CsaV3_6G017090 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G017090
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr6: 12725941 .. 12726168 (-)
RNA-Seq Expression	CsaV3_6G017090
Synteny	CsaV3_6G017090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGAAAAGTCGAGACTGGCAAGTTGGGGAAGAGGTGCGAAGGACAGTTACAGTAATTGAGAGAAGCAGCTGCCCGGGAGAGGGAGGTATCAGATTAGGCACGAAGAGAGGATTAGTCGAATCGACTGTAAGAAGAGGCGGAGGAGCACGACGTCCGTTGACTTCTACTCCGAGGACTCCTCACAAACTAGGCCGACCGACCCGCTCCTGTGACTTTCCCAGGTGA

mRNA sequence

ATGAGGAAAAGTCGAGACTGGCAAGTTGGGGAAGAGGTGCGAAGGACAGTTACAGTAATTGAGAGAAGCAGCTGCCCGGGAGAGGGAGGTATCAGATTAGGCACGAAGAGAGGATTAGTCGAATCGACTGTAAGAAGAGGCGGAGGAGCACGACGTCCGTTGACTTCTACTCCGAGGACTCCTCACAAACTAGGCCGACCGACCCGCTCCTGTGACTTTCCCAGGTGA

Coding sequence (CDS)

ATGAGGAAAAGTCGAGACTGGCAAGTTGGGGAAGAGGTGCGAAGGACAGTTACAGTAATTGAGAGAAGCAGCTGCCCGGGAGAGGGAGGTATCAGATTAGGCACGAAGAGAGGATTAGTCGAATCGACTGTAAGAAGAGGCGGAGGAGCACGACGTCCGTTGACTTCTACTCCGAGGACTCCTCACAAACTAGGCCGACCGACCCGCTCCTGTGACTTTCCCAGGTGA

Protein sequence

MRKSRDWQVGEEVRRTVTVIERSSCPGEGGIRLGTKRGLVESTVRRGGGARRPLTSTPRTPHKLGRPTRSCDFPR*

Homology

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BLAST of CsaV3_6G017090 vs. NCBI nr
Match: KAE8646975.1 (hypothetical protein Csa_020754 [Cucumis sativus])

HSP 1 Score: 154.8 bits (390), Expect = 2.9e-34
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 1  MRKSRDWQVGEEVRRTVTVIERSSCPGEGGIRLGTKRGLVESTVRRGGGARRPLTSTPRT 60
          MRKSRDWQVGEEVRRTVTVIERSSCPGEGGIRLGTKRGLVESTVRRGGGARRPLTSTPRT
Sbjct: 1  MRKSRDWQVGEEVRRTVTVIERSSCPGEGGIRLGTKRGLVESTVRRGGGARRPLTSTPRT 60

Query: 61 PHKLGRPTRSCDFPR 76
          PHKLGRPTRSCDFPR
Sbjct: 61 PHKLGRPTRSCDFPR 75

The following BLAST results are available for this feature:

BLAST of CsaV3_6G017090 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8646975.1	2.9e-34	100.00	hypothetical protein Csa_020754 [Cucumis sativus]	[more]

BLAST of CsaV3_6G017090 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G017090 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G017090 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G017090.1	CsaV3_6G017090.1	mRNA