CsaV3_6G040360 (gene) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCAGAATCATCATCATCCATCAAAAACAAAGCTGGTGCAAGCAAATGCAGCAGCGACGAAGAAGAAAAAGTTGGAAACATTGATCTGGGGTTGTCAATGAAAAACTTGAGTCTTGGCCCAAAAAAGAAGCTTTTGATTATGGGAATCGGTGGATTTCTTTGTCACAGAGTCTGTTATCGTTACGGCAGACAAAAGATCCCAACACATCGTCTTCCTGATGCATCCTATGGCAGTTTCTATGGTCACCATTCTCCTTTTGATTTTCTTCTCTCAATGATTTGTTGTAATTATTATTATTATCTTTTTCATTTACTTATGAACAAGGATTTCTAATCTTGGGATAAAAAAAAAAAAAGGTTTTCTTTTTAGTTTTATAAACATGAATAATATTCATAAACTAAAATTTAAAAAGAGACTTGGTTACTGTCTTTGTTTTTTCTTCTTTCATTTTACTATCCTATCTTAGGTTGTATCTGTTTTAATAAGAGCTACATTTTTAATCAAATCTTAAATATATTTCAGATGATGGTGGTGCTCAATCTTAATCCATTCTCACATTATACACAGATTAATTACATTTATTTTTTCTAATTTAGTTGTCCATATCTCTATGCTAGTTTACAAGAGACCGTTCTGTGAGGACTTTATGAAGTTCTGCTTAGAGAGGTTTGAAGTTGGTATATGGTCTTCAGCAAAAGAGTTAGTCAATCTCAATTTAATTTTGACAAAACCATATTTTATTTGCAACTAATTATTAAATAGACAATTTTATTTTTTTAATAAGTTTGTATTATCTTTCAAACATCTGCATATATGTATATATATAGATGGTACTTGGACAGTGCCTTGGATTCTATAATGCATGGATTGAGAAGCAGACTTCTATTTGCATGGGTAAGCAATATATTTAGTACCCAAAACCTTGCAATAAATTATACTTTTAGCCTTATTAAAAATTGGTGTCAAATTCAAATTTTATTATTTTTTTGTTTGTTGGGTTTTTTTATAGGATCAAGGGGAGTGCACAAAGACCTGTTTCTTTGACTTGGAGAATAAGAGCAAACCTATTTTTCTTAAGGAGTTGAAGAAAGTATGGGAAGGAAATGGAGTTGGAATTTTGAGGTCTTCCACACAATTTTGTTCATCCAATACACTCTTAATTGACAACGAGCCTTACAAAGTTTTGTTGAATCCGGTCGGTATTCAACTCCAACTTTTGTTTTTTGTTTTTGTTTTTAAAAAAATACTTAGGTATTCCTTACATTCAAAAGAAATTATGTGTTCAGAAAGAGATTATAATAAGAATAGGTATAGTCTGAGTGATTGCTATTTATAGATTTTTTTTAATAAAAATTTTCTAACCTAACATCTGTGTCTACATTAAGAATTGTTTTTTTTGTTTTGATTGTGTTTGTATTATATATGCAGCCTAACACTGCTATATTCCCAAACGAGTACAAGGCAGATGATACTAACGACGATGCTTTAGGAGCTGGGAGTGAACTAAGACGTTTCCTTGAAAAAGTGGCCGACGCCAAAGATGTTTCTAATTTCATCAAACACAATCCATTTGGAAACCCACCCATTTCTCCACATCATCCTAATTGGGACTTTTATTCCAAAATCATTACTAGTTACAAGTAATAATTAGTACCTATATCATTTCCTTTTTTATTAATGTTAATTCACATGCAATATGCTTAACTTATGAACTCAGTAGTTTCTTTTGGTAAGTTTGGAATTTCGTGATCATCTATTCTGCTTATTTTATTTAGTAGTATCAACGAACATGTTTTCTCTCCGTATATAGAAGATTGCTGCATGAGGTTGAGGCTTCAAATTAAGATGGGTTATTTTGTTATGTTTATATTTGGTGTTCTTCCATGGAGTGATATGATACGCATGAGGGTGTGGATAAATGGAATGTTCCCATGAAGACGTGCATGAGTGTAGTCATGAGCAACAAAGAATGTAGGTTTAGATTAAATGTAACTGTGACATGTTTGGAAGGGTCTTTAAAAGAGTTTTAATGAAATCTAATTTTGATATAGCAATTTTAAGACAATCAGAAATCAATTTCTTGATGTTTGAAAATAGTTTTAAAACATATTTAATTGTTTGATGTTAATTTAAGCCATGACAATCATGGTTGGTTTTTGGTCTTTAGTAGTTTCTGCATATTTATAAGATTATATAAACACCAATTGCATCAATTAAGTATTTTTTTTACCCATTTTATTCCATGTGTTGTGTGCAAAATCACTGACTATAGTTAGTATAGTATTTTGTCCTAGAGATTGAAGTAAGACTTTCATCCTATCATTGTTGCATTGAAGAAAACATTCAATAAAATATGAATCAATTTTATGAAAAAAAAATCCAAAACATTAAATATATGTGTACGTAATTATTGAAAAAAAAAATGGAATTCTCAAAATCTACAAATACCACGAACGAATATAGATTCTACTTTAAATTGTTGTAAGATAAATCACAAAATGTAGTTTTTACTATTAGTTTATTTTCGTTTTTTTTTTTCCAGAAAACTTATTGTCTATCAACCATTCACTATATAACTTTGAATTTACATGTTTACGTGAAAATTATTATTATACATCTTAACCAATTTTATTAAGAAAACAAAATTAAGATTTATTAATAACTAAAATTTAGCAGCATAAACTAAAGCAAGCCCCAAAATATTTGATTAAAATGGGATTTTAGCTTTAGAATTATTAATATAATTTTGGATAATAGTAAAAAATACAACATTTTCACAAAATATTTACCCTTTGTATATTTTGGGCCGAGGATGTGATATGGGCCAACCTAATGGCCTAGAGTTATGTTTTGTAAAGGGCCCATATTGTAGTTTTAACTACATTTCGTCGCTGACGATCTAA ATGGCAGAATCATCATCATCCATCAAAAACAAAGCTGGTGCAAGCAAATGCAGCAGCGACGAAGAAGAAAAAGTTGGAAACATTGATCTGGGGTTGTCAATGAAAAACTTGAGTCTTGGCCCAAAAAAGAAGCTTTTGATTATGGGAATCGGTGGATTTCTTTGTCACAGAGTCTGTTATCGTTACGGCAGACAAAAGATCCCAACACATCGTCTTCCTGATGCATCCTATGGCAGTTTCTATGTTTACAAGAGACCGTTCTGTGAGGACTTTATGAAGTTCTGCTTAGAGAGGTTTGAAGTTGGTATATGGTCTTCAGCAAAAGAATGGTACTTGGACAGTGCCTTGGATTCTATAATGCATGGATTGAGAAGCAGACTTCTATTTGCATGGGATCAAGGGGAGTGCACAAAGACCTGTTTCTTTGACTTGGAGAATAAGAGCAAACCTATTTTTCTTAAGGAGTTGAAGAAAGTATGGGAAGGAAATGGAGTTGGAATTTTGAGGTCTTCCACACAATTTTGTTCATCCAATACACTCTTAATTGACAACGAGCCTTACAAAGTTTTGTTGAATCCGCCTAACACTGCTATATTCCCAAACGAGTACAAGGCAGATGATACTAACGACGATGCTTTAGGAGCTGGGAGTGAACTAAGACGTTTCCTTGAAAAAGTGGCCGACGCCAAAGATGTTTCTAATTTCATCAAACACAATCCATTTGGAAACCCACCCATTTCTCCACATCATCCTAATTGGGACTTTTATTCCAAAATCATTACTAGTTACAATATCAACGAACATGTTTTCTCTCCGTATATAGAAGATTGCTGCATGAGGTTGAGGCTTCAAATTAAGATGGTAAAAAATACAACATTTTCACAAAATATTTACCCTTTGTATATTTTGGGCCGAGGATGTGATATGGGCCAACCTAATGGCCTAGAGTTATGTTTTGTAAAGGGCCCATATTGTAGTTTTAACTACATTTCGTCGCTGACGATCTAA ATGGCAGAATCATCATCATCCATCAAAAACAAAGCTGGTGCAAGCAAATGCAGCAGCGACGAAGAAGAAAAAGTTGGAAACATTGATCTGGGGTTGTCAATGAAAAACTTGAGTCTTGGCCCAAAAAAGAAGCTTTTGATTATGGGAATCGGTGGATTTCTTTGTCACAGAGTCTGTTATCGTTACGGCAGACAAAAGATCCCAACACATCGTCTTCCTGATGCATCCTATGGCAGTTTCTATGTTTACAAGAGACCGTTCTGTGAGGACTTTATGAAGTTCTGCTTAGAGAGGTTTGAAGTTGGTATATGGTCTTCAGCAAAAGAATGGTACTTGGACAGTGCCTTGGATTCTATAATGCATGGATTGAGAAGCAGACTTCTATTTGCATGGGATCAAGGGGAGTGCACAAAGACCTGTTTCTTTGACTTGGAGAATAAGAGCAAACCTATTTTTCTTAAGGAGTTGAAGAAAGTATGGGAAGGAAATGGAGTTGGAATTTTGAGGTCTTCCACACAATTTTGTTCATCCAATACACTCTTAATTGACAACGAGCCTTACAAAGTTTTGTTGAATCCGCCTAACACTGCTATATTCCCAAACGAGTACAAGGCAGATGATACTAACGACGATGCTTTAGGAGCTGGGAGTGAACTAAGACGTTTCCTTGAAAAAGTGGCCGACGCCAAAGATGTTTCTAATTTCATCAAACACAATCCATTTGGAAACCCACCCATTTCTCCACATCATCCTAATTGGGACTTTTATTCCAAAATCATTACTAGTTACAATATCAACGAACATGTTTTCTCTCCGTATATAGAAGATTGCTGCATGAGGTTGAGGCTTCAAATTAAGATGGTAAAAAATACAACATTTTCACAAAATATTTACCCTTTGTATATTTTGGGCCGAGGATGTGATATGGGCCAACCTAATGGCCTAGAGTTATGTTTTGTAAAGGGCCCATATTGTAGTTTTAACTACATTTCGTCGCTGACGATCTAA MAESSSSIKNKAGASKCSSDEEEKVGNIDLGLSMKNLSLGPKKKLLIMGIGGFLCHRVCYRYGRQKIPTHRLPDASYGSFYVYKRPFCEDFMKFCLERFEVGIWSSAKEWYLDSALDSIMHGLRSRLLFAWDQGECTKTCFFDLENKSKPIFLKELKKVWEGNGVGILRSSTQFCSSNTLLIDNEPYKVLLNPPNTAIFPNEYKADDTNDDALGAGSELRRFLEKVADAKDVSNFIKHNPFGNPPISPHHPNWDFYSKIITSYNINEHVFSPYIEDCCMRLRLQIKMVKNTTFSQNIYPLYILGRGCDMGQPNGLELCFVKGPYCSFNYISSLTI* Homology
BLAST of CsaV3_6G040360 vs. NCBI nr
Match: KAE8647415.1 (hypothetical protein Csa_003399 [Cucumis sativus]) HSP 1 Score: 708.8 bits (1828), Expect = 2.3e-200 Identity = 335/335 (100.00%), Postives = 335/335 (100.00%), Query Frame = 0
BLAST of CsaV3_6G040360 vs. NCBI nr
Match: XP_004143298.2 (uncharacterized protein LOC101207591 [Cucumis sativus]) HSP 1 Score: 552.7 bits (1423), Expect = 2.1e-153 Identity = 263/263 (100.00%), Postives = 263/263 (100.00%), Query Frame = 0
BLAST of CsaV3_6G040360 vs. NCBI nr
Match: TYK07373.1 (Haloacid dehalogenase-like hydrolase superfamily protein, putative isoform 1 [Cucumis melo var. makuwa]) HSP 1 Score: 464.5 bits (1194), Expect = 7.6e-127 Identity = 226/263 (85.93%), Postives = 241/263 (91.63%), Query Frame = 0
BLAST of CsaV3_6G040360 vs. NCBI nr
Match: KAA0025295.1 (Haloacid dehalogenase-like hydrolase superfamily protein, putative isoform 1 [Cucumis melo var. makuwa]) HSP 1 Score: 464.2 bits (1193), Expect = 9.9e-127 Identity = 227/269 (84.39%), Postives = 242/269 (89.96%), Query Frame = 0
BLAST of CsaV3_6G040360 vs. NCBI nr
Match: XP_022143931.1 (uncharacterized protein LOC111013724 [Momordica charantia]) HSP 1 Score: 358.6 bits (919), Expect = 5.8e-95 Identity = 180/268 (67.16%), Postives = 212/268 (79.10%), Query Frame = 0
BLAST of CsaV3_6G040360 vs. ExPASy Swiss-Prot
Match: O94336 (Uncharacterized FCP1 homology domain-containing protein C1271.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC1271.03c PE=4 SV=1) HSP 1 Score: 48.1 bits (113), Expect = 2.2e-04 Identity = 46/202 (22.77%), Postives = 84/202 (41.58%), Query Frame = 0
BLAST of CsaV3_6G040360 vs. ExPASy Swiss-Prot
Match: Q9XYL0 (Probable C-terminal domain small phosphatase OS=Dictyostelium discoideum OX=44689 GN=fcpA PE=3 SV=1) HSP 1 Score: 47.0 bits (110), Expect = 4.9e-04 Identity = 41/161 (25.47%), Postives = 71/161 (44.10%), Query Frame = 0
BLAST of CsaV3_6G040360 vs. ExPASy TrEMBL
Match: A0A0A0KHD9 (FCP1 homology domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G449850 PE=4 SV=1) HSP 1 Score: 552.7 bits (1423), Expect = 1.0e-153 Identity = 263/263 (100.00%), Postives = 263/263 (100.00%), Query Frame = 0
BLAST of CsaV3_6G040360 vs. ExPASy TrEMBL
Match: A0A5D3C640 (Haloacid dehalogenase-like hydrolase superfamily protein, putative isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G00930 PE=4 SV=1) HSP 1 Score: 464.5 bits (1194), Expect = 3.7e-127 Identity = 226/263 (85.93%), Postives = 241/263 (91.63%), Query Frame = 0
BLAST of CsaV3_6G040360 vs. ExPASy TrEMBL
Match: A0A5A7SLF5 (Haloacid dehalogenase-like hydrolase superfamily protein, putative isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold541G001490 PE=4 SV=1) HSP 1 Score: 464.2 bits (1193), Expect = 4.8e-127 Identity = 227/269 (84.39%), Postives = 242/269 (89.96%), Query Frame = 0
BLAST of CsaV3_6G040360 vs. ExPASy TrEMBL
Match: A0A6J1CRS6 (uncharacterized protein LOC111013724 OS=Momordica charantia OX=3673 GN=LOC111013724 PE=4 SV=1) HSP 1 Score: 358.6 bits (919), Expect = 2.8e-95 Identity = 180/268 (67.16%), Postives = 212/268 (79.10%), Query Frame = 0
BLAST of CsaV3_6G040360 vs. ExPASy TrEMBL
Match: W9SB01 (FCP1 homology domain-containing protein OS=Morus notabilis OX=981085 GN=L484_012801 PE=4 SV=1) HSP 1 Score: 313.9 bits (803), Expect = 8.0e-82 Identity = 145/263 (55.13%), Postives = 189/263 (71.86%), Query Frame = 0
BLAST of CsaV3_6G040360 vs. TAIR 10
Match: AT2G36540.1 (Haloacid dehalogenase-like hydrolase (HAD) superfamily protein ) HSP 1 Score: 183.7 bits (465), Expect = 2.4e-46 Identity = 112/263 (42.59%), Postives = 148/263 (56.27%), Query Frame = 0
BLAST of CsaV3_6G040360 vs. TAIR 10
Match: AT4G26190.1 (Haloacid dehalogenase-like hydrolase (HAD) superfamily protein ) HSP 1 Score: 180.3 bits (456), Expect = 2.7e-45 Identity = 90/221 (40.72%), Postives = 129/221 (58.37%), Query Frame = 0
BLAST of CsaV3_6G040360 vs. TAIR 10
Match: AT3G29760.1 (Haloacid dehalogenase-like hydrolase (HAD) superfamily protein ) HSP 1 Score: 121.7 bits (304), Expect = 1.1e-27 Identity = 72/199 (36.18%), Postives = 110/199 (55.28%), Query Frame = 0
BLAST of CsaV3_6G040360 vs. TAIR 10
Match: AT2G36550.1 (CONTAINS InterPro DOMAIN/s: NLI interacting factor (InterPro:IPR004274); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT2G36540.1); Has 91 Blast hits to 91 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 2; Other Eukaryotes - 2 (source: NCBI BLink). ) HSP 1 Score: 109.0 bits (271), Expect = 7.5e-24 Identity = 51/128 (39.84%), Postives = 74/128 (57.81%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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