CsaV3_6G039370 (gene) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.TTTCCCTCTTTCTTATTATTTTGTCATTCTTCTTCTTCTTCTTCTTCTTCTCAACAATTTAATTTGGATCTTTTCTTCCTTCTCTCCCATTTTAATTTCTTCTTCTCCTCTTTATTAGAGTTGTGTATATATATATAAAAGAATTCTTGTAAAAATTGCTTCCCCATATTTGAGATCTTCTGTGTCATGGAGATCGTCAACTTTATGACAACTATGTTCTTCCTCTTTCTCCTTGCTGCTACCCCTTCACTGTCTTCTTCTAAAGGTATATATTATTCATGCATGATGATATTTTTAAATTAGAATGAATTATAATATAATTTGAATTTGAATTTAAATTTTGATGTTGTGTAGGTAGAGCATCTGAAAACAGTAATGGTGGGATAGATGATATTGTTTACGAAATAGATTATAGAGGACCAGAAACTCATTCATCTCATCATATATCTCCACCTGATCACTCCCATGGAAGAAGGCCTTGGATTATTCATCATCATCGTCATCAACTTCTTCAACCCAAACAACCCAATTCTCTCGATCCTACTCCTCATCCATAAACCACACACAATTGAAGGTTCTATCTTCTTCTTTTTTCCCCTCAAAGTTTCCACTTACCAGCTTGTTTTTTTCCTCCATTTATTAGCTTAGCTAGGAATGGTTTCTCAATTTTTTAAAAGAAAAATAACAATGGTTTTGGTTTGGTTTTTGAAAAAGTATAAGAGTTGGATGAGTTCTTCATTTTTGTTGATTTTGATTTTGGTTCTTAAAAAATTGTCCCAAAAATCATATAATTCATTTGACCTATGGATGTGCTGCTAGCTTTTGATAGAGTTGAACATGACCGAATTGATCGAACTAAAAGTGGTTGATCATAGATAAAGGAAAGATTGGTTTTATAAAAAAAAATATAAACCAACAACTCTTTTATAAAAAAAATTAAAGATTTATTTAACCTAAACAGATTGATGATCTACCGAAGATCAACCATCGATTTGCATTTCTTTTATCGAGATCAATTTAAACATTTGTTAGTTTTTGGTCGCCTTTCACCCAAAAAATCAAATTAAAATTGGTTAGAAATTTTGCAAACCATGCAATAAAATTAAAGTTTTTTTTCTTTTCTATTTTAAGTGTTTTCAAGAACATTAAAAAAATATTTTAAAATATAATAAAATAAACCAAAATATTTATAAAATATACTAAAAATAGAAGTTTATTGTTTCTATAATTAGTATTTGATATAATATAAAATTTTGTTATATTTTTTAAATAGTTTGGTCATTTACAATAATTTTTTGAATAATTATTATATAAAAAATATAACAAAAATTAAGAGAATGTAAAGGAAATCCAAACATACAAACATCCTATTTATTTTCTAAAGAAAAAAGAAAAAAAAAAGTGTAAAGGTTAGTAAATCTTTAAATATAAATCTAACCATAACATTATTGGTGGAGAAATATGTCTTTATCAAAATTTAATTAAGGTTCTCTTTTTGAGATCATTAATACATTGCAAAATTTTCAACCTCAAATCTTAAAGATGCAATAAAATATGTCATATCAATGTAATTAATAGATGAAGTTATTATATAACGATGACTAAAACATCAAACTTTTTTTCTGTGTTGATATAACAATTATGTGGACGGAAGAATAAAAAATTGATATATGATTATTATTTTCACACAAAAACATGTGACATAGAGATGATAATTAGCATATCAACAACACAATTAGCAAGAAGTAGGTAAGATGAATTGATTAGTAATGATTAAGTTTTTCTTTAAAAGAGTTGTTTAATTTCATGAATATTTTCTTCACACTACATAATAAAATAAAATAAAAGATGATGTTTATATTTAGTTTTCCAATTATTGTGTTTACTTGTGCAGGGAAGCAAAGTGGGTGAATGGTTAAAGAAGTTTTGGAATTAAAGCAATGTTTCAATCTGTTTAAAAATTAAATCAATTAAATTTAATGAACTTAGAGATATATCCTCTTTTTCTTTTCTTAATTATAATTTTGTACATGTCTTACCATAAAATGTAATGTAGTGTGTGCAATTTACTCTTGTTGTTAAGTTTGTAAGTGCTTTTAGAGAACTCAATTTATTTTATCACATAATACATTATTTTAATTCGTGTGTGCTTTTACAATTATTTACTATTGTTTTTGGATGCTATGTATATTTTCTCGAAGCAACTCAATTCGAACGACTCAAACTTTTTATTTGAAGTTAAAAATAAGGTAACAAGAAGGAATACTAGAAACTCCCTTTATGTATCAAATAG ATGGAGATCGTCAACTTTATGACAACTATGTTCTTCCTCTTTCTCCTTGCTGCTACCCCTTCACTGTCTTCTTCTAAAGGTAGAGCATCTGAAAACAGTAATGGTGGGATAGATGATATTGTTTACGAAATAGATTATAGAGGACCAGAAACTCATTCATCTCATCATATATCTCCACCTGATCACTCCCATGGAAGAAGGCCTTGGATTATTCATCATCATCGTCATCAACTTCTTCAACCCAAACAACCCAATTCTCTCGATCCTACTCCTCATCCATAA ATGGAGATCGTCAACTTTATGACAACTATGTTCTTCCTCTTTCTCCTTGCTGCTACCCCTTCACTGTCTTCTTCTAAAGGTAGAGCATCTGAAAACAGTAATGGTGGGATAGATGATATTGTTTACGAAATAGATTATAGAGGACCAGAAACTCATTCATCTCATCATATATCTCCACCTGATCACTCCCATGGAAGAAGGCCTTGGATTATTCATCATCATCGTCATCAACTTCTTCAACCCAAACAACCCAATTCTCTCGATCCTACTCCTCATCCATAA MEIVNFMTTMFFLFLLAATPSLSSSKGRASENSNGGIDDIVYEIDYRGPETHSSHHISPPDHSHGRRPWIIHHHRHQLLQPKQPNSLDPTPHP* Homology
BLAST of CsaV3_6G039370 vs. NCBI nr
Match: KGN48132.1 (hypothetical protein Csa_003970 [Cucumis sativus]) HSP 1 Score: 194.5 bits (493), Expect = 4.1e-46 Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0
BLAST of CsaV3_6G039370 vs. NCBI nr
Match: KAA0047279.1 (putative transmembrane protein [Cucumis melo var. makuwa]) HSP 1 Score: 149.8 bits (377), Expect = 1.2e-32 Identity = 79/103 (76.70%), Postives = 85/103 (82.52%), Query Frame = 0
BLAST of CsaV3_6G039370 vs. NCBI nr
Match: XP_038881428.1 (uncharacterized protein LOC120072958 [Benincasa hispida]) HSP 1 Score: 100.5 bits (249), Expect = 8.0e-18 Identity = 66/98 (67.35%), Postives = 72/98 (73.47%), Query Frame = 0
BLAST of CsaV3_6G039370 vs. NCBI nr
Match: XP_022143835.1 (uncharacterized protein LOC111013652 [Momordica charantia]) HSP 1 Score: 89.4 bits (220), Expect = 1.8e-14 Identity = 56/93 (60.22%), Postives = 64/93 (68.82%), Query Frame = 0
BLAST of CsaV3_6G039370 vs. NCBI nr
Match: XP_022925989.1 (uncharacterized protein LOC111433241 [Cucurbita moschata] >KAG7034582.1 hypothetical protein SDJN02_04312 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 82.8 bits (203), Expect = 1.7e-12 Identity = 51/83 (61.45%), Postives = 56/83 (67.47%), Query Frame = 0
BLAST of CsaV3_6G039370 vs. ExPASy TrEMBL
Match: A0A0A0KIB6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G444970 PE=4 SV=1) HSP 1 Score: 194.5 bits (493), Expect = 2.0e-46 Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0
BLAST of CsaV3_6G039370 vs. ExPASy TrEMBL
Match: A0A5A7U1B9 (Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G00720 PE=4 SV=1) HSP 1 Score: 149.8 bits (377), Expect = 5.6e-33 Identity = 79/103 (76.70%), Postives = 85/103 (82.52%), Query Frame = 0
BLAST of CsaV3_6G039370 vs. ExPASy TrEMBL
Match: A0A6J1CPX6 (uncharacterized protein LOC111013652 OS=Momordica charantia OX=3673 GN=LOC111013652 PE=4 SV=1) HSP 1 Score: 89.4 bits (220), Expect = 9.0e-15 Identity = 56/93 (60.22%), Postives = 64/93 (68.82%), Query Frame = 0
BLAST of CsaV3_6G039370 vs. ExPASy TrEMBL
Match: A0A6J1EDR4 (uncharacterized protein LOC111433241 OS=Cucurbita moschata OX=3662 GN=LOC111433241 PE=4 SV=1) HSP 1 Score: 82.8 bits (203), Expect = 8.4e-13 Identity = 51/83 (61.45%), Postives = 56/83 (67.47%), Query Frame = 0
BLAST of CsaV3_6G039370 vs. ExPASy TrEMBL
Match: A0A6J1IQ06 (uncharacterized protein LOC111478885 OS=Cucurbita maxima OX=3661 GN=LOC111478885 PE=4 SV=1) HSP 1 Score: 79.3 bits (194), Expect = 9.3e-12 Identity = 48/82 (58.54%), Postives = 54/82 (65.85%), Query Frame = 0
BLAST of CsaV3_6G039370 vs. TAIR 10
Match: AT5G03120.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 14 Blast hits to 14 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 45.1 bits (105), Expect = 3.7e-05 Identity = 28/67 (41.79%), Postives = 38/67 (56.72%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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