CsaV3_6G019160 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G019160
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr6: 13958889 .. 13959757 (-)
RNA-Seq Expression	CsaV3_6G019160
Synteny	CsaV3_6G019160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTGTTTCACTCTTAAAATTTATTACTTTTATCATATATGTGTCTATTAACTACACAATATACTTAATGTGTGTTTGATTGCATGTCTAGCTCACCTTCAACTTATACAACTAGTGGCTAACTCTAACACATCTATAACTCTAACAAGTGTCCAATACGCTTCAACACGTGTGGGTCATAGACACATCAGCCAAACCTAAAGTGAGTGTGATGAATTGTTTTGGGAGTTTATCTCTTAGTTGTCCTTTATTTTCTGTTCTGTTTAAATTTTAAGTTTCTGCAATTTTTAATATTTGAATATGTTAAAATCTTTTAGTTTAATGAGCACTATTGAAGTATTCTTCATTTTAGAGCCTCTCCAATCTTGGACTTGATGAGCAAGACCTTCGAACCTTAATGGCTGGAAAACTCGCGGTAAAGGGCGATAACACCAAACCCAATCCACAAGAGATTTCTCCAAAAACCATGACAACCCACTTGCCAGTGGAGGGATCTATGGTAGAAATCAAAGTCAGCATTGCCAATATGCAAGTGCTGTGGGAAACTTTGGCGAAGCAAATTGAGTTTGCGGGTGTGGGACAGCCACCAAAACTACTAGAGAATAGAAAAGATGAAAGAACAGGAAATCAAATTCAAGTAGATCAAAGAATGAGGAACCAAGTTCAAGAAATGGAGCCAAGAAGATCAGGAGAGGGCGTTCTCATTCCATAGATAAAAACCAAGTTGCAAGGTATTAACTGCGAATTCAAGAACTACAAAGAAGCGACAGATATTCAGATTCTTCATTCGAGGAGGAAAAAATGTTTAGACAAATACTCTCATGAGCAACAAAAAAGAAGAAGATAATACTGCATAGAACGAAAACCACC

mRNA sequence

ATGGCTGGAAAACTCGCGGTAAAGGGCGATAACACCAAACCCAATCCACAAGAGATTTCTCCAAAAACCATGACAACCCACTTGCCAGTGGAGGGATCTATGGTAGAAATCAAAGTCAGCATTGCCAATATGCAAGTGCTGTGGGAAACTTTGGCGAAGCAAATTGAGTTTGCGGGTGTGGGACAGCCACCAAAACTACTAGAGAATAGAAAAGATGAAAGAACAGGAAATCAAATTCAAGTAGATCAAAGAATGAGGAACCAAGTTCAAGAAATGGAGCCAAGAAGATCAGGAGAGGGCGTTCTCATTCCATAG

Coding sequence (CDS)

ATGGCTGGAAAACTCGCGGTAAAGGGCGATAACACCAAACCCAATCCACAAGAGATTTCTCCAAAAACCATGACAACCCACTTGCCAGTGGAGGGATCTATGGTAGAAATCAAAGTCAGCATTGCCAATATGCAAGTGCTGTGGGAAACTTTGGCGAAGCAAATTGAGTTTGCGGGTGTGGGACAGCCACCAAAACTACTAGAGAATAGAAAAGATGAAAGAACAGGAAATCAAATTCAAGTAGATCAAAGAATGAGGAACCAAGTTCAAGAAATGGAGCCAAGAAGATCAGGAGAGGGCGTTCTCATTCCATAG

Protein sequence

MAGKLAVKGDNTKPNPQEISPKTMTTHLPVEGSMVEIKVSIANMQVLWETLAKQIEFAGVGQPPKLLENRKDERTGNQIQVDQRMRNQVQEMEPRRSGEGVLIP*

Homology

[Close]

BLAST of CsaV3_6G019160 vs. NCBI nr
Match: KGN47210.1 (hypothetical protein Csa_016976 [Cucumis sativus])

HSP 1 Score: 206.5 bits (524), Expect = 1.2e-49
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MAGKLAVKGDNTKPNPQEISPKTMTTHLPVEGSMVEIKVSIANMQVLWETLAKQIEFAGV 60
           MAGKLAVKGDNTKPNPQEISPKTMTTHLPVEGSMVEIKVSIANMQVLWETLAKQIEFAGV
Sbjct: 1   MAGKLAVKGDNTKPNPQEISPKTMTTHLPVEGSMVEIKVSIANMQVLWETLAKQIEFAGV 60

Query: 61  GQPPKLLENRKDERTGNQIQVDQRMRNQVQEMEPRRSGEGVLIP 105
           GQPPKLLENRKDERTGNQIQVDQRMRNQVQEMEPRRSGEGVLIP
Sbjct: 61  GQPPKLLENRKDERTGNQIQVDQRMRNQVQEMEPRRSGEGVLIP 104

[Close]

BLAST of CsaV3_6G019160 vs. ExPASy TrEMBL
Match: A0A0A0KBX3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G205840 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 5.6e-50
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MAGKLAVKGDNTKPNPQEISPKTMTTHLPVEGSMVEIKVSIANMQVLWETLAKQIEFAGV 60
           MAGKLAVKGDNTKPNPQEISPKTMTTHLPVEGSMVEIKVSIANMQVLWETLAKQIEFAGV
Sbjct: 1   MAGKLAVKGDNTKPNPQEISPKTMTTHLPVEGSMVEIKVSIANMQVLWETLAKQIEFAGV 60

Query: 61  GQPPKLLENRKDERTGNQIQVDQRMRNQVQEMEPRRSGEGVLIP 105
           GQPPKLLENRKDERTGNQIQVDQRMRNQVQEMEPRRSGEGVLIP
Sbjct: 61  GQPPKLLENRKDERTGNQIQVDQRMRNQVQEMEPRRSGEGVLIP 104

The following BLAST results are available for this feature:

BLAST of CsaV3_6G019160 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN47210.1	1.2e-49	100.00	hypothetical protein Csa_016976 [Cucumis sativus]	[more]

BLAST of CsaV3_6G019160 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G019160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KBX3	5.6e-50	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G205840 PE=4 SV=1	[more]

BLAST of CsaV3_6G019160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..27

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G019160.1	CsaV3_6G019160.1	mRNA