CsaV3_6G037630 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G037630
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr6: 21306542 .. 21307188 (-)
RNA-Seq Expression	CsaV3_6G037630
Synteny	CsaV3_6G037630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGAGTTGGCACATTGCAATTGGTCCAAAGAGGCGAAAAGAAAAGTCCCCACGAAAGTTTAAATCTCAACGTAATTTCACTTCGCTCCCAAAACCCAAAAATCGCGCCTTTCAAAAACAAAAAATCTCCCTCTTCTTCTCCGACCAAAATTTTCATTTTCATTTTCACCTTCGATTTCCAAATTCCTTCGAATCAAAAACCTCCAATCTTCAAAACCAAAATGTTTCCCTTTTCGATTCCCACCAGAATCTCTCCCATTTTTCATCCTCACTATAAACACCCATTTTCCCCTTTCCTCTCCCGACTCGGCTTCACTTCTCATTCTCACTCCCATTCCTTCTTCGCCGTCTTCCATGGAGTTCTCCGCCGTCCGTTTCCACTCCGATAAGGAAAACCTTCCCCCGTTTACCCATAAGTTATACCCTTCAATTCCAAAGAAACCCACCATCCGAAGGAGGTTAAATCGGAAGCCGCTTCTCGATATAACCAATTCATTTGAAAATACTATTCGACTCGGTTCGATTCAAGATGGATTCATCGCCTCGGTTGAGTCAGTTTGTTTGCAGCCAAATTCCAGGAAGAGGAAAGCTGGTGATGAAGTTTATTCTGGAACTGCCAAATCGCTCAGAATGGGATTCAGATAA

mRNA sequence

ATGCTGAGTTGGCACATTGCAATTGGTCCAAAGAGGCGAAAAGAAAAGTCCCCACGAAAGTTTAAATCTCAACAATCTCTCCCATTTTTCATCCTCACTATAAACACCCATTTTCCCCTTTCCTCTCCCGACTCGGCTTCACTTCTCATTCTCACTCCCATTCCTTCTTCGCCGTCTTCCATGGAGTTCTCCGCCGTCCGTTTCCACTCCGATAAGGAAAACCTTCCCCCGTTTACCCATAAGTTATACCCTTCAATTCCAAAGAAACCCACCATCCGAAGGAGGTTAAATCGGAAGCCGCTTCTCGATATAACCAATTCATTTGAAAATACTATTCGACTCGGTTCGATTCAAGATGGATTCATCGCCTCGGTTGAGTCAGTTTGTTTGCAGCCAAATTCCAGGAAGAGGAAAGCTGGTGATGAAGTTTATTCTGGAACTGCCAAATCGCTCAGAATGGGATTCAGATAA

Coding sequence (CDS)

ATGCTGAGTTGGCACATTGCAATTGGTCCAAAGAGGCGAAAAGAAAAGTCCCCACGAAAGTTTAAATCTCAACAATCTCTCCCATTTTTCATCCTCACTATAAACACCCATTTTCCCCTTTCCTCTCCCGACTCGGCTTCACTTCTCATTCTCACTCCCATTCCTTCTTCGCCGTCTTCCATGGAGTTCTCCGCCGTCCGTTTCCACTCCGATAAGGAAAACCTTCCCCCGTTTACCCATAAGTTATACCCTTCAATTCCAAAGAAACCCACCATCCGAAGGAGGTTAAATCGGAAGCCGCTTCTCGATATAACCAATTCATTTGAAAATACTATTCGACTCGGTTCGATTCAAGATGGATTCATCGCCTCGGTTGAGTCAGTTTGTTTGCAGCCAAATTCCAGGAAGAGGAAAGCTGGTGATGAAGTTTATTCTGGAACTGCCAAATCGCTCAGAATGGGATTCAGATAA

Protein sequence

MLSWHIAIGPKRRKEKSPRKFKSQQSLPFFILTINTHFPLSSPDSASLLILTPIPSSPSSMEFSAVRFHSDKENLPPFTHKLYPSIPKKPTIRRRLNRKPLLDITNSFENTIRLGSIQDGFIASVESVCLQPNSRKRKAGDEVYSGTAKSLRMGFR*

Homology

[Close]

BLAST of CsaV3_6G037630 vs. NCBI nr
Match: KGN47955.1 (hypothetical protein Csa_002785 [Cucumis sativus])

HSP 1 Score: 312.4 bits (799), Expect = 2.2e-81
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 1   MLSWHIAIGPKRRKEKSPRKFKSQQSLPFFILTINTHFPLSSPDSASLLILTPIPSSPSS 60
           MLSWHIAIGPKRRKEKSPRKFKSQQSLPFFILTINTHFPLSSPDSASLLILTPIPSSPSS
Sbjct: 1   MLSWHIAIGPKRRKEKSPRKFKSQQSLPFFILTINTHFPLSSPDSASLLILTPIPSSPSS 60

Query: 61  MEFSAVRFHSDKENLPPFTHKLYPSIPKKPTIRRRLNRKPLLDITNSFENTIRLGSIQDG 120
           MEFSAVRFHSDKENLPPFTHKLYPSIPKKPTIRRRLNRKPLLDITNSFENTIRLGSIQDG
Sbjct: 61  MEFSAVRFHSDKENLPPFTHKLYPSIPKKPTIRRRLNRKPLLDITNSFENTIRLGSIQDG 120

Query: 121 FIASVESVCLQPNSRKRKAGDEVYSGTAKSLRMGFR 157
           FIASVESVCLQPNSRKRKAGDEVYSGTAKSLRMGFR
Sbjct: 121 FIASVESVCLQPNSRKRKAGDEVYSGTAKSLRMGFR 156

[Close]

BLAST of CsaV3_6G037630 vs. NCBI nr
Match: KAG6589263.1 (hypothetical protein SDJN03_17828, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 124.8 bits (312), Expect = 6.6e-25
Identity = 65/96 (67.71%), Postives = 74/96 (77.08%), Query Frame = 0


Query: 61  MEFSAVRFHSDKENLPPFTHKLYPSIPKKPTIRRRLNRKPLLDITNSFENTIRLGSIQDG 120
           MEF+AVRF S KENLP  + K +P   KKP  RRRLNRKPL DITNSFE+++R   +QD 
Sbjct: 1   MEFAAVRFPSGKENLPLLSQKQFPPNQKKPITRRRLNRKPLADITNSFESSVRFSFVQD- 60

Query: 121 FIASVESVCLQPNSRKRKAGDEVYSGTAKSLRMGFR 157
              SVESVCLQ NS+KRKA DE+ SGTAKSLRMGFR
Sbjct: 61  HSGSVESVCLQLNSKKRKAADEICSGTAKSLRMGFR 95

[Close]

BLAST of CsaV3_6G037630 vs. NCBI nr
Match: GAV75989.1 (hypothetical protein CFOL_v3_19465, partial [Cephalotus follicularis])

HSP 1 Score: 68.9 bits (167), Expect = 4.3e-08
Identity = 49/109 (44.95%), Postives = 62/109 (56.88%), Query Frame = 0


Query: 59  SSMEFSAVRFHSDKENLPPFTHKL-------YPSIPKKPTIRRRLNRKPLLDITNSFENT 118
           S ME   +  + +KEN+PPF+ K         PS  K PT +RR  RKPL DITN F N+
Sbjct: 6   SPMEAITLSDNYNKENIPPFSPKQANPVPVNAPSFKKIPTCKRRF-RKPLADITNLFNNS 65

Query: 119 IRLGSIQDGFIASVE----SVCLQPNSRKRKAGDEVYSGTAKSLRMGFR 157
           +   S Q+     +     SVC  PN+RKRKA   V S ++KSLRMGFR
Sbjct: 66  VSSSSTQESISLLLSSPPVSVC-APNARKRKA---VGSSSSKSLRMGFR 109

[Close]

BLAST of CsaV3_6G037630 vs. NCBI nr
Match: CAB4273203.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 60.5 bits (145), Expect = 1.5e-05
Identity = 52/120 (43.33%), Postives = 61/120 (50.83%), Query Frame = 0


Query: 61  MEFSAVRFHSDKENLPPFT--HKLYPSIP------KKPTIRRRLNRKPLLDITN------ 120
           ME SA R+HS+KENLPP +    L   +P      KK   + RL RKPL DITN      
Sbjct: 1   MEASACRYHSNKENLPPSSAMANLTNPVPENGSSSKKCNKKTRLRRKPLADITNLYIYGN 60

Query: 121 --SFENTIRLGSIQDGFIASVESVC-LQPNSRKRKAGDE-------VYSGTAKSLRMGFR 157
             SF  +  L S    F +S  SV     NSRKRK+  E       V S  +KSLRMGFR
Sbjct: 61  QSSFGLSDHLPSATLPFSSSSSSVSGSASNSRKRKSTQEDNTNSSKVNSSNSKSLRMGFR 120

[Close]

BLAST of CsaV3_6G037630 vs. NCBI nr
Match: OAY33953.1 (hypothetical protein MANES_13G138400v8 [Manihot esculenta])

HSP 1 Score: 58.5 bits (140), Expect = 5.8e-05
Identity = 43/111 (38.74%), Postives = 62/111 (55.86%), Query Frame = 0


Query: 61  MEFSA--VRFHSDKENLPPFTHKLYPSIP-----KKPTIRRRLNRKPLLDITNSFENTIR 120
           MEF+A     HS+KEN+PPF+ K    IP      K   RRR+ R+PL DIT  + ++++
Sbjct: 1   MEFTAKLCDHHSNKENIPPFSAKPANPIPASVASSKKKFRRRI-REPLEDITYFYRSSVQ 60

Query: 121 LGSIQ-DGFIASVESVCLQPNSRKRKAGDE-------VYSGTAKSLRMGFR 157
           L   Q D  ++++       NS+KRKA D+       V   ++KSLR GFR
Sbjct: 61  LALAQEDDSLSAISVSGSASNSKKRKASDQENEDTGAVAGPSSKSLRFGFR 110

[Close]

BLAST of CsaV3_6G037630 vs. ExPASy TrEMBL
Match: A0A0A0KE31 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G419520 PE=4 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 1.1e-81
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 1   MLSWHIAIGPKRRKEKSPRKFKSQQSLPFFILTINTHFPLSSPDSASLLILTPIPSSPSS 60
           MLSWHIAIGPKRRKEKSPRKFKSQQSLPFFILTINTHFPLSSPDSASLLILTPIPSSPSS
Sbjct: 1   MLSWHIAIGPKRRKEKSPRKFKSQQSLPFFILTINTHFPLSSPDSASLLILTPIPSSPSS 60

Query: 61  MEFSAVRFHSDKENLPPFTHKLYPSIPKKPTIRRRLNRKPLLDITNSFENTIRLGSIQDG 120
           MEFSAVRFHSDKENLPPFTHKLYPSIPKKPTIRRRLNRKPLLDITNSFENTIRLGSIQDG
Sbjct: 61  MEFSAVRFHSDKENLPPFTHKLYPSIPKKPTIRRRLNRKPLLDITNSFENTIRLGSIQDG 120

Query: 121 FIASVESVCLQPNSRKRKAGDEVYSGTAKSLRMGFR 157
           FIASVESVCLQPNSRKRKAGDEVYSGTAKSLRMGFR
Sbjct: 121 FIASVESVCLQPNSRKRKAGDEVYSGTAKSLRMGFR 156

[Close]

BLAST of CsaV3_6G037630 vs. ExPASy TrEMBL
Match: A0A1Q3C6Z4 (Uncharacterized protein (Fragment) OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_19465 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.1e-08
Identity = 49/109 (44.95%), Postives = 62/109 (56.88%), Query Frame = 0


Query: 59  SSMEFSAVRFHSDKENLPPFTHKL-------YPSIPKKPTIRRRLNRKPLLDITNSFENT 118
           S ME   +  + +KEN+PPF+ K         PS  K PT +RR  RKPL DITN F N+
Sbjct: 6   SPMEAITLSDNYNKENIPPFSPKQANPVPVNAPSFKKIPTCKRRF-RKPLADITNLFNNS 65

Query: 119 IRLGSIQDGFIASVE----SVCLQPNSRKRKAGDEVYSGTAKSLRMGFR 157
           +   S Q+     +     SVC  PN+RKRKA   V S ++KSLRMGFR
Sbjct: 66  VSSSSTQESISLLLSSPPVSVC-APNARKRKA---VGSSSSKSLRMGFR 109

[Close]

BLAST of CsaV3_6G037630 vs. ExPASy TrEMBL
Match: A0A6J5UAF7 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS20443 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 7.4e-06
Identity = 52/120 (43.33%), Postives = 61/120 (50.83%), Query Frame = 0


Query: 61  MEFSAVRFHSDKENLPPFT--HKLYPSIP------KKPTIRRRLNRKPLLDITN------ 120
           ME SA R+HS+KENLPP +    L   +P      KK   + RL RKPL DITN      
Sbjct: 1   MEASACRYHSNKENLPPSSAMANLTNPVPENGSSSKKCNKKTRLRRKPLADITNLYIYGN 60

Query: 121 --SFENTIRLGSIQDGFIASVESVC-LQPNSRKRKAGDE-------VYSGTAKSLRMGFR 157
             SF  +  L S    F +S  SV     NSRKRK+  E       V S  +KSLRMGFR
Sbjct: 61  QSSFGLSDHLPSATLPFSSSSSSVSGSASNSRKRKSTQEDNTNSSKVNSSNSKSLRMGFR 120

[Close]

BLAST of CsaV3_6G037630 vs. ExPASy TrEMBL
Match: A0A2C9URL6 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_13G138400 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.8e-05
Identity = 43/111 (38.74%), Postives = 62/111 (55.86%), Query Frame = 0


Query: 61  MEFSA--VRFHSDKENLPPFTHKLYPSIP-----KKPTIRRRLNRKPLLDITNSFENTIR 120
           MEF+A     HS+KEN+PPF+ K    IP      K   RRR+ R+PL DIT  + ++++
Sbjct: 1   MEFTAKLCDHHSNKENIPPFSAKPANPIPASVASSKKKFRRRI-REPLEDITYFYRSSVQ 60

Query: 121 LGSIQ-DGFIASVESVCLQPNSRKRKAGDE-------VYSGTAKSLRMGFR 157
           L   Q D  ++++       NS+KRKA D+       V   ++KSLR GFR
Sbjct: 61  LALAQEDDSLSAISVSGSASNSKKRKASDQENEDTGAVAGPSSKSLRFGFR 110

[Close]

BLAST of CsaV3_6G037630 vs. ExPASy TrEMBL
Match: A0A7N2R9E8 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 6.3e-05
Identity = 41/100 (41.00%), Postives = 56/100 (56.00%), Query Frame = 0


Query: 70  SDKENLPPFTHKLYPSIP-----KKPTIRRRLNRKPLLDITNSFENTIRLGSIQDG---F 129
           ++KEN+PPF+ K    +P      K T +RRL RKPL DITN F ++ +  S+ +     
Sbjct: 10  NNKENIPPFSTKRANPVPANALSSKKTNKRRL-RKPLADITNLFYDSFQPSSVPESVYLL 69

Query: 130 IASVESVCLQPNSRKRKA-----GDEVYSGTAKSLRMGFR 157
           ++S  S     N RKRKA       EV +  +KSLRMGFR
Sbjct: 70  LSSSASSVSVSNPRKRKATLKTGSVEVATSNSKSLRMGFR 108

The following BLAST results are available for this feature:

BLAST of CsaV3_6G037630 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN47955.1	2.2e-81	100.00	hypothetical protein Csa_002785 [Cucumis sativus]	[more]
KAG6589263.1	6.6e-25	67.71	hypothetical protein SDJN03_17828, partial [Cucurbita argyrosperma subsp. sorori...	[more]
GAV75989.1	4.3e-08	44.95	hypothetical protein CFOL_v3_19465, partial [Cephalotus follicularis]	[more]
CAB4273203.1	1.5e-05	43.33	unnamed protein product [Prunus armeniaca]	[more]
OAY33953.1	5.8e-05	38.74	hypothetical protein MANES_13G138400v8 [Manihot esculenta]	[more]

BLAST of CsaV3_6G037630 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G037630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KE31	1.1e-81	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G419520 PE=4 SV=1	[more]
A0A1Q3C6Z4	2.1e-08	44.95	Uncharacterized protein (Fragment) OS=Cephalotus follicularis OX=3775 GN=CFOL_v3...	[more]
A0A6J5UAF7	7.4e-06	43.33	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS20443 PE=4 S...	[more]
A0A2C9URL6	2.8e-05	38.74	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_13G138400 PE=4 SV=...	[more]
A0A7N2R9E8	6.3e-05	41.00	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]

BLAST of CsaV3_6G037630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G037630.1	CsaV3_6G037630.1	mRNA