CsaV3_6G038520 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G038520
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	E2F_TDP domain-containing protein
Location	chr6: 21939003 .. 21939630 (-)
RNA-Seq Expression	CsaV3_6G038520
Synteny	CsaV3_6G038520

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAACAAACCCGTGAAGCAAAGGGATGAAATTTTCGTGAAGGTAGCACCTCCTTTGGACCAAGCATTTGTTAGATGGCTAGCTCGTGATCTCGAAAGGATTCATGGCTTCCCCCCGAGAAATCCCCGTGCCGTGAAGCCTCCCGATCACTACATAGAGTTCATGCGCTTGTATGGATGGTTGGACGTGAGCTTAGATGATCCAGATCTCGCACGTTTACTCAAATAGCCATGTCTTACAAACTCAAAACTGCATCATTGTGGACATCTATCCTCTATCTTCTTATAATGTTAGTTCAAACACTCTCCAACTGTCTTTGGAGGTAATCCAGTTTATGTCAATCAGTTGTCTGTTAGTAATTTCTGTCAACATGAAGTATGGAATAAAATTGTATGGTGTAGCCAAACCATTACCGAAATGGGATATTTGTAATGTCATTATTTACTTCATAAGTGAACTTAAAACAACTAAAGAAATTTACATTCTCTGCTAGTAAATTTTCTATTTCTTTTTACCGTTGGAAATATTTACAAAATATAATAAAATCTCAGTTTATATCAACAATTTATTGATTTAAATTTTTGTTATACTTTAGATGGGTAAAAAGTGGACAAAGAATATTTGA

mRNA sequence

ATGGGAAACAAACCCGTGAAGCAAAGGGATGAAATTTTCGTGAAGGTAGCACCTCCTTTGGACCAAGCATTTGTTAGATGGCTAGCTCGTGATCTCGAAAGGATTCATGGCTTCCCCCCGAGAAATCCCCGTGCCGTGAAGCCTCCCGATCACTACATAGAGTTCATGCGCTTGTATGGATGGTTGGACGTGAGCTTAGATGATCCAGATCTCGCACTAATTTCTGTCAACATGAAGTATGGAATAAAATTGTATGGTGTAGCCAAACCATTACCGAAATGGGATATTTGTAATATGGGTAAAAAGTGGACAAAGAATATTTGA

Coding sequence (CDS)

ATGGGAAACAAACCCGTGAAGCAAAGGGATGAAATTTTCGTGAAGGTAGCACCTCCTTTGGACCAAGCATTTGTTAGATGGCTAGCTCGTGATCTCGAAAGGATTCATGGCTTCCCCCCGAGAAATCCCCGTGCCGTGAAGCCTCCCGATCACTACATAGAGTTCATGCGCTTGTATGGATGGTTGGACGTGAGCTTAGATGATCCAGATCTCGCACTAATTTCTGTCAACATGAAGTATGGAATAAAATTGTATGGTGTAGCCAAACCATTACCGAAATGGGATATTTGTAATATGGGTAAAAAGTGGACAAAGAATATTTGA

Protein sequence

MGNKPVKQRDEIFVKVAPPLDQAFVRWLARDLERIHGFPPRNPRAVKPPDHYIEFMRLYGWLDVSLDDPDLALISVNMKYGIKLYGVAKPLPKWDICNMGKKWTKNI*

Homology

[Close]

BLAST of CsaV3_6G038520 vs. NCBI nr
Match: KAE8647364.1 (hypothetical protein Csa_003696 [Cucumis sativus])

HSP 1 Score: 238.8 bits (608), Expect = 2.2e-59
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MGNKPVKQRDEIFVKVAPPLDQAFVRWLARDLERIHGFPPRNPRAVKPPDHYIEFMRLYG 60
           MGNKPVKQRDEIFVKVAPPLDQAFVRWLARDLERIHGFPPRNPRAVKPPDHYIEFMRLYG
Sbjct: 1   MGNKPVKQRDEIFVKVAPPLDQAFVRWLARDLERIHGFPPRNPRAVKPPDHYIEFMRLYG 60

Query: 61  WLDVSLDDPDLALISVNMKYGIKLYGVAKPLPKWDICNMGKKWTKNI 108
           WLDVSLDDPDLALISVNMKYGIKLYGVAKPLPKWDICNMGKKWTKNI
Sbjct: 61  WLDVSLDDPDLALISVNMKYGIKLYGVAKPLPKWDICNMGKKWTKNI 107

[Close]

BLAST of CsaV3_6G038520 vs. NCBI nr
Match: XP_031743912.1 (uncharacterized protein LOC101220037 [Cucumis sativus])

HSP 1 Score: 161.0 bits (406), Expect = 5.7e-36
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1  MGNKPVKQRDEIFVKVAPPLDQAFVRWLARDLERIHGFPPRNPRAVKPPDHYIEFMRLYG 60
          MGNKPVKQRDEIFVKVAPPLDQAFVRWLARDLERIHGFPPRNPRAVKPPDHYIEFMRLYG
Sbjct: 1  MGNKPVKQRDEIFVKVAPPLDQAFVRWLARDLERIHGFPPRNPRAVKPPDHYIEFMRLYG 60

Query: 61 WLDVSLDDPDLA 73
          WLDVSLDDPDLA
Sbjct: 61 WLDVSLDDPDLA 72

[Close]

BLAST of CsaV3_6G038520 vs. NCBI nr
Match: XP_022152955.1 (uncharacterized protein LOC111020571 [Momordica charantia] >XP_022152956.1 uncharacterized protein LOC111020571 [Momordica charantia])

HSP 1 Score: 142.9 bits (359), Expect = 1.6e-30
Identity = 65/76 (85.53%), Postives = 69/76 (90.79%), Query Frame = 0


Query: 1  MGNKPVK----QRDEIFVKVAPPLDQAFVRWLARDLERIHGFPPRNPRAVKPPDHYIEFM 60
          MGNKPVK    QR+EIF+K+ PPLDQA+VRWLARDLERIHGF PRNPRAVKPPDHYIEFM
Sbjct: 1  MGNKPVKQQEVQREEIFLKIVPPLDQAYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFM 60

Query: 61 RLYGWLDVSLDDPDLA 73
          RL GWLDVSLDDPDLA
Sbjct: 61 RLNGWLDVSLDDPDLA 76

[Close]

BLAST of CsaV3_6G038520 vs. NCBI nr
Match: KAG6570469.1 (hypothetical protein SDJN03_29384, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 140.6 bits (353), Expect = 8.0e-30
Identity = 68/104 (65.38%), Postives = 80/104 (76.92%), Query Frame = 0


Query: 1   MGNKPVKQ---RDEIFVKVAPPLDQAFVRWLARDLERIHGFPPRNPRAVKPPDHYIEFMR 60
           MGNKP KQ   RDE+ +K+ PPLDQA++RWLARDLERIHGF PRNPRAVKPPDHYIEFMR
Sbjct: 1   MGNKPAKQSGGRDEM-LKIVPPLDQAYIRWLARDLERIHGFTPRNPRAVKPPDHYIEFMR 60

Query: 61  LYGWLDVSLDDPDLALISVNMKYGIKLYG---VAKPLPKWDICN 99
           L GWLDVSLDDPDLA   + M    +L+    +A+   + D+CN
Sbjct: 61  LNGWLDVSLDDPDLARFRLAMSDNEELWNKTVLAQLSHQTDVCN 103

[Close]

BLAST of CsaV3_6G038520 vs. NCBI nr
Match: KAA0061729.1 (uncharacterized protein E6C27_scaffold212G001040 [Cucumis melo var. makuwa])

HSP 1 Score: 139.4 bits (350), Expect = 1.8e-29
Identity = 61/73 (83.56%), Postives = 68/73 (93.15%), Query Frame = 0


Query: 1  MGNKPVKQ-RDEIFVKVAPPLDQAFVRWLARDLERIHGFPPRNPRAVKPPDHYIEFMRLY 60
          MGN+PVKQ ++E+F+K+ PPLDQ +VRWLARDLERIHGF PRNPRAVKPPDHYIEFMRL 
Sbjct: 1  MGNRPVKQPQEEVFLKIVPPLDQTYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFMRLN 60

Query: 61 GWLDVSLDDPDLA 73
          GWLDVSLDDPDLA
Sbjct: 61 GWLDVSLDDPDLA 73

[Close]

BLAST of CsaV3_6G038520 vs. ExPASy TrEMBL
Match: A0A0A0KJX9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G425830 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.8e-36
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1  MGNKPVKQRDEIFVKVAPPLDQAFVRWLARDLERIHGFPPRNPRAVKPPDHYIEFMRLYG 60
          MGNKPVKQRDEIFVKVAPPLDQAFVRWLARDLERIHGFPPRNPRAVKPPDHYIEFMRLYG
Sbjct: 1  MGNKPVKQRDEIFVKVAPPLDQAFVRWLARDLERIHGFPPRNPRAVKPPDHYIEFMRLYG 60

Query: 61 WLDVSLDDPDLA 73
          WLDVSLDDPDLA
Sbjct: 61 WLDVSLDDPDLA 72

[Close]

BLAST of CsaV3_6G038520 vs. ExPASy TrEMBL
Match: A0A6J1DJ99 (uncharacterized protein LOC111020571 OS=Momordica charantia OX=3673 GN=LOC111020571 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 7.8e-31
Identity = 65/76 (85.53%), Postives = 69/76 (90.79%), Query Frame = 0


Query: 1  MGNKPVK----QRDEIFVKVAPPLDQAFVRWLARDLERIHGFPPRNPRAVKPPDHYIEFM 60
          MGNKPVK    QR+EIF+K+ PPLDQA+VRWLARDLERIHGF PRNPRAVKPPDHYIEFM
Sbjct: 1  MGNKPVKQQEVQREEIFLKIVPPLDQAYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFM 60

Query: 61 RLYGWLDVSLDDPDLA 73
          RL GWLDVSLDDPDLA
Sbjct: 61 RLNGWLDVSLDDPDLA 76

[Close]

BLAST of CsaV3_6G038520 vs. ExPASy TrEMBL
Match: A0A5A7V7T4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold212G001040 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 8.7e-30
Identity = 61/73 (83.56%), Postives = 68/73 (93.15%), Query Frame = 0


Query: 1  MGNKPVKQ-RDEIFVKVAPPLDQAFVRWLARDLERIHGFPPRNPRAVKPPDHYIEFMRLY 60
          MGN+PVKQ ++E+F+K+ PPLDQ +VRWLARDLERIHGF PRNPRAVKPPDHYIEFMRL 
Sbjct: 1  MGNRPVKQPQEEVFLKIVPPLDQTYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFMRLN 60

Query: 61 GWLDVSLDDPDLA 73
          GWLDVSLDDPDLA
Sbjct: 61 GWLDVSLDDPDLA 73

[Close]

BLAST of CsaV3_6G038520 vs. ExPASy TrEMBL
Match: A0A061GZN3 (Uncharacterized protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_041290 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 2.5e-29
Identity = 61/74 (82.43%), Postives = 67/74 (90.54%), Query Frame = 0


Query: 1  MGNKPVK--QRDEIFVKVAPPLDQAFVRWLARDLERIHGFPPRNPRAVKPPDHYIEFMRL 60
          MGNKPVK  QR+EI +K+ PPLDQA+VRWLARD+ERIHGF PRNPRAVKPPDHYIE+MRL
Sbjct: 1  MGNKPVKQEQREEILLKIVPPLDQAYVRWLARDIERIHGFTPRNPRAVKPPDHYIEYMRL 60

Query: 61 YGWLDVSLDDPDLA 73
           GWLDV LDDPDLA
Sbjct: 61 NGWLDVDLDDPDLA 74

[Close]

BLAST of CsaV3_6G038520 vs. ExPASy TrEMBL
Match: A0A6J0ZWT3 (uncharacterized protein LOC110412594 OS=Herrania umbratica OX=108875 GN=LOC110412594 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 2.5e-29
Identity = 61/74 (82.43%), Postives = 67/74 (90.54%), Query Frame = 0


Query: 1  MGNKPVK--QRDEIFVKVAPPLDQAFVRWLARDLERIHGFPPRNPRAVKPPDHYIEFMRL 60
          MGNKPVK  QR+EI +K+ PPLDQA+VRWLARD+ERIHGF PRNPRAVKPPDHYIE+MRL
Sbjct: 1  MGNKPVKQEQREEILLKIVPPLDQAYVRWLARDIERIHGFTPRNPRAVKPPDHYIEYMRL 60

Query: 61 YGWLDVSLDDPDLA 73
           GWLDV LDDPDLA
Sbjct: 61 NGWLDVDLDDPDLA 74

[Close]

BLAST of CsaV3_6G038520 vs. TAIR 10
Match: AT5G22210.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 106.7 bits (265), Expect = 1.2e-23
Identity = 49/76 (64.47%), Postives = 60/76 (78.95%), Query Frame = 0


Query: 1  MGNKPV---KQRDEIFVKVAPPLDQAFVRWLARDLERIHGFPPR-NPRAVKPPDHYIEFM 60
          MGNK     ++R+EI +K+ PPLD+ F+RWLARDL+R+HGF P+ N RA+ PPD YIEFM
Sbjct: 1  MGNKATTVKEEREEIHLKIVPPLDKVFLRWLARDLQRVHGFKPKNNTRAITPPDSYIEFM 60

Query: 61 RLYGWLDVSLDDPDLA 73
          RL G LDV LDDPDLA
Sbjct: 61 RLNGSLDVDLDDPDLA 76

[Close]

BLAST of CsaV3_6G038520 vs. TAIR 10
Match: AT5G22210.2 (unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 106.7 bits (265), Expect = 1.2e-23
Identity = 49/76 (64.47%), Postives = 60/76 (78.95%), Query Frame = 0


Query: 1  MGNKPV---KQRDEIFVKVAPPLDQAFVRWLARDLERIHGFPPR-NPRAVKPPDHYIEFM 60
          MGNK     ++R+EI +K+ PPLD+ F+RWLARDL+R+HGF P+ N RA+ PPD YIEFM
Sbjct: 1  MGNKATTVKEEREEIHLKIVPPLDKVFLRWLARDLQRVHGFKPKNNTRAITPPDSYIEFM 60

Query: 61 RLYGWLDVSLDDPDLA 73
          RL G LDV LDDPDLA
Sbjct: 61 RLNGSLDVDLDDPDLA 76

The following BLAST results are available for this feature:

BLAST of CsaV3_6G038520 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647364.1	2.2e-59	100.00	hypothetical protein Csa_003696 [Cucumis sativus]	[more]
XP_031743912.1	5.7e-36	100.00	uncharacterized protein LOC101220037 [Cucumis sativus]	[more]
XP_022152955.1	1.6e-30	85.53	uncharacterized protein LOC111020571 [Momordica charantia] >XP_022152956.1 uncha...	[more]
KAG6570469.1	8.0e-30	65.38	hypothetical protein SDJN03_29384, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0061729.1	1.8e-29	83.56	uncharacterized protein E6C27_scaffold212G001040 [Cucumis melo var. makuwa]	[more]

BLAST of CsaV3_6G038520 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G038520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJX9	2.8e-36	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G425830 PE=4 SV=1	[more]
A0A6J1DJ99	7.8e-31	85.53	uncharacterized protein LOC111020571 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A5A7V7T4	8.7e-30	83.56	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A061GZN3	2.5e-29	82.43	Uncharacterized protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_041290 PE=4 ...	[more]
A0A6J0ZWT3	2.5e-29	82.43	uncharacterized protein LOC110412594 OS=Herrania umbratica OX=108875 GN=LOC11041...	[more]

BLAST of CsaV3_6G038520 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G22210.1	1.2e-23	64.47	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin...	[more]
AT5G22210.2	1.2e-23	64.47	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae ...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G038520.1	CsaV3_6G038520.1	mRNA