CsaV3_6G039370 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G039370
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6: 22624971 .. 22627263 (+)
RNA-Seq ExpressionCsaV3_6G039370
SyntenyCsaV3_6G039370
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTCCCTCTTTCTTATTATTTTGTCATTCTTCTTCTTCTTCTTCTTCTTCTCAACAATTTAATTTGGATCTTTTCTTCCTTCTCTCCCATTTTAATTTCTTCTTCTCCTCTTTATTAGAGTTGTGTATATATATATAAAAGAATTCTTGTAAAAATTGCTTCCCCATATTTGAGATCTTCTGTGTCATGGAGATCGTCAACTTTATGACAACTATGTTCTTCCTCTTTCTCCTTGCTGCTACCCCTTCACTGTCTTCTTCTAAAGGTATATATTATTCATGCATGATGATATTTTTAAATTAGAATGAATTATAATATAATTTGAATTTGAATTTAAATTTTGATGTTGTGTAGGTAGAGCATCTGAAAACAGTAATGGTGGGATAGATGATATTGTTTACGAAATAGATTATAGAGGACCAGAAACTCATTCATCTCATCATATATCTCCACCTGATCACTCCCATGGAAGAAGGCCTTGGATTATTCATCATCATCGTCATCAACTTCTTCAACCCAAACAACCCAATTCTCTCGATCCTACTCCTCATCCATAAACCACACACAATTGAAGGTTCTATCTTCTTCTTTTTTCCCCTCAAAGTTTCCACTTACCAGCTTGTTTTTTTCCTCCATTTATTAGCTTAGCTAGGAATGGTTTCTCAATTTTTTAAAAGAAAAATAACAATGGTTTTGGTTTGGTTTTTGAAAAAGTATAAGAGTTGGATGAGTTCTTCATTTTTGTTGATTTTGATTTTGGTTCTTAAAAAATTGTCCCAAAAATCATATAATTCATTTGACCTATGGATGTGCTGCTAGCTTTTGATAGAGTTGAACATGACCGAATTGATCGAACTAAAAGTGGTTGATCATAGATAAAGGAAAGATTGGTTTTATAAAAAAAAATATAAACCAACAACTCTTTTATAAAAAAAATTAAAGATTTATTTAACCTAAACAGATTGATGATCTACCGAAGATCAACCATCGATTTGCATTTCTTTTATCGAGATCAATTTAAACATTTGTTAGTTTTTGGTCGCCTTTCACCCAAAAAATCAAATTAAAATTGGTTAGAAATTTTGCAAACCATGCAATAAAATTAAAGTTTTTTTTCTTTTCTATTTTAAGTGTTTTCAAGAACATTAAAAAAATATTTTAAAATATAATAAAATAAACCAAAATATTTATAAAATATACTAAAAATAGAAGTTTATTGTTTCTATAATTAGTATTTGATATAATATAAAATTTTGTTATATTTTTTAAATAGTTTGGTCATTTACAATAATTTTTTGAATAATTATTATATAAAAAATATAACAAAAATTAAGAGAATGTAAAGGAAATCCAAACATACAAACATCCTATTTATTTTCTAAAGAAAAAAGAAAAAAAAAAGTGTAAAGGTTAGTAAATCTTTAAATATAAATCTAACCATAACATTATTGGTGGAGAAATATGTCTTTATCAAAATTTAATTAAGGTTCTCTTTTTGAGATCATTAATACATTGCAAAATTTTCAACCTCAAATCTTAAAGATGCAATAAAATATGTCATATCAATGTAATTAATAGATGAAGTTATTATATAACGATGACTAAAACATCAAACTTTTTTTCTGTGTTGATATAACAATTATGTGGACGGAAGAATAAAAAATTGATATATGATTATTATTTTCACACAAAAACATGTGACATAGAGATGATAATTAGCATATCAACAACACAATTAGCAAGAAGTAGGTAAGATGAATTGATTAGTAATGATTAAGTTTTTCTTTAAAAGAGTTGTTTAATTTCATGAATATTTTCTTCACACTACATAATAAAATAAAATAAAAGATGATGTTTATATTTAGTTTTCCAATTATTGTGTTTACTTGTGCAGGGAAGCAAAGTGGGTGAATGGTTAAAGAAGTTTTGGAATTAAAGCAATGTTTCAATCTGTTTAAAAATTAAATCAATTAAATTTAATGAACTTAGAGATATATCCTCTTTTTCTTTTCTTAATTATAATTTTGTACATGTCTTACCATAAAATGTAATGTAGTGTGTGCAATTTACTCTTGTTGTTAAGTTTGTAAGTGCTTTTAGAGAACTCAATTTATTTTATCACATAATACATTATTTTAATTCGTGTGTGCTTTTACAATTATTTACTATTGTTTTTGGATGCTATGTATATTTTCTCGAAGCAACTCAATTCGAACGACTCAAACTTTTTATTTGAAGTTAAAAATAAGGTAACAAGAAGGAATACTAGAAACTCCCTTTATGTATCAAATAG

mRNA sequence

ATGGAGATCGTCAACTTTATGACAACTATGTTCTTCCTCTTTCTCCTTGCTGCTACCCCTTCACTGTCTTCTTCTAAAGGTAGAGCATCTGAAAACAGTAATGGTGGGATAGATGATATTGTTTACGAAATAGATTATAGAGGACCAGAAACTCATTCATCTCATCATATATCTCCACCTGATCACTCCCATGGAAGAAGGCCTTGGATTATTCATCATCATCGTCATCAACTTCTTCAACCCAAACAACCCAATTCTCTCGATCCTACTCCTCATCCATAA

Coding sequence (CDS)

ATGGAGATCGTCAACTTTATGACAACTATGTTCTTCCTCTTTCTCCTTGCTGCTACCCCTTCACTGTCTTCTTCTAAAGGTAGAGCATCTGAAAACAGTAATGGTGGGATAGATGATATTGTTTACGAAATAGATTATAGAGGACCAGAAACTCATTCATCTCATCATATATCTCCACCTGATCACTCCCATGGAAGAAGGCCTTGGATTATTCATCATCATCGTCATCAACTTCTTCAACCCAAACAACCCAATTCTCTCGATCCTACTCCTCATCCATAA

Protein sequence

MEIVNFMTTMFFLFLLAATPSLSSSKGRASENSNGGIDDIVYEIDYRGPETHSSHHISPPDHSHGRRPWIIHHHRHQLLQPKQPNSLDPTPHP*
Homology
BLAST of CsaV3_6G039370 vs. NCBI nr
Match: KGN48132.1 (hypothetical protein Csa_003970 [Cucumis sativus])

HSP 1 Score: 194.5 bits (493), Expect = 4.1e-46
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0

Query: 1  MEIVNFMTTMFFLFLLAATPSLSSSKGRASENSNGGIDDIVYEIDYRGPETHSSHHISPP 60
          MEIVNFMTTMFFLFLLAATPSLSSSKGRASENSNGGIDDIVYEIDYRGPETHSSHHISPP
Sbjct: 1  MEIVNFMTTMFFLFLLAATPSLSSSKGRASENSNGGIDDIVYEIDYRGPETHSSHHISPP 60

Query: 61 DHSHGRRPWIIHHHRHQLLQPKQPNSLDPTPHP 94
          DHSHGRRPWIIHHHRHQLLQPKQPNSLDPTPHP
Sbjct: 61 DHSHGRRPWIIHHHRHQLLQPKQPNSLDPTPHP 93

BLAST of CsaV3_6G039370 vs. NCBI nr
Match: KAA0047279.1 (putative transmembrane protein [Cucumis melo var. makuwa])

HSP 1 Score: 149.8 bits (377), Expect = 1.2e-32
Identity = 79/103 (76.70%), Postives = 85/103 (82.52%), Query Frame = 0

Query: 1   MEIVNFMTTMFFLFLLAATPSLSSSKGRASENSNGGID-----------DIVYEIDYRGP 60
           MEIVNFMTTMFFLFLL ATPS++SS+G +SE +NGGID           D VYEIDYRGP
Sbjct: 1   MEIVNFMTTMFFLFLL-ATPSMASSEGGSSEYNNGGIDDDDSSSSSRRYDSVYEIDYRGP 60

Query: 61  ETHSSHHISPPDHSHGRRPWIIHHHRHQLLQPK-QPNSLDPTP 92
           ETHSSHHISPPDHSHGRRPWIIHHH HQLLQPK Q NSL+PTP
Sbjct: 61  ETHSSHHISPPDHSHGRRPWIIHHHHHQLLQPKQQTNSLNPTP 102

BLAST of CsaV3_6G039370 vs. NCBI nr
Match: XP_038881428.1 (uncharacterized protein LOC120072958 [Benincasa hispida])

HSP 1 Score: 100.5 bits (249), Expect = 8.0e-18
Identity = 66/98 (67.35%), Postives = 72/98 (73.47%), Query Frame = 0

Query: 1  MEIVNFMTTMFFLFLLAATPSLSSSKGRASEN-----SNGGIDDIVYEIDYRGPETHSSH 60
          ME+++FM TMFFLFLL ATPSLSS KG  SEN     S+      VYEIDYRGPETHSS 
Sbjct: 1  MEMISFM-TMFFLFLL-ATPSLSSPKG-GSENGEMDFSSSSSSSEVYEIDYRGPETHSS- 60

Query: 61 HISPPDHSHGRRPWIIHHHRHQLLQPKQPNSLDPTPHP 94
          HISPPDHSHG RPWI HH +HQ LQPKQP    P P+P
Sbjct: 61 HISPPDHSHG-RPWINHHDQHQ-LQPKQP-PFKPDPYP 91

BLAST of CsaV3_6G039370 vs. NCBI nr
Match: XP_022143835.1 (uncharacterized protein LOC111013652 [Momordica charantia])

HSP 1 Score: 89.4 bits (220), Expect = 1.8e-14
Identity = 56/93 (60.22%), Postives = 64/93 (68.82%), Query Frame = 0

Query: 1  MEIVN-FMTTMFFLFLLAATPSLSSSKGRASENSNGGIDDIVYEIDYRGPETHSSHHISP 60
          MEI +  + T FFLFL+ ATPS+SSSKG  SEN    I   VYEIDYRGPETHSSH   P
Sbjct: 1  MEITSPIIITFFFLFLILATPSISSSKG-GSENGAMEISSEVYEIDYRGPETHSSHFSPP 60

Query: 61 PDHSHGRRPWIIHHHRHQLLQPKQPNSLDPTPH 93
            HSHG RPWIIHH      QPK  +SL+P+P+
Sbjct: 61 DHHSHG-RPWIIHH------QPKL-HSLNPSPN 84

BLAST of CsaV3_6G039370 vs. NCBI nr
Match: XP_022925989.1 (uncharacterized protein LOC111433241 [Cucurbita moschata] >KAG7034582.1 hypothetical protein SDJN02_04312 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 82.8 bits (203), Expect = 1.7e-12
Identity = 51/83 (61.45%), Postives = 56/83 (67.47%), Query Frame = 0

Query: 4  VNFMTTMFFLFLLAATPSL--SSSKGRASENSNGGIDDIVYEIDYRGPETHSSHHISPPD 63
          ++F TT+FF+FLL  TPS    SS    SEN   G    VYEIDYRGPETHSS HISPP 
Sbjct: 3  MSFTTTVFFIFLL-LTPSFCCCSSYEGGSENGGMGSSSEVYEIDYRGPETHSS-HISPPH 62

Query: 64 HSHGRRPWIIHHHRHQLLQPKQP 85
          HSHG RPWI+ HHRH L  P  P
Sbjct: 63 HSHG-RPWIV-HHRHPLHPPPYP 81

BLAST of CsaV3_6G039370 vs. ExPASy TrEMBL
Match: A0A0A0KIB6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G444970 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 2.0e-46
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0

Query: 1  MEIVNFMTTMFFLFLLAATPSLSSSKGRASENSNGGIDDIVYEIDYRGPETHSSHHISPP 60
          MEIVNFMTTMFFLFLLAATPSLSSSKGRASENSNGGIDDIVYEIDYRGPETHSSHHISPP
Sbjct: 1  MEIVNFMTTMFFLFLLAATPSLSSSKGRASENSNGGIDDIVYEIDYRGPETHSSHHISPP 60

Query: 61 DHSHGRRPWIIHHHRHQLLQPKQPNSLDPTPHP 94
          DHSHGRRPWIIHHHRHQLLQPKQPNSLDPTPHP
Sbjct: 61 DHSHGRRPWIIHHHRHQLLQPKQPNSLDPTPHP 93

BLAST of CsaV3_6G039370 vs. ExPASy TrEMBL
Match: A0A5A7U1B9 (Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G00720 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 5.6e-33
Identity = 79/103 (76.70%), Postives = 85/103 (82.52%), Query Frame = 0

Query: 1   MEIVNFMTTMFFLFLLAATPSLSSSKGRASENSNGGID-----------DIVYEIDYRGP 60
           MEIVNFMTTMFFLFLL ATPS++SS+G +SE +NGGID           D VYEIDYRGP
Sbjct: 1   MEIVNFMTTMFFLFLL-ATPSMASSEGGSSEYNNGGIDDDDSSSSSRRYDSVYEIDYRGP 60

Query: 61  ETHSSHHISPPDHSHGRRPWIIHHHRHQLLQPK-QPNSLDPTP 92
           ETHSSHHISPPDHSHGRRPWIIHHH HQLLQPK Q NSL+PTP
Sbjct: 61  ETHSSHHISPPDHSHGRRPWIIHHHHHQLLQPKQQTNSLNPTP 102

BLAST of CsaV3_6G039370 vs. ExPASy TrEMBL
Match: A0A6J1CPX6 (uncharacterized protein LOC111013652 OS=Momordica charantia OX=3673 GN=LOC111013652 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 9.0e-15
Identity = 56/93 (60.22%), Postives = 64/93 (68.82%), Query Frame = 0

Query: 1  MEIVN-FMTTMFFLFLLAATPSLSSSKGRASENSNGGIDDIVYEIDYRGPETHSSHHISP 60
          MEI +  + T FFLFL+ ATPS+SSSKG  SEN    I   VYEIDYRGPETHSSH   P
Sbjct: 1  MEITSPIIITFFFLFLILATPSISSSKG-GSENGAMEISSEVYEIDYRGPETHSSHFSPP 60

Query: 61 PDHSHGRRPWIIHHHRHQLLQPKQPNSLDPTPH 93
            HSHG RPWIIHH      QPK  +SL+P+P+
Sbjct: 61 DHHSHG-RPWIIHH------QPKL-HSLNPSPN 84

BLAST of CsaV3_6G039370 vs. ExPASy TrEMBL
Match: A0A6J1EDR4 (uncharacterized protein LOC111433241 OS=Cucurbita moschata OX=3662 GN=LOC111433241 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 8.4e-13
Identity = 51/83 (61.45%), Postives = 56/83 (67.47%), Query Frame = 0

Query: 4  VNFMTTMFFLFLLAATPSL--SSSKGRASENSNGGIDDIVYEIDYRGPETHSSHHISPPD 63
          ++F TT+FF+FLL  TPS    SS    SEN   G    VYEIDYRGPETHSS HISPP 
Sbjct: 3  MSFTTTVFFIFLL-LTPSFCCCSSYEGGSENGGMGSSSEVYEIDYRGPETHSS-HISPPH 62

Query: 64 HSHGRRPWIIHHHRHQLLQPKQP 85
          HSHG RPWI+ HHRH L  P  P
Sbjct: 63 HSHG-RPWIV-HHRHPLHPPPYP 81

BLAST of CsaV3_6G039370 vs. ExPASy TrEMBL
Match: A0A6J1IQ06 (uncharacterized protein LOC111478885 OS=Cucurbita maxima OX=3661 GN=LOC111478885 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 9.3e-12
Identity = 48/82 (58.54%), Postives = 54/82 (65.85%), Query Frame = 0

Query: 4  VNFMTTMFFLFLLAATPSLSSSKGRASENSNGGI-DDIVYEIDYRGPETHSSHHISPPDH 63
          ++F TT+FFLFLL  TPS          + NGG+    VYEIDYRGPETHSS HISPP  
Sbjct: 3  MSFTTTVFFLFLL-LTPSFCCCSSSEGGSENGGLGSSQVYEIDYRGPETHSS-HISPPHP 62

Query: 64 SHGRRPWIIHHHRHQLLQPKQP 85
          SHG RPWI+HHH H L  P  P
Sbjct: 63 SHG-RPWIVHHH-HPLHPPPYP 80

BLAST of CsaV3_6G039370 vs. TAIR 10
Match: AT5G03120.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 14 Blast hits to 14 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.1 bits (105), Expect = 3.7e-05
Identity = 28/67 (41.79%), Postives = 38/67 (56.72%), Query Frame = 0

Query: 7  MTTMFFLFLLAATPSLSSSKGRASENSNGGIDDIVYEIDYRGPETHSSHHISPPDHSHGR 66
          M     ++LL A P  +    + SE +    D  VYEIDYRGPETH+S    PP+  HG+
Sbjct: 6  MMIFLIIYLLIAVPCFA----KGSEQT----DSEVYEIDYRGPETHNSR--PPPETMHGK 62

Query: 67 RPWIIHH 74
           P+I H+
Sbjct: 66 PPYIHHN 62

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN48132.14.1e-46100.00hypothetical protein Csa_003970 [Cucumis sativus][more]
KAA0047279.11.2e-3276.70putative transmembrane protein [Cucumis melo var. makuwa][more]
XP_038881428.18.0e-1867.35uncharacterized protein LOC120072958 [Benincasa hispida][more]
XP_022143835.11.8e-1460.22uncharacterized protein LOC111013652 [Momordica charantia][more]
XP_022925989.11.7e-1261.45uncharacterized protein LOC111433241 [Cucurbita moschata] >KAG7034582.1 hypothet... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KIB62.0e-46100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G444970 PE=4 SV=1[more]
A0A5A7U1B95.6e-3376.70Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
A0A6J1CPX69.0e-1560.22uncharacterized protein LOC111013652 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
A0A6J1EDR48.4e-1361.45uncharacterized protein LOC111433241 OS=Cucurbita moschata OX=3662 GN=LOC1114332... [more]
A0A6J1IQ069.3e-1258.54uncharacterized protein LOC111478885 OS=Cucurbita maxima OX=3661 GN=LOC111478885... [more]
Match NameE-valueIdentityDescription
AT5G03120.13.7e-0541.79unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 48..67
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 74..93
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 48..66

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G039370.1CsaV3_6G039370.1mRNA