CsaV3_6G039000 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G039000
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6: 22361170 .. 22361506 (+)
RNA-Seq ExpressionCsaV3_6G039000
SyntenyCsaV3_6G039000
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTACAACAACTACAAGCCTCATTGAGAGAGAAGAAGGCCTGAGAATGCAGATATTGAGTGCTTTGAGATTATTAGTTGAACCAACCAAGGTAGATTGCAAGACAAGAATTTTCAGGTGATATTTAGATCTTTGGTGATGGAGAAGTTGGTCTCGTTGGTGAGCAGAAATGTATATTGACCATTCGCTGCGAAGGAAAGACTTTCTTTGGAATTATTCTAAATTCCAGAAAAATTGGCCTAAAATCTTTTAACTTTTTTAGGATCCAGAAGGCTGCAGCCGAGCAAGGCCAAACACAGTCTTCGGAGTTGGTTTGCACGGAAGATCGACGTTAA

mRNA sequence

ATGGCTACAACAACTACAAGCCTCATTGAGAGAGAAGAAGGCCTGAGAATGCAGATATTGAGTGCTTTGAGATTATTAGTTGAACCAACCAAGGTAGATTGCAAGACAAGAATTTTCAGGATCCAGAAGGCTGCAGCCGAGCAAGGCCAAACACAGTCTTCGGAGTTGGTTTGCACGGAAGATCGACGTTAA

Coding sequence (CDS)

ATGGCTACAACAACTACAAGCCTCATTGAGAGAGAAGAAGGCCTGAGAATGCAGATATTGAGTGCTTTGAGATTATTAGTTGAACCAACCAAGGTAGATTGCAAGACAAGAATTTTCAGGATCCAGAAGGCTGCAGCCGAGCAAGGCCAAACACAGTCTTCGGAGTTGGTTTGCACGGAAGATCGACGTTAA

Protein sequence

MATTTTSLIEREEGLRMQILSALRLLVEPTKVDCKTRIFRIQKAAAEQGQTQSSELVCTEDRR*
Homology
[Close]
BLAST of CsaV3_6G039000 vs. NCBI nr
Match: KGN48100.1 (hypothetical protein Csa_002886 [Cucumis sativus])

HSP 1 Score: 120.2 bits (300), Expect = 6.7e-24
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0 

Query: 1  MATTTTSLIEREEGLRMQILSALRLLVEPTKVDCKTRIFRIQKAAAEQGQTQSSELVCTE 60
          MATTTTSLIEREEGLRMQILSALRLLVEPTKVDCKTRIFRIQKAAAEQGQTQSSELVCTE
Sbjct: 1  MATTTTSLIEREEGLRMQILSALRLLVEPTKVDCKTRIFRIQKAAAEQGQTQSSELVCTE 60

Query: 61 DRR 64
          DRR
Sbjct: 61 DRR 63

[Close]
BLAST of CsaV3_6G039000 vs. ExPASy TrEMBL
Match: A0A0A0KEJ5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G431750 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 3.2e-24
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0 

Query: 1  MATTTTSLIEREEGLRMQILSALRLLVEPTKVDCKTRIFRIQKAAAEQGQTQSSELVCTE 60
          MATTTTSLIEREEGLRMQILSALRLLVEPTKVDCKTRIFRIQKAAAEQGQTQSSELVCTE
Sbjct: 1  MATTTTSLIEREEGLRMQILSALRLLVEPTKVDCKTRIFRIQKAAAEQGQTQSSELVCTE 60

Query: 61 DRR 64
          DRR
Sbjct: 61 DRR 63

The following BLAST results are available for this feature:
BLAST of CsaV3_6G039000 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN48100.16.7e-24100.00hypothetical protein Csa_002886 [Cucumis sativus][more]
BLAST of CsaV3_6G039000 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G039000 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KEJ53.2e-24100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G431750 PE=4 SV=1[more]
BLAST of CsaV3_6G039000 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G039000.1CsaV3_6G039000.1mRNA