CsaV3_6G016990 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G016990
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr6: 12685657 .. 12685995 (-)
RNA-Seq Expression	CsaV3_6G016990
Synteny	CsaV3_6G016990

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATGAACAACAAACTTGCAAACAGAAGAATCCCAGCAACAAAAGGAAAAGAGAACCTGTCCAAGATTTGTATGAACCAATTAATTCGAAGAAATATAGACAAAAAACGGAAAGAACTTACGATTACGTATGGAATTAGAGAAAGTAGGGAAACGAAAAGGGATTTCAATTTGAAGATGGGTATTCAGATTCTCAAAATTACAGCCTCCTTTTACACAGCGGAAAAACAAACAACCCTCATCTCCTTCCCCAAATCCAATCCAAAGCCCACCGGAGCCGAGAAGGAGAGAAGTGACAAAGAGTTTGAGGAGAACAACGATAACGGTGTCCGTTAA

mRNA sequence

ATGGAGATGAACAACAAACTTGCAAACAGAAGAATCCCAGCAACAAAAGGAAAAGAGAACCTGTCCAAGATTTGTATGAACCAATTAATTCGAAGAAATATAGACAAAAAACGGAAAGAACTTACGATTACGTATGGAATTAGAGAAAGTAGGGAAACGAAAAGGGATTTCAATTTGAAGATGGGTATTCAGATTCTCAAAATTACAGCCTCCTTTTACACAGCGGAAAAACAAACAACCCTCATCTCCTTCCCCAAATCCAATCCAAAGCCCACCGGAGCCGAGAAGGAGAGAAGTGACAAAGAGTTTGAGGAGAACAACGATAACGGTGTCCGTTAA

Coding sequence (CDS)

ATGGAGATGAACAACAAACTTGCAAACAGAAGAATCCCAGCAACAAAAGGAAAAGAGAACCTGTCCAAGATTTGTATGAACCAATTAATTCGAAGAAATATAGACAAAAAACGGAAAGAACTTACGATTACGTATGGAATTAGAGAAAGTAGGGAAACGAAAAGGGATTTCAATTTGAAGATGGGTATTCAGATTCTCAAAATTACAGCCTCCTTTTACACAGCGGAAAAACAAACAACCCTCATCTCCTTCCCCAAATCCAATCCAAAGCCCACCGGAGCCGAGAAGGAGAGAAGTGACAAAGAGTTTGAGGAGAACAACGATAACGGTGTCCGTTAA

Protein sequence

MEMNNKLANRRIPATKGKENLSKICMNQLIRRNIDKKRKELTITYGIRESRETKRDFNLKMGIQILKITASFYTAEKQTTLISFPKSNPKPTGAEKERSDKEFEENNDNGVR*

Homology

[Close]

BLAST of CsaV3_6G016990 vs. NCBI nr
Match: KGN47165.1 (hypothetical protein Csa_020766 [Cucumis sativus])

HSP 1 Score: 217.2 bits (552), Expect = 7.1e-53
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MEMNNKLANRRIPATKGKENLSKICMNQLIRRNIDKKRKELTITYGIRESRETKRDFNLK 60
           MEMNNKLANRRIPATKGKENLSKICMNQLIRRNIDKKRKELTITYGIRESRETKRDFNLK
Sbjct: 1   MEMNNKLANRRIPATKGKENLSKICMNQLIRRNIDKKRKELTITYGIRESRETKRDFNLK 60

Query: 61  MGIQILKITASFYTAEKQTTLISFPKSNPKPTGAEKERSDKEFEENNDNGVR 113
           MGIQILKITASFYTAEKQTTLISFPKSNPKPTGAEKERSDKEFEENNDNGVR
Sbjct: 61  MGIQILKITASFYTAEKQTTLISFPKSNPKPTGAEKERSDKEFEENNDNGVR 112

[Close]

BLAST of CsaV3_6G016990 vs. ExPASy TrEMBL
Match: A0A0A0KBT6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G191530 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 3.4e-53
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MEMNNKLANRRIPATKGKENLSKICMNQLIRRNIDKKRKELTITYGIRESRETKRDFNLK 60
           MEMNNKLANRRIPATKGKENLSKICMNQLIRRNIDKKRKELTITYGIRESRETKRDFNLK
Sbjct: 1   MEMNNKLANRRIPATKGKENLSKICMNQLIRRNIDKKRKELTITYGIRESRETKRDFNLK 60

Query: 61  MGIQILKITASFYTAEKQTTLISFPKSNPKPTGAEKERSDKEFEENNDNGVR 113
           MGIQILKITASFYTAEKQTTLISFPKSNPKPTGAEKERSDKEFEENNDNGVR
Sbjct: 61  MGIQILKITASFYTAEKQTTLISFPKSNPKPTGAEKERSDKEFEENNDNGVR 112

The following BLAST results are available for this feature:

BLAST of CsaV3_6G016990 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN47165.1	7.1e-53	100.00	hypothetical protein Csa_020766 [Cucumis sativus]	[more]

BLAST of CsaV3_6G016990 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G016990 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KBT6	3.4e-53	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G191530 PE=4 SV=1	[more]

BLAST of CsaV3_6G016990 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..112
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 91..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G016990.1	CsaV3_6G016990.1	mRNA