CsaV3_6G040220 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G040220
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Threonine dehydratase
Location	chr6: 23208561 .. 23208898 (+)
RNA-Seq Expression	CsaV3_6G040220
Synteny	CsaV3_6G040220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGTTTGCAATAACAAATGGTTCAAATATCAATTTTAATCAACTTGATAGCATTGTTGATATTGCTGATGCTGCTAACCAAACTGAGGCTACTTCTGCAACCAAATTGCCTGAGAAACCTGCAACCTTGAGACGACAATTTTCTCACTTGGTAATTTTTTTTAAAAAAATTATAATCACACATTCTTCATCTATATATAATTAGTTAATTATTTAAACACCATCTATTTGTCATCATATTAATTAATTATTTTTTGCAGCTTCAACCTTGGAACATTATTACTGAATTTAAGTATAGATATATAACTCTGAAAGTGAGGTTGCTGTGCTTTATAG

mRNA sequence

ATGTTGTTTGCAATAACAAATGGTTCAAATATCAATTTTAATCAACTTGATAGCATTGTTGATATTGCTGATGCTGCTAACCAAACTGAGGCTACTTCTGCAACCAAATTGCCTGAGAAACCTGCAACCTTGAGACGACAATTTTCTCACTTGCTTCAACCTTGGAACATTATTACTGAATTTAAGTATAGATATATAACTCTGAAAGTGAGGTTGCTGTGCTTTATAG

Coding sequence (CDS)

ATGTTGTTTGCAATAACAAATGGTTCAAATATCAATTTTAATCAACTTGATAGCATTGTTGATATTGCTGATGCTGCTAACCAAACTGAGGCTACTTCTGCAACCAAATTGCCTGAGAAACCTGCAACCTTGAGACGACAATTTTCTCACTTGCTTCAACCTTGGAACATTATTACTGAATTTAAGTATAGATATATAACTCTGAAAGTGAGGTTGCTGTGCTTTATAG

Protein sequence

MLFAITNGSNINFNQLDSIVDIADAANQTEATSATKLPEKPATLRRQFSHLLQPWNIITEFKYRYITLKVRLLCFIX

Homology

[Close]

BLAST of CsaV3_6G040220 vs. NCBI nr
Match: KAE8647414.1 (hypothetical protein Csa_004049, partial [Cucumis sativus])

HSP 1 Score: 149.8 bits (377), Expect = 9.4e-33
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MLFAITNGSNINFNQLDSIVDIADAANQTEATSATKLPEKPATLRRQFSHLLQPWNIITE 60
          MLFAITNGSNINFNQLDSIVDIADAANQTEATSATKLPEKPATLRRQFSHLLQPWNIITE
Sbjct: 1  MLFAITNGSNINFNQLDSIVDIADAANQTEATSATKLPEKPATLRRQFSHLLQPWNIITE 60

Query: 61 FKYRYITLKVRLLCFI 77
          FKYRYITLKVRLLCFI
Sbjct: 61 FKYRYITLKVRLLCFI 76

[Close]

BLAST of CsaV3_6G040220 vs. NCBI nr
Match: XP_004143369.1 (threonine dehydratase biosynthetic, chloroplastic [Cucumis sativus] >KGN48214.1 hypothetical protein Csa_003609 [Cucumis sativus])

HSP 1 Score: 62.4 bits (150), Expect = 2.0e-06
Identity = 37/74 (50.00%), Postives = 52/74 (70.27%), Query Frame = 0


Query: 2   LFAITNGSNINFNQLDSIVDIADAANQTEATSATKLPEKPATLRRQFSHLLQPWNIITEF 61
           + A+T+G+N+NF+QL SI D AD+ NQTEAT AT LPEKP +L   FS L+     +TEF
Sbjct: 415 IVAVTSGANMNFDQLGSIADNADSGNQTEATFATILPEKPGSL-ITFSDLMGS-RSVTEF 474

Query: 62  KYRYITLKVRLLCF 76
           KYR+ + K  ++ +
Sbjct: 475 KYRFNSEKNAIVLY 486

[Close]

BLAST of CsaV3_6G040220 vs. NCBI nr
Match: CAA2970447.1 (threonine dehydratase biosynthetic, chloroplastic-like [Olea europaea subsp. europaea])

HSP 1 Score: 60.5 bits (145), Expect = 7.5e-06
Identity = 34/70 (48.57%), Postives = 48/70 (68.57%), Query Frame = 0


Query: 4   AITNGSNINFNQLDSIVDIADAANQTEATSATKLPEKPATLRRQFSHLLQPWNIITEFKY 63
           AIT+G+N+NF++L  + ++AD   Q EA  AT +PE+P + +R F  L+ P N ITEFKY
Sbjct: 400 AITSGANMNFDRLRLVTELADVGRQREAVLATYMPEEPGSFKR-FCELVGPMN-ITEFKY 459

Query: 64  RYITLKVRLL 74
           RY T K + L
Sbjct: 460 RYNTDKEKAL 467

[Close]

BLAST of CsaV3_6G040220 vs. NCBI nr
Match: XP_022863151.1 (threonine dehydratase biosynthetic, chloroplastic [Olea europaea var. sylvestris])

HSP 1 Score: 60.5 bits (145), Expect = 7.5e-06
Identity = 34/70 (48.57%), Postives = 48/70 (68.57%), Query Frame = 0


Query: 4   AITNGSNINFNQLDSIVDIADAANQTEATSATKLPEKPATLRRQFSHLLQPWNIITEFKY 63
           AIT+G+N+NF++L  + ++AD   Q EA  AT +PE+P + +R F  L+ P N ITEFKY
Sbjct: 400 AITSGANMNFDRLRLVTELADVGRQREAVLATYMPEEPGSFKR-FCELVGPMN-ITEFKY 459

Query: 64  RYITLKVRLL 74
           RY T K + L
Sbjct: 460 RYNTDKEKAL 467

[Close]

BLAST of CsaV3_6G040220 vs. NCBI nr
Match: CAA2970448.1 (threonine dehydratase biosynthetic, chloroplastic-like [Olea europaea subsp. europaea])

HSP 1 Score: 60.5 bits (145), Expect = 7.5e-06
Identity = 34/70 (48.57%), Postives = 48/70 (68.57%), Query Frame = 0


Query: 4   AITNGSNINFNQLDSIVDIADAANQTEATSATKLPEKPATLRRQFSHLLQPWNIITEFKY 63
           AIT+G+N+NF++L  + ++AD   Q EA  AT +PE+P + +R F  L+ P N ITEFKY
Sbjct: 245 AITSGANMNFDRLRLVTELADVGRQREAVLATYMPEEPGSFKR-FCELVGPMN-ITEFKY 304

Query: 64  RYITLKVRLL 74
           RY T K + L
Sbjct: 305 RYNTDKEKAL 312

[Close]

BLAST of CsaV3_6G040220 vs. ExPASy Swiss-Prot
Match: A0FKE6 (Threonine dehydratase 1 biosynthetic, chloroplastic OS=Solanum lycopersicum OX=4081 GN=TD1 PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 6.4e-08
Identity = 32/70 (45.71%), Postives = 48/70 (68.57%), Query Frame = 0


Query: 4   AITNGSNINFNQLDSIVDIADAANQTEATSATKLPEKPATLRRQFSHLLQPWNIITEFKY 63
           AIT+G+N+NF++L  + ++AD   Q EA  AT +PE P + ++ F+ ++ P N ITEFKY
Sbjct: 405 AITSGANMNFDRLRLVTELADVGRQREAVLATFMPEDPGSFKK-FAEMVGPMN-ITEFKY 464

Query: 64  RYITLKVRLL 74
           RY + K R L
Sbjct: 465 RYNSDKERAL 472

[Close]

BLAST of CsaV3_6G040220 vs. ExPASy Swiss-Prot
Match: Q9AXU4 (Threonine dehydratase OS=Nicotiana attenuata OX=49451 GN=TD PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.9e-07
Identity = 30/62 (48.39%), Postives = 44/62 (70.97%), Query Frame = 0


Query: 4   AITNGSNINFNQLDSIVDIADAANQTEATSATKLPEKPATLRRQFSHLLQPWNIITEFKY 63
           AI +G+N++F++L  +VD+AD   Q EA  AT +PE+P + ++ F  L+ P N ITEFKY
Sbjct: 400 AIASGANMDFSKLKLVVDLADIGGQREALLATFMPEEPGSFKK-FCELVGPMN-ITEFKY 459

Query: 64  RY 66
           RY
Sbjct: 460 RY 459

[Close]

BLAST of CsaV3_6G040220 vs. ExPASy Swiss-Prot
Match: Q9ZSS6 (Threonine dehydratase biosynthetic, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=OMR1 PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 5.4e-07
Identity = 29/61 (47.54%), Postives = 43/61 (70.49%), Query Frame = 0


Query: 4   AITNGSNINFNQLDSIVDIADAANQTEATSATKLPEKPATLRRQFSHLLQPWNIITEFKY 63
           AIT+G+N+NF++L  + ++A+   Q EA  AT +PEKP +  +QF  L+ P N I+EFKY
Sbjct: 392 AITSGANMNFDKLRIVTELANVGRQQEAVLATLMPEKPGSF-KQFCELVGPMN-ISEFKY 450

Query: 64  R 65
           R
Sbjct: 452 R 450

[Close]

BLAST of CsaV3_6G040220 vs. ExPASy TrEMBL
Match: A0A0A0KHC3 (Threonine dehydratase OS=Cucumis sativus OX=3659 GN=Csa_6G448720 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 9.6e-07
Identity = 37/74 (50.00%), Postives = 52/74 (70.27%), Query Frame = 0


Query: 2   LFAITNGSNINFNQLDSIVDIADAANQTEATSATKLPEKPATLRRQFSHLLQPWNIITEF 61
           + A+T+G+N+NF+QL SI D AD+ NQTEAT AT LPEKP +L   FS L+     +TEF
Sbjct: 415 IVAVTSGANMNFDQLGSIADNADSGNQTEATFATILPEKPGSL-ITFSDLMGS-RSVTEF 474

Query: 62  KYRYITLKVRLLCF 76
           KYR+ + K  ++ +
Sbjct: 475 KYRFNSEKNAIVLY 486

[Close]

BLAST of CsaV3_6G040220 vs. ExPASy TrEMBL
Match: A0A7N0TBQ6 (Threonine dehydratase OS=Kalanchoe fedtschenkoi OX=63787 PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.6e-06
Identity = 32/64 (50.00%), Postives = 45/64 (70.31%), Query Frame = 0


Query: 4   AITNGSNINFNQLDSIVDIADAANQTEATSATKLPEKPATLRRQFSHLLQPWNIITEFKY 63
           AIT+G+N+NFN+L  + ++AD   Q EA  AT +PE P + +R F+ ++ P N ITEFKY
Sbjct: 413 AITSGANMNFNRLRLVTELADVGRQQEAVLATTMPETPGSFKR-FAEMVGPIN-ITEFKY 472

Query: 64  RYIT 68
           RY T
Sbjct: 473 RYKT 474

[Close]

BLAST of CsaV3_6G040220 vs. ExPASy TrEMBL
Match: A0A7J7GL19 (Threonine dehydratase OS=Camellia sinensis OX=4442 GN=HYC85_022537 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 6.2e-06
Identity = 32/64 (50.00%), Postives = 45/64 (70.31%), Query Frame = 0


Query: 2   LFAITNGSNINFNQLDSIVDIADAANQTEATSATKLPEKPATLRRQFSHLLQPWNIITEF 61
           + AIT+G+N+NF++L  + ++AD   Q EA  AT LPE+P +  +QF  L+ P N ITEF
Sbjct: 551 IVAITSGANMNFDRLRLVTELADVGRQREAVLATLLPEEPGSF-KQFCELVGPMN-ITEF 610

Query: 62  KYRY 66
           KYRY
Sbjct: 611 KYRY 612

[Close]

BLAST of CsaV3_6G040220 vs. ExPASy TrEMBL
Match: A0A4V3WN11 (Threonine ammonia-lyase OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_025086 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 6.2e-06
Identity = 32/64 (50.00%), Postives = 45/64 (70.31%), Query Frame = 0


Query: 2   LFAITNGSNINFNQLDSIVDIADAANQTEATSATKLPEKPATLRRQFSHLLQPWNIITEF 61
           + AIT+G+N+NF++L  + ++AD   Q EA  AT LPE+P +  +QF  L+ P N ITEF
Sbjct: 575 IVAITSGANMNFDRLRLVTELADVGRQREAVLATLLPEEPGSF-KQFCELVGPMN-ITEF 634

Query: 62  KYRY 66
           KYRY
Sbjct: 635 KYRY 636

[Close]

BLAST of CsaV3_6G040220 vs. ExPASy TrEMBL
Match: A0A5J4ZDB6 (Threonine dehydratase OS=Nyssa sinensis OX=561372 GN=F0562_016859 PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 8.1e-06
Identity = 32/62 (51.61%), Postives = 44/62 (70.97%), Query Frame = 0


Query: 4   AITNGSNINFNQLDSIVDIADAANQTEATSATKLPEKPATLRRQFSHLLQPWNIITEFKY 63
           AIT+G+N+NF++L  + ++AD   Q EA  AT LPE+P + +R F  L+ P N ITEFKY
Sbjct: 408 AITSGANMNFDRLRLVTELADVGRQREAVLATFLPEEPGSFKR-FCELVGPMN-ITEFKY 467

Query: 64  RY 66
           RY
Sbjct: 468 RY 467

[Close]

BLAST of CsaV3_6G040220 vs. TAIR 10
Match: AT3G10050.1 (L-O-methylthreonine resistant 1 )

HSP 1 Score: 54.7 bits (130), Expect = 3.9e-08
Identity = 29/61 (47.54%), Postives = 43/61 (70.49%), Query Frame = 0


Query: 4   AITNGSNINFNQLDSIVDIADAANQTEATSATKLPEKPATLRRQFSHLLQPWNIITEFKY 63
           AIT+G+N+NF++L  + ++A+   Q EA  AT +PEKP +  +QF  L+ P N I+EFKY
Sbjct: 392 AITSGANMNFDKLRIVTELANVGRQQEAVLATLMPEKPGSF-KQFCELVGPMN-ISEFKY 450

Query: 64  R 65
           R
Sbjct: 452 R 450

The following BLAST results are available for this feature:

BLAST of CsaV3_6G040220 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647414.1	9.4e-33	100.00	hypothetical protein Csa_004049, partial [Cucumis sativus]	[more]
XP_004143369.1	2.0e-06	50.00	threonine dehydratase biosynthetic, chloroplastic [Cucumis sativus] >KGN48214.1 ...	[more]
CAA2970447.1	7.5e-06	48.57	threonine dehydratase biosynthetic, chloroplastic-like [Olea europaea subsp. eur...	[more]
XP_022863151.1	7.5e-06	48.57	threonine dehydratase biosynthetic, chloroplastic [Olea europaea var. sylvestris...	[more]
CAA2970448.1	7.5e-06	48.57	threonine dehydratase biosynthetic, chloroplastic-like [Olea europaea subsp. eur...	[more]

BLAST of CsaV3_6G040220 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A0FKE6	6.4e-08	45.71	Threonine dehydratase 1 biosynthetic, chloroplastic OS=Solanum lycopersicum OX=4...	[more]
Q9AXU4	1.9e-07	48.39	Threonine dehydratase OS=Nicotiana attenuata OX=49451 GN=TD PE=1 SV=1	[more]
Q9ZSS6	5.4e-07	47.54	Threonine dehydratase biosynthetic, chloroplastic OS=Arabidopsis thaliana OX=370...	[more]

BLAST of CsaV3_6G040220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KHC3	9.6e-07	50.00	Threonine dehydratase OS=Cucumis sativus OX=3659 GN=Csa_6G448720 PE=3 SV=1	[more]
A0A7N0TBQ6	3.6e-06	50.00	Threonine dehydratase OS=Kalanchoe fedtschenkoi OX=63787 PE=3 SV=1	[more]
A0A7J7GL19	6.2e-06	50.00	Threonine dehydratase OS=Camellia sinensis OX=4442 GN=HYC85_022537 PE=3 SV=1	[more]
A0A4V3WN11	6.2e-06	50.00	Threonine ammonia-lyase OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_0250...	[more]
A0A5J4ZDB6	8.1e-06	51.61	Threonine dehydratase OS=Nyssa sinensis OX=561372 GN=F0562_016859 PE=3 SV=1	[more]

BLAST of CsaV3_6G040220 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G10050.1	3.9e-08	47.54	L-O-methylthreonine resistant 1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001721	Threonine dehydratase, ACT-like domain	PFAM	PF00585	Thr_dehydrat_C	coord: 25..65 e-value: 6.0E-7 score: 29.2

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G040220.1	CsaV3_6G040220.1	mRNA