CsaV3_6G014340 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G014340
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr6: 10419482 .. 10420189 (+)
RNA-Seq Expression	CsaV3_6G014340
Synteny	CsaV3_6G014340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGCCTCATCTTTCAGCCAAGTTGAAGTAGCTCGTTCCCTCCAAGATCTTACTTTTGATCAGATCTACATCGAAATTCAATTGATGTTGATAATTTGTTGGTGGGGCCTTGGTGATTCTGTTTATCTCTCGAGTGTAAAAAGGGTGAAAACCAACAGTCTTCAGCTAGAAGAGGGGCGCGCAGTTTGGCCTTGGACCAGGTCAGAGATCTTTTGAGTTGGTTGGCTTTTGCTTGTCAGGTCAGCTAAATATTAAATGATAAAATTGTAACTTTGCTTTAAACTACAGTTACCATCACTTCTTTTGATGATCTCTTTAGCTTTAGAATAGTTTCTGCAGGCAAAATCTGTAACAAAAAAAAGCTAGGGAAGAGTGTCACCCCTTTTAATATATTATTTATAATTATTTACTTCTTTCTCTGGAAGCCTTAAAACAAGTCAACTTAATTCAGTAAAAATGCCTGGAAATGGTTTGAAGGAAATGAGTTGCGAATCCTTTAAAAAACATGGGTTTGCTCTCTTCAAAGCAAGAAGAGACATGAGTCTCCTCAAAAGCCTCATTTGGATTATTTTAAGAGATACCCTTTTAAATGTTTTATCTAGAATGGAGAAATCTGTTCCTTCCTGGAACAAAAGAAACTTGGCTTCACGTGTGAGAAGCCTTGGAAACCGTGAGGGTTTTAGGTCTAAATTTAAGCCCGAGTAG

mRNA sequence

ATGGATGCCTCATCTTTCAGCCAAGTTGAAGTAGCTCGTTCCCTCCAAGATCTTACTTTTGATCAGATCTACATCGAAATTCAATTGATGTTGATAATTTGTTGGTGGGGCCTTGGTGATTCTGTTTATCTCTCGAGTGTAAAAAGGGTGAAAACCAACAGTCTTCAGCTAGAAGAGGGGCGCGCAGTTTGGCCTTGGACCAGCCTTAAAACAAGTCAACTTAATTCAGTAAAAATGCCTGGAAATGGTTTGAAGGAAATGAGTTGCGAATCCTTTAAAAAACATGGGTTTGCTCTCTTCAAAGCAAGAAGAGACATGAGTCTCCTCAAAAGCCTCATTTGGATTATTTTAAGAGATACCCTTTTAAATGTTTTATCTAGAATGGAGAAATCTGTTCCTTCCTGGAACAAAAGAAACTTGGCTTCACGTGTGAGAAGCCTTGGAAACCGTGAGGGTTTTAGGTCTAAATTTAAGCCCGAGTAG

Coding sequence (CDS)

ATGGATGCCTCATCTTTCAGCCAAGTTGAAGTAGCTCGTTCCCTCCAAGATCTTACTTTTGATCAGATCTACATCGAAATTCAATTGATGTTGATAATTTGTTGGTGGGGCCTTGGTGATTCTGTTTATCTCTCGAGTGTAAAAAGGGTGAAAACCAACAGTCTTCAGCTAGAAGAGGGGCGCGCAGTTTGGCCTTGGACCAGCCTTAAAACAAGTCAACTTAATTCAGTAAAAATGCCTGGAAATGGTTTGAAGGAAATGAGTTGCGAATCCTTTAAAAAACATGGGTTTGCTCTCTTCAAAGCAAGAAGAGACATGAGTCTCCTCAAAAGCCTCATTTGGATTATTTTAAGAGATACCCTTTTAAATGTTTTATCTAGAATGGAGAAATCTGTTCCTTCCTGGAACAAAAGAAACTTGGCTTCACGTGTGAGAAGCCTTGGAAACCGTGAGGGTTTTAGGTCTAAATTTAAGCCCGAGTAG

Protein sequence

MDASSFSQVEVARSLQDLTFDQIYIEIQLMLIICWWGLGDSVYLSSVKRVKTNSLQLEEGRAVWPWTSLKTSQLNSVKMPGNGLKEMSCESFKKHGFALFKARRDMSLLKSLIWIILRDTLLNVLSRMEKSVPSWNKRNLASRVRSLGNREGFRSKFKPE*

Homology

[Close]

BLAST of CsaV3_6G014340 vs. NCBI nr
Match: KAE8646894.1 (hypothetical protein Csa_020928 [Cucumis sativus])

HSP 1 Score: 317.8 bits (813), Expect = 5.5e-83
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0


Query: 1   MDASSFSQVEVARSLQDLTFDQIYIEIQLMLIICWWGLGDSVYLSSVKRVKTNSLQLEEG 60
           MDASSFSQVEVARSLQDLTFDQIYIEIQLMLIICWWGLGDSVYLSSVKRVKTNSLQLEEG
Sbjct: 1   MDASSFSQVEVARSLQDLTFDQIYIEIQLMLIICWWGLGDSVYLSSVKRVKTNSLQLEEG 60

Query: 61  RAVWPWTSLKTSQLNSVKMPGNGLKEMSCESFKKHGFALFKARRDMSLLKSLIWIILRDT 120
           RAVWPWTSLKTSQLNSVKMPGNGLKEMSCESFKKHGFALFKARRDMSLLKSLIWIILRDT
Sbjct: 61  RAVWPWTSLKTSQLNSVKMPGNGLKEMSCESFKKHGFALFKARRDMSLLKSLIWIILRDT 120

Query: 121 LLNVLSRMEKSVPSWNKRNLASRVRSLGNREGFRSKFKPE 161
           LLNVLSRMEKSVPSWNKRNLASRVRSLGNREGFRSKFKPE
Sbjct: 121 LLNVLSRMEKSVPSWNKRNLASRVRSLGNREGFRSKFKPE 160

[Close]

BLAST of CsaV3_6G014340 vs. ExPASy TrEMBL
Match: A0A0A0KAW7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G148220 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 2.2e-37
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 79  MPGNGLKEMSCESFKKHGFALFKARRDMSLLKSLIWIILRDTLLNVLSRMEKSVPSWNKR 138
           MPGNGLKEMSCESFKKHGFALFKARRDMSLLKSLIWIILRDTLLNVLSRMEKSVPSWNKR
Sbjct: 1   MPGNGLKEMSCESFKKHGFALFKARRDMSLLKSLIWIILRDTLLNVLSRMEKSVPSWNKR 60

Query: 139 NLASRVRSLGNREGFRSKFKPE 161
           NLASRVRSLGNREGFRSKFKPE
Sbjct: 61  NLASRVRSLGNREGFRSKFKPE 82

[Close]

BLAST of CsaV3_6G014340 vs. ExPASy TrEMBL
Match: A0A0A0KDE8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G148210 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 2.2e-29
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MDASSFSQVEVARSLQDLTFDQIYIEIQLMLIICWWGLGDSVYLSSVKRVKTNSLQLEEG 60
          MDASSFSQVEVARSLQDLTFDQIYIEIQLMLIICWWGLGDSVYLSSVKRVKTNSLQLEEG
Sbjct: 1  MDASSFSQVEVARSLQDLTFDQIYIEIQLMLIICWWGLGDSVYLSSVKRVKTNSLQLEEG 60

Query: 61 RAVWPWT 68
          RAVWPWT
Sbjct: 61 RAVWPWT 67

The following BLAST results are available for this feature:

BLAST of CsaV3_6G014340 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8646894.1	5.5e-83	100.00	hypothetical protein Csa_020928 [Cucumis sativus]	[more]

BLAST of CsaV3_6G014340 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G014340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAW7	2.2e-37	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G148220 PE=4 SV=1	[more]
A0A0A0KDE8	2.2e-29	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G148210 PE=4 SV=1	[more]

BLAST of CsaV3_6G014340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G014340.1	CsaV3_6G014340.1	mRNA