CsaV3_6G016990 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G016990
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6: 12685657 .. 12685995 (-)
RNA-Seq ExpressionCsaV3_6G016990
SyntenyCsaV3_6G016990
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGATGAACAACAAACTTGCAAACAGAAGAATCCCAGCAACAAAAGGAAAAGAGAACCTGTCCAAGATTTGTATGAACCAATTAATTCGAAGAAATATAGACAAAAAACGGAAAGAACTTACGATTACGTATGGAATTAGAGAAAGTAGGGAAACGAAAAGGGATTTCAATTTGAAGATGGGTATTCAGATTCTCAAAATTACAGCCTCCTTTTACACAGCGGAAAAACAAACAACCCTCATCTCCTTCCCCAAATCCAATCCAAAGCCCACCGGAGCCGAGAAGGAGAGAAGTGACAAAGAGTTTGAGGAGAACAACGATAACGGTGTCCGTTAA

mRNA sequence

ATGGAGATGAACAACAAACTTGCAAACAGAAGAATCCCAGCAACAAAAGGAAAAGAGAACCTGTCCAAGATTTGTATGAACCAATTAATTCGAAGAAATATAGACAAAAAACGGAAAGAACTTACGATTACGTATGGAATTAGAGAAAGTAGGGAAACGAAAAGGGATTTCAATTTGAAGATGGGTATTCAGATTCTCAAAATTACAGCCTCCTTTTACACAGCGGAAAAACAAACAACCCTCATCTCCTTCCCCAAATCCAATCCAAAGCCCACCGGAGCCGAGAAGGAGAGAAGTGACAAAGAGTTTGAGGAGAACAACGATAACGGTGTCCGTTAA

Coding sequence (CDS)

ATGGAGATGAACAACAAACTTGCAAACAGAAGAATCCCAGCAACAAAAGGAAAAGAGAACCTGTCCAAGATTTGTATGAACCAATTAATTCGAAGAAATATAGACAAAAAACGGAAAGAACTTACGATTACGTATGGAATTAGAGAAAGTAGGGAAACGAAAAGGGATTTCAATTTGAAGATGGGTATTCAGATTCTCAAAATTACAGCCTCCTTTTACACAGCGGAAAAACAAACAACCCTCATCTCCTTCCCCAAATCCAATCCAAAGCCCACCGGAGCCGAGAAGGAGAGAAGTGACAAAGAGTTTGAGGAGAACAACGATAACGGTGTCCGTTAA

Protein sequence

MEMNNKLANRRIPATKGKENLSKICMNQLIRRNIDKKRKELTITYGIRESRETKRDFNLKMGIQILKITASFYTAEKQTTLISFPKSNPKPTGAEKERSDKEFEENNDNGVR*
Homology
BLAST of CsaV3_6G016990 vs. NCBI nr
Match: KGN47165.1 (hypothetical protein Csa_020766 [Cucumis sativus])

HSP 1 Score: 217.2 bits (552), Expect = 7.1e-53
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0

Query: 1   MEMNNKLANRRIPATKGKENLSKICMNQLIRRNIDKKRKELTITYGIRESRETKRDFNLK 60
           MEMNNKLANRRIPATKGKENLSKICMNQLIRRNIDKKRKELTITYGIRESRETKRDFNLK
Sbjct: 1   MEMNNKLANRRIPATKGKENLSKICMNQLIRRNIDKKRKELTITYGIRESRETKRDFNLK 60

Query: 61  MGIQILKITASFYTAEKQTTLISFPKSNPKPTGAEKERSDKEFEENNDNGVR 113
           MGIQILKITASFYTAEKQTTLISFPKSNPKPTGAEKERSDKEFEENNDNGVR
Sbjct: 61  MGIQILKITASFYTAEKQTTLISFPKSNPKPTGAEKERSDKEFEENNDNGVR 112

BLAST of CsaV3_6G016990 vs. ExPASy TrEMBL
Match: A0A0A0KBT6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G191530 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 3.4e-53
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0

Query: 1   MEMNNKLANRRIPATKGKENLSKICMNQLIRRNIDKKRKELTITYGIRESRETKRDFNLK 60
           MEMNNKLANRRIPATKGKENLSKICMNQLIRRNIDKKRKELTITYGIRESRETKRDFNLK
Sbjct: 1   MEMNNKLANRRIPATKGKENLSKICMNQLIRRNIDKKRKELTITYGIRESRETKRDFNLK 60

Query: 61  MGIQILKITASFYTAEKQTTLISFPKSNPKPTGAEKERSDKEFEENNDNGVR 113
           MGIQILKITASFYTAEKQTTLISFPKSNPKPTGAEKERSDKEFEENNDNGVR
Sbjct: 61  MGIQILKITASFYTAEKQTTLISFPKSNPKPTGAEKERSDKEFEENNDNGVR 112

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN47165.17.1e-53100.00hypothetical protein Csa_020766 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KBT63.4e-53100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G191530 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 83..112
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 91..112

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G016990.1CsaV3_6G016990.1mRNA