CsaV3_6G015500 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G015500
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr6: 11454171 .. 11454840 (+)
RNA-Seq Expression	CsaV3_6G015500
Synteny	CsaV3_6G015500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGTGGTGCAACTCTACTTCTCCAATATGGTGCTCTCCAAGATGGTGGTGGTGCAGCTCTGCCCCTCTAAGATGATGGTGGTGCAGCTCCGCCTCTCCAAAATGATGGTGGTGCAGCTTTGTCTCTTTAAGATAATGGTAGTGAAACTTACGTCTCCAAAATGATGGTGGTGCAGCTTCGCCACTCCAAGATGATGGTGATGAAACTCACCTCTCCAAGATGGTGGTGGTGCAACTTTGCCTCTTCAATATGGGGGTCTTCAAGATAGTGGTGGTGCAACTCCACCTCTCTGAGATAACTCCCCTCTCCAAGATGTTGGTGGTGCAACCTTGCCTTTCCAAGATGATGACGATGGTGCATTGTCTTCGCCTCTCCAAAATGATGGTGGTGTAAATTCACCTTTCCAAGATGGTGGTGGTTTTGCCTCTCCAAAAGGATGATGGGATAGTCCACCTCTCCAAGATGTTAATAGTGCAGCTCCGCCTCTTCAAAATGATTCTAATGTAGCTTCCATTTCTCTAGGATGGTATTCTCCAAGATAGTGGTGGTGCAGCTTCGCCTCTCCAAAATGATAATGATGGTGTAGCTCCACCTCCACCTCTGCAAGCTGATAATGATGGTGCAACTCCGCCTCTCCAAAATGAAGATGTAGTTCAGCATCTTTAG

mRNA sequence

ATGGTGGTGGTGCAACTCTACTTCTCCAATATGGTGCTCTCCAAGATGGTGGTGGTGCAGCTCTGCCCCTCTAAGATGATGGTGGTGCAGCTCCGCCTCTCCAAAATGATGGTGGTGCAGCTTTCTTCGCCACTCCAAGATGATGGTGATGAAACTCACCTCTCCAAGATGGTGGTGGTGCAACTTTGCCTCTTCAATATGGGGGTCTTCAAGATAGTGGTGGTGCAACTCCACCTCTCTGAGATAACTCCCCTCTCCAAGATGTTGGTGGTGCAACCTTGCCTTTCCAAGATGATGACGATGGTGCATTGTCTTCGCCTCTCCAAAATGATGGATGGTATTCTCCAAGATAGTGGTGGTGCAGCTTCGCCTCTCCAAAATGATAATGATGGTGTAGCTCCACCTCCACCTCTGCAAGCTGATAATGATGGTGCAACTCCGCCTCTCCAAAATGAAGATGTAGTTCAGCATCTTTAG

Coding sequence (CDS)

ATGGTGGTGGTGCAACTCTACTTCTCCAATATGGTGCTCTCCAAGATGGTGGTGGTGCAGCTCTGCCCCTCTAAGATGATGGTGGTGCAGCTCCGCCTCTCCAAAATGATGGTGGTGCAGCTTTCTTCGCCACTCCAAGATGATGGTGATGAAACTCACCTCTCCAAGATGGTGGTGGTGCAACTTTGCCTCTTCAATATGGGGGTCTTCAAGATAGTGGTGGTGCAACTCCACCTCTCTGAGATAACTCCCCTCTCCAAGATGTTGGTGGTGCAACCTTGCCTTTCCAAGATGATGACGATGGTGCATTGTCTTCGCCTCTCCAAAATGATGGATGGTATTCTCCAAGATAGTGGTGGTGCAGCTTCGCCTCTCCAAAATGATAATGATGGTGTAGCTCCACCTCCACCTCTGCAAGCTGATAATGATGGTGCAACTCCGCCTCTCCAAAATGAAGATGTAGTTCAGCATCTTTAG

Protein sequence

MVVVQLYFSNMVLSKMVVVQLCPSKMMVVQLRLSKMMVVQLSSPLQDDGDETHLSKMVVVQLCLFNMGVFKIVVVQLHLSEITPLSKMLVVQPCLSKMMTMVHCLRLSKMMDGILQDSGGAASPLQNDNDGVAPPPPLQADNDGATPPLQNEDVVQHL*

Homology

[Close]

BLAST of CsaV3_6G015500 vs. NCBI nr
Match: KGN47004.1 (hypothetical protein Csa_020934 [Cucumis sativus])

HSP 1 Score: 296.6 bits (758), Expect = 1.3e-76
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0


Query: 1   MVVVQLYFSNMVLSKMVVVQLCPSKMMVVQLRLSKMMVVQLSSPLQDDGDETHLSKMVVV 60
           MVVVQLYFSNMVLSKMVVVQLCPSKMMVVQLRLSKMMVVQLSSPLQDDGDETHLSKMVVV
Sbjct: 1   MVVVQLYFSNMVLSKMVVVQLCPSKMMVVQLRLSKMMVVQLSSPLQDDGDETHLSKMVVV 60

Query: 61  QLCLFNMGVFKIVVVQLHLSEITPLSKMLVVQPCLSKMMTMVHCLRLSKMMDGILQDSGG 120
           QLCLFNMGVFKIVVVQLHLSEITPLSKMLVVQPCLSKMMTMVHCLRLSKMMDGILQDSGG
Sbjct: 61  QLCLFNMGVFKIVVVQLHLSEITPLSKMLVVQPCLSKMMTMVHCLRLSKMMDGILQDSGG 120

Query: 121 AASPLQNDNDGVAPPPPLQADNDGATPPLQNEDVVQHL 159
           AASPLQNDNDGVAPPPPLQADNDGATPPLQNEDVVQHL
Sbjct: 121 AASPLQNDNDGVAPPPPLQADNDGATPPLQNEDVVQHL 158

[Close]

BLAST of CsaV3_6G015500 vs. ExPASy TrEMBL
Match: A0A0A0KDX7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G167220 PE=4 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 6.2e-77
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0


Query: 1   MVVVQLYFSNMVLSKMVVVQLCPSKMMVVQLRLSKMMVVQLSSPLQDDGDETHLSKMVVV 60
           MVVVQLYFSNMVLSKMVVVQLCPSKMMVVQLRLSKMMVVQLSSPLQDDGDETHLSKMVVV
Sbjct: 1   MVVVQLYFSNMVLSKMVVVQLCPSKMMVVQLRLSKMMVVQLSSPLQDDGDETHLSKMVVV 60

Query: 61  QLCLFNMGVFKIVVVQLHLSEITPLSKMLVVQPCLSKMMTMVHCLRLSKMMDGILQDSGG 120
           QLCLFNMGVFKIVVVQLHLSEITPLSKMLVVQPCLSKMMTMVHCLRLSKMMDGILQDSGG
Sbjct: 61  QLCLFNMGVFKIVVVQLHLSEITPLSKMLVVQPCLSKMMTMVHCLRLSKMMDGILQDSGG 120

Query: 121 AASPLQNDNDGVAPPPPLQADNDGATPPLQNEDVVQHL 159
           AASPLQNDNDGVAPPPPLQADNDGATPPLQNEDVVQHL
Sbjct: 121 AASPLQNDNDGVAPPPPLQADNDGATPPLQNEDVVQHL 158

The following BLAST results are available for this feature:

BLAST of CsaV3_6G015500 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN47004.1	1.3e-76	100.00	hypothetical protein Csa_020934 [Cucumis sativus]	[more]

BLAST of CsaV3_6G015500 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G015500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDX7	6.2e-77	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G167220 PE=4 SV=1	[more]

BLAST of CsaV3_6G015500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 118..158

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G015500.1	CsaV3_6G015500.1	mRNA