CsaV3_6G038600 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G038600
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr6: 22023286 .. 22023444 (+)
RNA-Seq Expression	CsaV3_6G038600
Synteny	CsaV3_6G038600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGAGGAGGGAACACCTAGAGACTCAAATCTAAACTCAAGTGTTCACCGCGACGAAGCATCAGACAAAGGAGGGAACGTCGACAAAGCATCAGACGGAGGAGGACGGCGCTGTGAGACAACGATGGACGGATGGAGATGTTTTACGAGGGTTTGA

mRNA sequence

ATGGAGGAGGAGGGAACACCTAGAGACTCAAATCTAAACTCAAGTGTTCACCGCGACGAAGCATCAGACAAAGGAGGGAACGTCGACAAAGCATCAGACGGAGGAGGACGGCGCTGTGAGACAACGATGGACGGATGGAGATGTTTTACGAGGGTTTGA

Coding sequence (CDS)

ATGGAGGAGGAGGGAACACCTAGAGACTCAAATCTAAACTCAAGTGTTCACCGCGACGAAGCATCAGACAAAGGAGGGAACGTCGACAAAGCATCAGACGGAGGAGGACGGCGCTGTGAGACAACGATGGACGGATGGAGATGTTTTACGAGGGTTTGA

Protein sequence

MEEEGTPRDSNLNSSVHRDEASDKGGNVDKASDGGGRRCETTMDGWRCFTRV*

Homology

[Close]

BLAST of CsaV3_6G038600 vs. NCBI nr
Match: KGN48054.1 (hypothetical protein Csa_004197 [Cucumis sativus])

HSP 1 Score: 110.2 bits (274), Expect = 5.7e-21
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 1  MEEEGTPRDSNLNSSVHRDEASDKGGNVDKASDGGGRRCETTMDGWRCFTRV 53
          MEEEGTPRDSNLNSSVHRDEASDKGGNVDKASDGGGRRCETTMDGWRCFTRV
Sbjct: 1  MEEEGTPRDSNLNSSVHRDEASDKGGNVDKASDGGGRRCETTMDGWRCFTRV 52

[Close]

BLAST of CsaV3_6G038600 vs. ExPASy TrEMBL
Match: A0A0A0KGX8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G426890 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.8e-21
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 1  MEEEGTPRDSNLNSSVHRDEASDKGGNVDKASDGGGRRCETTMDGWRCFTRV 53
          MEEEGTPRDSNLNSSVHRDEASDKGGNVDKASDGGGRRCETTMDGWRCFTRV
Sbjct: 1  MEEEGTPRDSNLNSSVHRDEASDKGGNVDKASDGGGRRCETTMDGWRCFTRV 52

The following BLAST results are available for this feature:

BLAST of CsaV3_6G038600 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN48054.1	5.7e-21	100.00	hypothetical protein Csa_004197 [Cucumis sativus]	[more]

BLAST of CsaV3_6G038600 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G038600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KGX8	2.8e-21	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G426890 PE=4 SV=1	[more]

BLAST of CsaV3_6G038600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..44
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..37

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G038600.1	CsaV3_6G038600.1	mRNA