CsaV3_6G014690 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G014690
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Histone deacetylase HDT1-like
Location	chr6: 10664496 .. 10665189 (-)
RNA-Seq Expression	CsaV3_6G014690
Synteny	CsaV3_6G014690

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTTTTGGGGTAAGTTTCTGTTTACATATTCCATCCATGCTTTTGTTTGTGTCATCATCAGTTTTTGTTTTTGTTTATCGAAAGCTTTAGCACGTTCTTGAATAGATTTGCTTGCTTCTTTTGGGAGTACATATACTAGGCTAGCTCGGATGCAGATGCATAAACTTTGATGGTTTTTGAGCGATGTCTTAATATTTAGTGTATGATTAATACTTGAGTGTATGTGAAAGTTCATAATCGGTTTTGGGATTTTAGGTGTTGAAGTTAAGCCTGGTCAGCCACTCTCTGTGCAGCCTGGTGACATGAACTATGTGCATCTATCACAGGTACTTTAGTTGTCTATAGCCGTTTTCCCATTTCAACCACCGATTCTTATTGTTTGGAATGATTAATAGACGCCGAGATTGTTTTATGCAGGCGACTCTAGGTGATTTGAAGAAGGACAAAGCAAATGAACCCGTGACTATTTTTTTGAAAATCGATGACCAGAAGCTTGTTCTGGGAGTTCTCTCTGCCGACAAGTTCCCTCAGATATCATTTGATCTCGTGTTTGAGAAGGAATTTGAGCTCTCTCACAATGGAAAGGGTGGAAGTATTTACTGTTTGGGATACCGGGCTCCCATGGAGGACCAAGGACAATATCCTTTTCAATTTGAGGATTTGTGTTTCTCATGTCTTGTATGGTTTTAG

mRNA sequence

ATGGAGTTTTGGGGTGTTGAAGTTAAGCCTGGTCAGCCACTCTCTGTGCAGCCTGGTGACATGAACTATGTGCATCTATCACAGGCGACTCTAGGTGATTTGAAGAAGGACAAAGCAAATGAACCCGTGACTATTTTTTTGAAAATCGATGACCAGAAGCTTGTTCTGGGAGTTCTCTCTGCCGACAAGTTCCCTCAGATATCATTTGATCTCGTGTTTGAGAAGGAATTTGAGCTCTCTCACAATGGAAAGGGTGGAAGTATTTACTGTTTGGGATACCGGGCTCCCATGGAGGACCAAGGACAATATCCTTTTCAATTTGAGGATTTGTGTTTCTCATGTCTTGTATGGTTTTAG

Coding sequence (CDS)

ATGGAGTTTTGGGGTGTTGAAGTTAAGCCTGGTCAGCCACTCTCTGTGCAGCCTGGTGACATGAACTATGTGCATCTATCACAGGCGACTCTAGGTGATTTGAAGAAGGACAAAGCAAATGAACCCGTGACTATTTTTTTGAAAATCGATGACCAGAAGCTTGTTCTGGGAGTTCTCTCTGCCGACAAGTTCCCTCAGATATCATTTGATCTCGTGTTTGAGAAGGAATTTGAGCTCTCTCACAATGGAAAGGGTGGAAGTATTTACTGTTTGGGATACCGGGCTCCCATGGAGGACCAAGGACAATATCCTTTTCAATTTGAGGATTTGTGTTTCTCATGTCTTGTATGGTTTTAG

Protein sequence

MEFWGVEVKPGQPLSVQPGDMNYVHLSQATLGDLKKDKANEPVTIFLKIDDQKLVLGVLSADKFPQISFDLVFEKEFELSHNGKGGSIYCLGYRAPMEDQGQYPFQFEDLCFSCLVWF*

Homology

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BLAST of CsaV3_6G014690 vs. NCBI nr
Match: KAE8646906.1 (hypothetical protein Csa_021002 [Cucumis sativus])

HSP 1 Score: 254.6 bits (649), Expect = 4.2e-64
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 1   MEFWGVEVKPGQPLSVQPGDMNYVHLSQATLGDLKKDKANEPVTIFLKIDDQKLVLGVLS 60
           MEFWGVEVKPGQPLSVQPGDMNYVHLSQATLGDLKKDKANEPVTIFLKIDDQKLVLGVLS
Sbjct: 1   MEFWGVEVKPGQPLSVQPGDMNYVHLSQATLGDLKKDKANEPVTIFLKIDDQKLVLGVLS 60

Query: 61  ADKFPQISFDLVFEKEFELSHNGKGGSIYCLGYRAPMEDQGQYPFQFEDLCFSCLVWF 119
           ADKFPQISFDLVFEKEFELSHNGKGGSIYCLGYRAPMEDQGQYPFQFEDLCFSCLVWF
Sbjct: 61  ADKFPQISFDLVFEKEFELSHNGKGGSIYCLGYRAPMEDQGQYPFQFEDLCFSCLVWF 118

[Close]

BLAST of CsaV3_6G014690 vs. NCBI nr
Match: KAA0033373.1 (histone deacetylase HDT1-like [Cucumis melo var. makuwa])

HSP 1 Score: 227.3 bits (578), Expect = 7.2e-56
Identity = 106/110 (96.36%), Postives = 109/110 (99.09%), Query Frame = 0


Query: 1   MEFWGVEVKPGQPLSVQPGDMNYVHLSQATLGDLKKDKANEPVTIFLKIDDQKLVLGVLS 60
           MEFWGVEVKPGQ LSVQPGDMNYVHLSQATLGDLKKDKAN+PVTIFLKIDDQKLVLGVLS
Sbjct: 1   MEFWGVEVKPGQALSVQPGDMNYVHLSQATLGDLKKDKANDPVTIFLKIDDQKLVLGVLS 60

Query: 61  ADKFPQISFDLVFEKEFELSHNGKGGSIYCLGYRAPMEDQGQYPFQFEDL 111
           ADKFPQISFDLVFEKEFELSHNGKGGSIYCLGYRAPMEDQGQYPFQFE++
Sbjct: 61  ADKFPQISFDLVFEKEFELSHNGKGGSIYCLGYRAPMEDQGQYPFQFENM 110

[Close]

BLAST of CsaV3_6G014690 vs. NCBI nr
Match: XP_004145781.1 (histone deacetylase HDT1 [Cucumis sativus])

HSP 1 Score: 218.4 bits (555), Expect = 3.3e-53
Identity = 104/109 (95.41%), Postives = 104/109 (95.41%), Query Frame = 0


Query: 1   MEFWGVEVKPGQPLSVQPGDMNYVHLSQATLGDLKKDKANEPVTIFLKIDDQKLVLGVLS 60
           MEFWGVEVKPGQPLSVQPGDMNYVHLSQATLGDLKKDKANEPVTIFLKIDDQKLVLGVLS
Sbjct: 1   MEFWGVEVKPGQPLSVQPGDMNYVHLSQATLGDLKKDKANEPVTIFLKIDDQKLVLGVLS 60

Query: 61  ADKFPQISFDLVFEKEFELSHNGKGGSIYCLGYRAPMEDQGQYPFQFED 110
           ADKFPQISFDLVFEKEFELSHNGKGGSIYCLGYRAPMEDQGQ  F   D
Sbjct: 61  ADKFPQISFDLVFEKEFELSHNGKGGSIYCLGYRAPMEDQGQEEFSDSD 109

[Close]

BLAST of CsaV3_6G014690 vs. NCBI nr
Match: XP_008458624.1 (PREDICTED: histone deacetylase HDT1-like [Cucumis melo])

HSP 1 Score: 213.0 bits (541), Expect = 1.4e-51
Identity = 101/109 (92.66%), Postives = 103/109 (94.50%), Query Frame = 0


Query: 1   MEFWGVEVKPGQPLSVQPGDMNYVHLSQATLGDLKKDKANEPVTIFLKIDDQKLVLGVLS 60
           MEFWGVEVKPGQ LSVQPGDMNYVHLSQATLGDLKKDKAN+PVTIFLKIDDQKLVLGVLS
Sbjct: 1   MEFWGVEVKPGQALSVQPGDMNYVHLSQATLGDLKKDKANDPVTIFLKIDDQKLVLGVLS 60

Query: 61  ADKFPQISFDLVFEKEFELSHNGKGGSIYCLGYRAPMEDQGQYPFQFED 110
           ADKFPQISFDLVFEKEFELSHNGKGGSIYCLGYRAPMEDQGQ  +   D
Sbjct: 61  ADKFPQISFDLVFEKEFELSHNGKGGSIYCLGYRAPMEDQGQEEYSDSD 109

[Close]

BLAST of CsaV3_6G014690 vs. NCBI nr
Match: XP_038900401.1 (histone deacetylase HDT1-like [Benincasa hispida])

HSP 1 Score: 187.2 bits (474), Expect = 8.3e-44
Identity = 87/109 (79.82%), Postives = 97/109 (88.99%), Query Frame = 0


Query: 1   MEFWGVEVKPGQPLSVQPGDMNYVHLSQATLGDLKKDKANEPVTIFLKIDDQKLVLGVLS 60
           MEFWGVEVKPGQ LSV+PGD   VHLSQATLG+LKKDKANEPVT+FLKI+DQKLVLG+LS
Sbjct: 1   MEFWGVEVKPGQALSVKPGDQMCVHLSQATLGELKKDKANEPVTVFLKINDQKLVLGILS 60

Query: 61  ADKFPQISFDLVFEKEFELSHNGKGGSIYCLGYRAPMEDQGQYPFQFED 110
           A+KFPQI+FDLVFEK+FEL HNGK GSIYCLGYRAPM+DQ Q  +   D
Sbjct: 61  AEKFPQIAFDLVFEKDFELFHNGKSGSIYCLGYRAPMDDQEQEDYSDSD 109

[Close]

BLAST of CsaV3_6G014690 vs. ExPASy Swiss-Prot
Match: Q6V9I6 (Histone deacetylase HDT1 OS=Solanum chacoense OX=4108 GN=HDT1 PE=2 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 6.0e-29
Identity = 65/116 (56.03%), Postives = 84/116 (72.41%), Query Frame = 0


Query: 1   MEFWGVEVKPGQPLSVQPGDMNYVHLSQATLGDLKKDKANEPVTIFLKIDDQKLVLGVLS 60
           MEFWG EVK G+PL+VQPGD   +HLSQA+LG+LKKDK +E V + + ID +KLVLG L+
Sbjct: 1   MEFWGAEVKSGEPLTVQPGDGMVLHLSQASLGELKKDK-SESVCLSVNIDGKKLVLGTLN 60

Query: 61  ADKFPQISFDLVFEKEFELSHNGKGGSIYCLGYRA--PME----DQGQYPFQFEDL 111
           ++K PQ  FDLVF+++FELSHN K GS+Y  GY+A  P E    D+  Y    ED+
Sbjct: 61  SEKVPQQQFDLVFDRDFELSHNLKSGSVYFFGYKATNPFEEEEDDEDDYDESDEDI 115

[Close]

BLAST of CsaV3_6G014690 vs. ExPASy Swiss-Prot
Match: Q8LJS2 (Histone deacetylase HDT1 OS=Glycine max OX=3847 GN=HDT1 PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.0e-24
Identity = 51/96 (53.12%), Postives = 68/96 (70.83%), Query Frame = 0


Query: 1  MEFWGVEVKPGQPLSVQPGDM--NYVHLSQATLGDLKKDKANEPVTIFLKIDDQKLVLGV 60
          MEFWGVEVK GQ ++V P D   +Y+H+SQ  LG+ KKDK NEPV ++LK+ +QK+VLG 
Sbjct: 1  MEFWGVEVKVGQTVTVDPMDPVDSYIHISQVALGEAKKDKPNEPVVLYLKVGEQKIVLGT 60

Query: 61 LSADKFPQISFDLVFEKEFELSHNGKGGSIYCLGYR 95
          LS D  P +S DLV + + ELSH  K  S++  GY+
Sbjct: 61 LSRDGIPHLSLDLVLDSDSELSHTSKSASVFFCGYK 96

[Close]

BLAST of CsaV3_6G014690 vs. ExPASy Swiss-Prot
Match: Q9M4U5 (Histone deacetylase HDT2 OS=Zea mays OX=4577 GN=HDT2 PE=1 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.3e-23
Identity = 50/101 (49.50%), Postives = 69/101 (68.32%), Query Frame = 0


Query: 1   MEFWGVEVKPGQPLSVQPGDMNYVHLSQATLGDLKKDKANEPVTIFLKIDDQKLVLGVLS 60
           MEFWG+EVKPG  +  +PG    +H+SQA LG+ KK   ++   +++K+DD+KL +G LS
Sbjct: 1   MEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESKK---SDSALMYVKVDDKKLAIGTLS 60

Query: 61  ADKFPQISFDLVFEKEFELSHNGKGGSIYCLGYRAPMEDQG 102
            DK+PQI FDLVF KEFELSH  K  S++  GY+     +G
Sbjct: 61  IDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYKVEQPIEG 98

[Close]

BLAST of CsaV3_6G014690 vs. ExPASy Swiss-Prot
Match: O24591 (Histone deacetylase HDT1 OS=Zea mays OX=4577 GN=HDT1 PE=1 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 4.9e-23
Identity = 52/110 (47.27%), Postives = 73/110 (66.36%), Query Frame = 0


Query: 1   MEFWGVEVKPGQPLSVQPGDMNYVHLSQATLGDLKKDKANEPVTIFLKIDDQKLVLGVLS 60
           MEFWG+EVKPG  +  +PG    +HLSQA LG+ KK   ++   +++KIDDQKL +G LS
Sbjct: 1   MEFWGLEVKPGSTVKCEPGYGFVLHLSQAALGESKK---SDNALMYVKIDDQKLAIGTLS 60

Query: 61  ADKFPQISFDLVFEKEFELSHNGKGGSIYCLGYRAPMEDQGQYPFQFEDL 111
            DK P I FDL+F+KEFELSH  K  S++  GY+       + PF+ +++
Sbjct: 61  VDKNPHIQFDLIFDKEFELSHTSKTTSVFFTGYKV------EQPFEEDEM 101

[Close]

BLAST of CsaV3_6G014690 vs. ExPASy Swiss-Prot
Match: Q9M4U4 (Histone deacetylase HDT3 OS=Zea mays OX=4577 GN=HDT3 PE=2 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 4.9e-23
Identity = 52/110 (47.27%), Postives = 73/110 (66.36%), Query Frame = 0


Query: 1   MEFWGVEVKPGQPLSVQPGDMNYVHLSQATLGDLKKDKANEPVTIFLKIDDQKLVLGVLS 60
           MEFWG+EVKPG  +  +PG    +HLSQA LG+ KK   ++   +++KIDDQKL +G LS
Sbjct: 1   MEFWGLEVKPGSTVKCEPGYGFVLHLSQAALGESKK---SDNALMYVKIDDQKLAIGTLS 60

Query: 61  ADKFPQISFDLVFEKEFELSHNGKGGSIYCLGYRAPMEDQGQYPFQFEDL 111
            DK P I FDL+F+KEFELSH  K  S++  GY+       + PF+ +++
Sbjct: 61  VDKNPHIQFDLIFDKEFELSHTSKTTSVFFTGYKV------EQPFEEDEM 101

[Close]

BLAST of CsaV3_6G014690 vs. ExPASy TrEMBL
Match: A0A5A7SSE8 (Histone deacetylase HDT1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold111G00220 PE=3 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 3.5e-56
Identity = 106/110 (96.36%), Postives = 109/110 (99.09%), Query Frame = 0


Query: 1   MEFWGVEVKPGQPLSVQPGDMNYVHLSQATLGDLKKDKANEPVTIFLKIDDQKLVLGVLS 60
           MEFWGVEVKPGQ LSVQPGDMNYVHLSQATLGDLKKDKAN+PVTIFLKIDDQKLVLGVLS
Sbjct: 1   MEFWGVEVKPGQALSVQPGDMNYVHLSQATLGDLKKDKANDPVTIFLKIDDQKLVLGVLS 60

Query: 61  ADKFPQISFDLVFEKEFELSHNGKGGSIYCLGYRAPMEDQGQYPFQFEDL 111
           ADKFPQISFDLVFEKEFELSHNGKGGSIYCLGYRAPMEDQGQYPFQFE++
Sbjct: 61  ADKFPQISFDLVFEKEFELSHNGKGGSIYCLGYRAPMEDQGQYPFQFENM 110

[Close]

BLAST of CsaV3_6G014690 vs. ExPASy TrEMBL
Match: A0A0A0KGM8 (Histone deacetylase 2a OS=Cucumis sativus OX=3659 GN=Csa_6G150550 PE=3 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.6e-53
Identity = 104/109 (95.41%), Postives = 104/109 (95.41%), Query Frame = 0


Query: 1   MEFWGVEVKPGQPLSVQPGDMNYVHLSQATLGDLKKDKANEPVTIFLKIDDQKLVLGVLS 60
           MEFWGVEVKPGQPLSVQPGDMNYVHLSQATLGDLKKDKANEPVTIFLKIDDQKLVLGVLS
Sbjct: 1   MEFWGVEVKPGQPLSVQPGDMNYVHLSQATLGDLKKDKANEPVTIFLKIDDQKLVLGVLS 60

Query: 61  ADKFPQISFDLVFEKEFELSHNGKGGSIYCLGYRAPMEDQGQYPFQFED 110
           ADKFPQISFDLVFEKEFELSHNGKGGSIYCLGYRAPMEDQGQ  F   D
Sbjct: 61  ADKFPQISFDLVFEKEFELSHNGKGGSIYCLGYRAPMEDQGQEEFSDSD 109

[Close]

BLAST of CsaV3_6G014690 vs. ExPASy TrEMBL
Match: A0A1S3C9I3 (histone deacetylase HDT1-like OS=Cucumis melo OX=3656 GN=LOC103497974 PE=3 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 6.8e-52
Identity = 101/109 (92.66%), Postives = 103/109 (94.50%), Query Frame = 0


Query: 1   MEFWGVEVKPGQPLSVQPGDMNYVHLSQATLGDLKKDKANEPVTIFLKIDDQKLVLGVLS 60
           MEFWGVEVKPGQ LSVQPGDMNYVHLSQATLGDLKKDKAN+PVTIFLKIDDQKLVLGVLS
Sbjct: 1   MEFWGVEVKPGQALSVQPGDMNYVHLSQATLGDLKKDKANDPVTIFLKIDDQKLVLGVLS 60

Query: 61  ADKFPQISFDLVFEKEFELSHNGKGGSIYCLGYRAPMEDQGQYPFQFED 110
           ADKFPQISFDLVFEKEFELSHNGKGGSIYCLGYRAPMEDQGQ  +   D
Sbjct: 61  ADKFPQISFDLVFEKEFELSHNGKGGSIYCLGYRAPMEDQGQEEYSDSD 109

[Close]

BLAST of CsaV3_6G014690 vs. ExPASy TrEMBL
Match: A0A6J1FXQ5 (histone deacetylase HDT1-like OS=Cucurbita moschata OX=3662 GN=LOC111448147 PE=3 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 5.8e-43
Identity = 86/109 (78.90%), Postives = 94/109 (86.24%), Query Frame = 0


Query: 1   MEFWGVEVKPGQPLSVQPGDMNYVHLSQATLGDLKKDKANEPVTIFLKIDDQKLVLGVLS 60
           MEFWGVEVKPGQ LSVQPGD  Y+HLSQATLG+LKKDKANE VTIF+KI DQKLVLG+LS
Sbjct: 1   MEFWGVEVKPGQALSVQPGDQKYLHLSQATLGELKKDKANESVTIFVKIGDQKLVLGILS 60

Query: 61  ADKFPQISFDLVFEKEFELSHNGKGGSIYCLGYRAPMEDQGQYPFQFED 110
           A+KFPQ+SFDLVFEKEFELSHNGK GSIYCLGY+A  EDQ    +   D
Sbjct: 61  AEKFPQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQEHEEYSDSD 109

[Close]

BLAST of CsaV3_6G014690 vs. ExPASy TrEMBL
Match: A0A6J1CG52 (histone deacetylase HDT1-like OS=Momordica charantia OX=3673 GN=LOC111011215 PE=3 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 3.7e-42
Identity = 84/100 (84.00%), Postives = 92/100 (92.00%), Query Frame = 0


Query: 1   MEFWGVEVKPGQPLSVQPGDMNYVHLSQATLGDLKKDKANEPVTIFLKIDDQKLVLGVLS 60
           MEFWGVEVKPGQ L+V+PGD  Y+HLSQATLG++KKDKANE VTIFLKI DQKLVLGVLS
Sbjct: 1   MEFWGVEVKPGQALAVKPGDQKYLHLSQATLGEIKKDKANESVTIFLKIGDQKLVLGVLS 60

Query: 61  ADKFPQISFDLVFEKEFELSHNGKGGSIYCLGYRAPMEDQ 101
           A+KFPQ+SFDLVFEKEFELSHNGK GSIYCLGY+A  EDQ
Sbjct: 61  AEKFPQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQ 100

[Close]

BLAST of CsaV3_6G014690 vs. TAIR 10
Match: AT3G44750.1 (histone deacetylase 3 )

HSP 1 Score: 107.8 bits (268), Expect = 5.9e-24
Identity = 52/102 (50.98%), Postives = 73/102 (71.57%), Query Frame = 0


Query: 1   MEFWGVEVKPGQPLSVQPGDMNYVHLSQATLGDLKKDKANEPVTIFLKIDDQKLVLGVLS 60
           MEFWG+EVK G+P++V P +   +H+SQA+LG+  K+K  E V + +K+ +Q LVLG LS
Sbjct: 1   MEFWGIEVKSGKPVTVTPEEGILIHVSQASLGEC-KNKKGEFVPLHVKVGNQNLVLGTLS 60

Query: 61  ADKFPQISFDLVFEKEFELSHNGKGGSIYCLGYRAP-MEDQG 102
            +  PQ+  DLVF+KEFELSH    GS+Y +GY+ P +E QG
Sbjct: 61  TENIPQLFCDLVFDKEFELSHTWGKGSVYFVGYKTPNIEPQG 101

[Close]

BLAST of CsaV3_6G014690 vs. TAIR 10
Match: AT3G44750.2 (histone deacetylase 3 )

HSP 1 Score: 107.8 bits (268), Expect = 5.9e-24
Identity = 52/102 (50.98%), Postives = 73/102 (71.57%), Query Frame = 0


Query: 1   MEFWGVEVKPGQPLSVQPGDMNYVHLSQATLGDLKKDKANEPVTIFLKIDDQKLVLGVLS 60
           MEFWG+EVK G+P++V P +   +H+SQA+LG+  K+K  E V + +K+ +Q LVLG LS
Sbjct: 1   MEFWGIEVKSGKPVTVTPEEGILIHVSQASLGEC-KNKKGEFVPLHVKVGNQNLVLGTLS 60

Query: 61  ADKFPQISFDLVFEKEFELSHNGKGGSIYCLGYRAP-MEDQG 102
            +  PQ+  DLVF+KEFELSH    GS+Y +GY+ P +E QG
Sbjct: 61  TENIPQLFCDLVFDKEFELSHTWGKGSVYFVGYKTPNIEPQG 101

[Close]

BLAST of CsaV3_6G014690 vs. TAIR 10
Match: AT5G03740.1 (histone deacetylase 2C )

HSP 1 Score: 102.8 bits (255), Expect = 1.9e-22
Identity = 45/99 (45.45%), Postives = 65/99 (65.66%), Query Frame = 0


Query: 1   MEFWGVEVKPGQPLSVQPGDMNYVHLSQATLGDLKKDKANEPVTIFLKIDDQKLVLGVLS 60
           MEFWGVEVK G+PL + PG    VH+SQ  LG+  K+   EP+ +++ +   KL++G LS
Sbjct: 1   MEFWGVEVKNGKPLHLDPGLDRLVHISQVALGE-SKNNVTEPIQLYVTVGSDKLLIGTLS 60

Query: 61  ADKFPQISFDLVFEKEFELSHNGKGGSIYCLGYRAPMED 100
            +KFPQ+S ++V E+ F LSH  K GS++  GY+    D
Sbjct: 61  HEKFPQLSTEIVLERNFALSHTWKNGSVFFSGYKVDASD 98

[Close]

BLAST of CsaV3_6G014690 vs. TAIR 10
Match: AT5G22650.1 (histone deacetylase 2B )

HSP 1 Score: 101.7 bits (252), Expect = 4.2e-22
Identity = 49/103 (47.57%), Postives = 68/103 (66.02%), Query Frame = 0


Query: 1   MEFWGVEVKPGQPLSVQPGDMNYVHLSQATLGDLKKDKANEPVTIFLKIDDQKLVLGVLS 60
           MEFWGV V P     V P + + VH+SQA+L      K+ E V + + +   KLV+G LS
Sbjct: 1   MEFWGVAVTPKNATKVTPEEDSLVHISQASLDCTV--KSGESVVLSVTVGGAKLVIGTLS 60

Query: 61  ADKFPQISFDLVFEKEFELSHNGKGGSIYCLGYRAPMEDQGQY 104
            DKFPQISFDLVF+KEFELSH+G   +++ +GY++P  +Q  +
Sbjct: 61  QDKFPQISFDLVFDKEFELSHSGTKANVHFIGYKSPNIEQDDF 101

[Close]

BLAST of CsaV3_6G014690 vs. TAIR 10
Match: AT5G22650.2 (histone deacetylase 2B )

HSP 1 Score: 101.7 bits (252), Expect = 4.2e-22
Identity = 49/103 (47.57%), Postives = 68/103 (66.02%), Query Frame = 0


Query: 1   MEFWGVEVKPGQPLSVQPGDMNYVHLSQATLGDLKKDKANEPVTIFLKIDDQKLVLGVLS 60
           MEFWGV V P     V P + + VH+SQA+L      K+ E V + + +   KLV+G LS
Sbjct: 1   MEFWGVAVTPKNATKVTPEEDSLVHISQASLDCTV--KSGESVVLSVTVGGAKLVIGTLS 60

Query: 61  ADKFPQISFDLVFEKEFELSHNGKGGSIYCLGYRAPMEDQGQY 104
            DKFPQISFDLVF+KEFELSH+G   +++ +GY++P  +Q  +
Sbjct: 61  QDKFPQISFDLVFDKEFELSHSGTKANVHFIGYKSPNIEQDDF 101

The following BLAST results are available for this feature:

BLAST of CsaV3_6G014690 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8646906.1	4.2e-64	100.00	hypothetical protein Csa_021002 [Cucumis sativus]	[more]
KAA0033373.1	7.2e-56	96.36	histone deacetylase HDT1-like [Cucumis melo var. makuwa]	[more]
XP_004145781.1	3.3e-53	95.41	histone deacetylase HDT1 [Cucumis sativus]	[more]
XP_008458624.1	1.4e-51	92.66	PREDICTED: histone deacetylase HDT1-like [Cucumis melo]	[more]
XP_038900401.1	8.3e-44	79.82	histone deacetylase HDT1-like [Benincasa hispida]	[more]

BLAST of CsaV3_6G014690 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6V9I6	6.0e-29	56.03	Histone deacetylase HDT1 OS=Solanum chacoense OX=4108 GN=HDT1 PE=2 SV=1	[more]
Q8LJS2	2.0e-24	53.13	Histone deacetylase HDT1 OS=Glycine max OX=3847 GN=HDT1 PE=2 SV=1	[more]
Q9M4U5	1.3e-23	49.50	Histone deacetylase HDT2 OS=Zea mays OX=4577 GN=HDT2 PE=1 SV=1	[more]
O24591	4.9e-23	47.27	Histone deacetylase HDT1 OS=Zea mays OX=4577 GN=HDT1 PE=1 SV=1	[more]
Q9M4U4	4.9e-23	47.27	Histone deacetylase HDT3 OS=Zea mays OX=4577 GN=HDT3 PE=2 SV=1	[more]

BLAST of CsaV3_6G014690 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SSE8	3.5e-56	96.36	Histone deacetylase HDT1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A0A0KGM8	1.6e-53	95.41	Histone deacetylase 2a OS=Cucumis sativus OX=3659 GN=Csa_6G150550 PE=3 SV=1	[more]
A0A1S3C9I3	6.8e-52	92.66	histone deacetylase HDT1-like OS=Cucumis melo OX=3656 GN=LOC103497974 PE=3 SV=1	[more]
A0A6J1FXQ5	5.8e-43	78.90	histone deacetylase HDT1-like OS=Cucurbita moschata OX=3662 GN=LOC111448147 PE=3...	[more]
A0A6J1CG52	3.7e-42	84.00	histone deacetylase HDT1-like OS=Momordica charantia OX=3673 GN=LOC111011215 PE=...	[more]

BLAST of CsaV3_6G014690 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G44750.1	5.9e-24	50.98	histone deacetylase 3	[more]
AT3G44750.2	5.9e-24	50.98	histone deacetylase 3	[more]
AT5G03740.1	1.9e-22	45.45	histone deacetylase 2C	[more]
AT5G22650.1	4.2e-22	47.57	histone deacetylase 2B	[more]
AT5G22650.2	4.2e-22	47.57	histone deacetylase 2B	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR041232	Nucleoplasmin-like domain	PFAM	PF17800	NPL	coord: 3..93 e-value: 6.9E-12 score: 46.0
None	No IPR available	GENE3D	2.60.120.340	Nucleoplasmin core domain	coord: 1..101 e-value: 6.3E-18 score: 66.8
None	No IPR available	PANTHER	PTHR31802	32 KDA HEAT SHOCK PROTEIN-RELATED	coord: 1..100
None	No IPR available	PANTHER	PTHR31802:SF12	HISTONE DEACETYLASE HDT3-LIKE ISOFORM X1	coord: 1..100

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G014690.1	CsaV3_6G014690.1	mRNA