPGEGESSQAATANVLRNKPYKF 99
          I+   VSDIQGRI+T   LKPGEGE+S +AT NVLRNKP  +
Sbjct: 44 IVMTNVSDIQGRIRTTLVLKPGEGENSWSATVNVLRNKPSNY 85

[Close]
BLAST of CsaV3_6G042120 vs. ExPASy TrEMBL
Match: A0A6A5LTA5 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00026719 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 8.1e-05
Identity = 27/37 (72.97%), Postives = 31/37 (83.78%), Query Frame = 0 

Query: 62  VSDIQGRIKTAEALKPGEGESSQAATANVLRNKPYKF 99
           VSDIQGRI+T   LKPGEGE+S +ATANVLRNKP  +
Sbjct: 111 VSDIQGRIRTTLVLKPGEGENSWSATANVLRNKPTNY 147

The following BLAST results are available for this feature:
BLAST of CsaV3_6G042120 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN48407.12.6e-61100.00hypothetical protein Csa_003040 [Cucumis sativus][more]
KCW62444.14.0e-0691.18hypothetical protein EUGRSUZ_H05083 [Eucalyptus grandis][more]
KAF1862432.11.3e-0464.29hypothetical protein Lal_00026966 [Lupinus albus][more]
KAF1862195.11.7e-0472.97hypothetical protein Lal_00026719 [Lupinus albus][more]
BLAST of CsaV3_6G042120 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G042120 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KJ491.2e-61100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G486800 PE=4 SV=1[more]
A0A059B8W61.9e-0691.18Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_H05083 PE=4 SV... [more]
A0A6A5LUV26.2e-0564.29Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00026966 PE=4 SV=1[more]
A0A6A5LTA58.1e-0572.97Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00026719 PE=4 SV=1[more]
BLAST of CsaV3_6G042120 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G042120.1CsaV3_6G042120.1mRNA