CsaV3_6G013670 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G013670
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	LOB domain-containing protein
Location	chr6: 9817253 .. 9820028 (-)
RNA-Seq Expression	CsaV3_6G013670
Synteny	CsaV3_6G013670

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GCAAAAGAAAGATCTTCTCTCAACAAAATAATAATAATAAACAAAAAAAAAAAATTATTTTGGTGATATGGGGAAAATCTAAAGGGTTCTTCTTTTGTAGGTCCCTCTAAAGATTTGCCATCACTTCTCTATATAACATCTTCCATCTTCTTCCTCATCGCTCCCTACTTTTCCTTTCTCTTTTCTTCTACTTCTCAAGAAAACCTCTGACTCGTATTTCCAAAACCCAATTTTAGCTCAAAATTGGATAGTTATTAAAACTATCTCAATTTGCATTCTCTTAATTAAAGAGAAATGAAGGAGATTAGTGGAAGAAAACAAGGTACATCTCTTTCACCATGTGCAGCTTGCAAGCTTCTCCGTCGTAGATGTGCTCAAGATTGTGTTTTCGCCCCTTACTTCCCCGCCGACGAGCCTCATAAATTTGCTAGTGTTCATAAGGTCTTCGGAGCTAGTAATGTTAACAAGATGCTACAGGTTAGTAAGTCAAATTATGATTTTCTTTAATTACACATTGGTTTTGTTTAATTTCTCTCTTCTTTTGAATATTTCTTTTTGCTTTCTCCCTAATGTTTGGTAATGTAATTAATTAAACTAGTTTCTTTTTAATTTAAGGAAGTTTGGATTATTAATTATAGAGGTGAGAGAGACTTCATTTTTTGGCTTAACCTGCTGAAATAAACTCAAATTAGTGGTTAAAATAATTAGATTATTTGTCACAAAGAGGAGCCAACCATTCTATATTCTCATATTATCCCTACTAACCACACACAAATTGACAAAACAGCCCAATAACTTAAAAAGAGGAAAAAAATAAAGTAGGGTTTTATAAAATATATAAAATTACATGATATTTTTCCATTGGTGTTCCATCGTTTTCTCTTGCTTTTTTCACTTTGATAATAAGCCACGACAAGATTAAACATCTCCTTCCCTCTCTTTCACACACTAGCTAGTAATTTAATACACTAATTATGAGTTACCATGATATTAACTTTTCAAGGCAAAAGAAAAAAATAAAGTTTTCAACTTTTCAAGAACTACAAAACCGACACACTTAACCAATTAAAACTATAACGATAGGACACTAATGATCGTAACTCATTTCATAATTCTTCGAGTTATAAAAGAAAAAAACAAATTATTATTTGAAACTGGATAATTAAATAAGATGGCAATATAAATAATGTTATGTATCTTCTATTTATTTTCCGTTATAGTGGTTAATTACGGTTGAGGAGCCCACTTTTTTCTAAAAAAAAAAAAAGAAAAAAAGAAAAGAAAAAGAAAGTGTGTCTCTACTTTTTGAAAAAGCAAACCCTAAAATTGGTTGGAAGACCAATTCAGGAGATTCCTTAGCGTATGAAAGAGTAAAGAGGGATTGTTTAATTTTGTACTAACTAATTAATCAAACCATACTTTAATTAACCATACCCTTTGGTTAATTAACACTTCATGAAACCAAAGTATAATTTAATTATGTTTTCATTAATTATTTAATCTTCTCAACTTTAACCCTCCATTACCCTTATACCTTTCCGTTAAATTACAATATCAACCTGAACTTTTTTATTCCTTCTTTGGTAGCTCCAAAAGAAAGGTAAGATTCTAAATGTTTTTTTTTTTCAAAAAAAATTATTTTACCATCCTAAATCAATATTATTTGTCTCATTCTAACGTCATAATGACATCTAAAATCCTTTCTTCATATAAAAGTAATGTAAATAGAGTTTGGTATATACATTTCTTTTAAATTTTTTAATAACTACTAATAAAATATATTTGGTTGCTCAATATATTACTAGTAGAGAAAATGGATGCAAATAAGTAGTATAATATAATGTTGTTGAAACATCTTCACTTGTTATTTAGTGACAACAATATTCAAGTACATACGAGAATATTGCTATACAAACTCTATAGTGTTATGAGATAACCTAGAGAAGTTTCTTAATAAGCTCCTCCAAATTGTTTCTCTTTAGATTTACTCTTCTTTAGTTTAATATTCGATACTATCTTGGTAAACATTTCTACCTCAAATAACCTAATTGATAATAGAGAGTTAAAGTAATCATATATTTAATAAAAATGATAAGGTTTCATCGTATTATTTTCAATAAAGTATATTCCCAATTAACAGGAGCTACCAGAACAACAACGAAGCGATGCAGTAAGTTCGATGGTGTATGAAGCAAACGCAAGAGTACGAGATCCCGTTTACGGTTGCGTTGGAGCCATATCATCGTTACAACAACAGATCGATCTCTTGCAAACACAACTAGCAATAGCGCAAGCAGAGGTGGTTCACATGCGGATGCGCCACTTCCCGTCATCCTCTTACAACCCAACGGCGGGCCACTCACCGGAAACCGCCTCACCTTCCAGCAAGATGAACATTCCGGCCCCAAACAAGTCCTATTTTTCCATGGACATGGTTGACCACGACAGCATGGGGGAGACCTTGTGGTCGTCTTGCTAGCTAATTAATTTTAAGCCTTTAGGCGTGCGTTCTTTTGCCTTCACCTCTTTTATTTTATTTTTTCTTCTTCTTATTTTTCCTAATTATCATTATAATGTGCTTTTCTTTATCATTATAATGGGGCTTGCTTTATTGTATGTTTGCTTTTATTAATACTTCTTTTTTCTTCTTTCGCTCTTAATATATATATATATATATATATATGTAACTTTGTAGAAAAGAAAAGAAAAGAAAAAAAAAATCGGTGCTACGCGGAGAGATTATTATGATAATTATTGATAACCATATTGTAAATGC

mRNA sequence

ATGAAGGAGATTAGTGGAAGAAAACAAGGTACATCTCTTTCACCATGTGCAGCTTGCAAGCTTCTCCGTCGTAGATGTGCTCAAGATTGTGTTTTCGCCCCTTACTTCCCCGCCGACGAGCCTCATAAATTTGCTAGTGTTCATAAGGTCTTCGGAGCTAGTAATGTTAACAAGATGCTACAGGAGCTACCAGAACAACAACGAAGCGATGCAGTAAGTTCGATGGTGTATGAAGCAAACGCAAGAGTACGAGATCCCGTTTACGGTTGCGTTGGAGCCATATCATCGTTACAACAACAGATCGATCTCTTGCAAACACAACTAGCAATAGCGCAAGCAGAGGTGGTTCACATGCGGATGCGCCACTTCCCGTCATCCTCTTACAACCCAACGGCGGGCCACTCACCGGAAACCGCCTCACCTTCCAGCAAGATGAACATTCCGGCCCCAAACAAGTCCTATTTTTCCATGGACATGGTTGACCACGACAGCATGGGGGAGACCTTGTGGTCGTCTTGCTAG

Coding sequence (CDS)

ATGAAGGAGATTAGTGGAAGAAAACAAGGTACATCTCTTTCACCATGTGCAGCTTGCAAGCTTCTCCGTCGTAGATGTGCTCAAGATTGTGTTTTCGCCCCTTACTTCCCCGCCGACGAGCCTCATAAATTTGCTAGTGTTCATAAGGTCTTCGGAGCTAGTAATGTTAACAAGATGCTACAGGAGCTACCAGAACAACAACGAAGCGATGCAGTAAGTTCGATGGTGTATGAAGCAAACGCAAGAGTACGAGATCCCGTTTACGGTTGCGTTGGAGCCATATCATCGTTACAACAACAGATCGATCTCTTGCAAACACAACTAGCAATAGCGCAAGCAGAGGTGGTTCACATGCGGATGCGCCACTTCCCGTCATCCTCTTACAACCCAACGGCGGGCCACTCACCGGAAACCGCCTCACCTTCCAGCAAGATGAACATTCCGGCCCCAAACAAGTCCTATTTTTCCATGGACATGGTTGACCACGACAGCATGGGGGAGACCTTGTGGTCGTCTTGCTAG

Protein sequence

MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMRHFPSSSYNPTAGHSPETASPSSKMNIPAPNKSYFSMDMVDHDSMGETLWSSC*

Homology

[Close]

BLAST of CsaV3_6G013670 vs. NCBI nr
Match: XP_004150042.1 (LOB domain-containing protein 4 [Cucumis sativus] >KGN46813.1 hypothetical protein Csa_020952 [Cucumis sativus])

HSP 1 Score: 350.1 bits (897), Expect = 1.1e-92
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 1   MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60
           MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML
Sbjct: 1   MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60

Query: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120
           QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM
Sbjct: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120

Query: 121 RHFPSSSYNPTAGHSPETASPSSKMNIPAPNKSYFSMDMVDHDSMGETLWSSC 174
           RHFPSSSYNPTAGHSPETASPSSKMNIPAPNKSYFSMDMVDHDSMGETLWSSC
Sbjct: 121 RHFPSSSYNPTAGHSPETASPSSKMNIPAPNKSYFSMDMVDHDSMGETLWSSC 173

[Close]

BLAST of CsaV3_6G013670 vs. NCBI nr
Match: KAA0054642.1 (LOB domain-containing protein 4-like [Cucumis melo var. makuwa] >TYK08620.1 LOB domain-containing protein 4-like [Cucumis melo var. makuwa])

HSP 1 Score: 341.3 bits (874), Expect = 5.0e-90
Identity = 169/173 (97.69%), Postives = 169/173 (97.69%), Query Frame = 0


Query: 1   MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60
           MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML
Sbjct: 1   MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60

Query: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120
           QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM
Sbjct: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120

Query: 121 RHFPSSSYNPTAGHSPETASPSSKMNIPAPNKSYFSMDMVDHDSMGETLWSSC 174
           RH PSSSYNPT GHS ETASPSSKMNIP PNKSYFSMDMVDHDSMGETLWSSC
Sbjct: 121 RHIPSSSYNPTMGHSSETASPSSKMNIPVPNKSYFSMDMVDHDSMGETLWSSC 173

[Close]

BLAST of CsaV3_6G013670 vs. NCBI nr
Match: XP_038902133.1 (LOB domain-containing protein 4-like [Benincasa hispida])

HSP 1 Score: 331.3 bits (848), Expect = 5.2e-87
Identity = 164/173 (94.80%), Postives = 168/173 (97.11%), Query Frame = 0


Query: 1   MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60
           MKEI+GRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML
Sbjct: 1   MKEINGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60

Query: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120
           QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQID+LQTQLAIAQAEVVHMRM
Sbjct: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLAIAQAEVVHMRM 120

Query: 121 RHFPSSSYNPTAGHSPETASPSSKMNIPAPNKSYFSMDMVDHDSMGETLWSSC 174
           R FPSSS N T GHSPETASPS KMNIPAPNKSYFSMDMVDHD+MGE+LWSSC
Sbjct: 121 RQFPSSSCNLTIGHSPETASPSGKMNIPAPNKSYFSMDMVDHDNMGESLWSSC 173

[Close]

BLAST of CsaV3_6G013670 vs. NCBI nr
Match: XP_022149611.1 (LOB domain-containing protein 4 [Momordica charantia])

HSP 1 Score: 294.7 bits (753), Expect = 5.4e-76
Identity = 151/173 (87.28%), Postives = 159/173 (91.91%), Query Frame = 0


Query: 1   MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60
           MKE SGRKQGT LSPCAACKLLRRRCA DCVFAPYFPADEPHKFASVHKVFGASNVNKML
Sbjct: 1   MKESSGRKQGT-LSPCAACKLLRRRCAHDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60

Query: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120
           QELPE QRSDAVSSMVYEANAR+RDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM
Sbjct: 61  QELPEHQRSDAVSSMVYEANARMRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120

Query: 121 RHFPSSSYNPTAGHSPETASPSSKMNIPAPNKSYFSMDMVDHDSMGETLWSSC 174
           R FPS+S  P+A HSPETA    K+NIPA NKS+F+MDMV HD+MGE+LWSSC
Sbjct: 121 RQFPSTS-TPSAAHSPETA---GKLNIPAQNKSFFTMDMVGHDNMGESLWSSC 168

[Close]

BLAST of CsaV3_6G013670 vs. NCBI nr
Match: XP_022947417.1 (LOB domain-containing protein 4-like [Cucurbita moschata] >XP_022970811.1 LOB domain-containing protein 4-like [Cucurbita maxima] >KAG6604717.1 LOB domain-containing protein 4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034846.1 LOB domain-containing protein 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 292.7 bits (748), Expect = 2.0e-75
Identity = 152/173 (87.86%), Postives = 159/173 (91.91%), Query Frame = 0


Query: 1   MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60
           MKE SGRKQG +++PCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML
Sbjct: 1   MKE-SGRKQG-AVAPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60

Query: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120
           QELPE QRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQT+LAIAQAEVVHMRM
Sbjct: 61  QELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTELAIAQAEVVHMRM 120

Query: 121 RHFPSSSYNPTAGHSPETASPSSKMNIPAPNKSYFSMDMVDHDSMGETLWSSC 174
           R F SSS NPTAGHSPETASPS K+NIP  NKSYFSM     D+MGE+LWSSC
Sbjct: 121 RQFTSSSSNPTAGHSPETASPSGKINIPPQNKSYFSM-----DNMGESLWSSC 166

[Close]

BLAST of CsaV3_6G013670 vs. ExPASy Swiss-Prot
Match: Q9SHE9 (LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 4.3e-60
Identity = 127/175 (72.57%), Postives = 142/175 (81.14%), Query Frame = 0


Query: 1   MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60
           MKE S RKQG + SPCAACKLLRRRCAQDCVF+PYFPADEP KFA+VH+VFGASNVNKML
Sbjct: 1   MKE-SSRKQGAA-SPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKML 60

Query: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120
           QELP  QR DAVSSMVYEANARVRDPVYGCVGAISSLQQQID+LQ QLA+AQAEVVH+R+
Sbjct: 61  QELPIHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRV 120

Query: 121 R---HFPSSSYNPTAGHSPETASPSSKMNIPAPNKSYFS-MDMVDHDSMGETLWS 172
           R   +FP     P +  S  + SPSSK   P  NK  FS MD+VD  S+GE++WS
Sbjct: 121 RQSTNFPGHGLCPDSPSS--SGSPSSKQVSPQDNKGMFSHMDIVDEASLGESMWS 171

[Close]

BLAST of CsaV3_6G013670 vs. ExPASy Swiss-Prot
Match: Q9SA51 (LOB domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=LBD3 PE=2 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 2.3e-45
Identity = 97/170 (57.06%), Postives = 120/170 (70.59%), Query Frame = 0


Query: 6   GRKQGTSLSPCAACKLLRRRCAQD-CVFAPYFPADEPHKFASVHKVFGASNVNKMLQELP 65
           G + G ++SPCA CKLLRR+C +D CVFAPYFPA EP+KFA VHK+FGASNVNKMLQEL 
Sbjct: 5   GHRHGRTVSPCAGCKLLRRKCVKDSCVFAPYFPAKEPYKFAIVHKIFGASNVNKMLQELS 64

Query: 66  EQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMRHFP 125
           E  RSDAV SMVYEANAR++DPVYGCVG ISSL +Q++ LQTQLA AQAE++H+R  H  
Sbjct: 65  ENHRSDAVDSMVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAELIHIRTLH-- 124

Query: 126 SSSYNPTAGHSPETASPSSKMNIPAPNKSYFS---MDMVDHDSMGETLWS 172
                    H+      +S +  P+ NK ++S   M +   D  G+ LWS
Sbjct: 125 -------RIHTKPPPYTASTVTFPS-NKDFYSDIDMAVAYTDDAGDFLWS 164

[Close]

BLAST of CsaV3_6G013670 vs. ExPASy Swiss-Prot
Match: Q8LBW3 (LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 SV=2)

HSP 1 Score: 178.7 bits (452), Expect = 5.6e-44
Identity = 84/116 (72.41%), Postives = 102/116 (87.93%), Query Frame = 0


Query: 10  GTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEQQRS 69
           G   SPCA+CKLLRRRCA+DC+FAPYFP D+PHKFA VHKVFGASNV+KMLQELP  QR+
Sbjct: 3   GPGSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRA 62

Query: 70  DAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMRHFPS 126
           DAV+S+V+EANARVRDPVYGCVGAIS LQ Q+  LQ QLA+AQAE++ ++M++ P+
Sbjct: 63  DAVNSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQNEPT 118

[Close]

BLAST of CsaV3_6G013670 vs. ExPASy Swiss-Prot
Match: Q8L5T5 (LOB domain-containing protein 15 OS=Arabidopsis thaliana OX=3702 GN=LBD15 PE=1 SV=2)

HSP 1 Score: 159.8 bits (403), Expect = 2.7e-38
Identity = 81/153 (52.94%), Postives = 107/153 (69.93%), Query Frame = 0


Query: 12  SLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEQQRSDA 71
           +++PCAACKLLRRRCAQ+C F+PYF   EPHKFASVHKVFGASNV+KML E+PE QR+DA
Sbjct: 42  TITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADA 101

Query: 72  VSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMRH------FPS 131
            +S+VYEAN R+RDPVYGC+GAIS+LQQQ+  LQ +L   ++E++  + R        PS
Sbjct: 102 ANSLVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEILKYKQREAVATLIVPS 161

Query: 132 SS----YNPTAGHSPETASPSSKMNIPAPNKSY 155
           +S    ++ + G S     P      P P  ++
Sbjct: 162 NSQVAGFHNSGGVSVIAPPPQRPTTPPQPTTAH 194

[Close]

BLAST of CsaV3_6G013670 vs. ExPASy Swiss-Prot
Match: Q9LQR0 (LOB domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=LBD1 PE=2 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 5.1e-37
Identity = 74/109 (67.89%), Postives = 88/109 (80.73%), Query Frame = 0


Query: 13  LSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEQQRSDAV 72
           LSPCAACK+LRRRCA+ CV APYFP  +P KF   H+VFGASN+ K LQELPE QR+DAV
Sbjct: 31  LSPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAV 90

Query: 73  SSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMR 122
           +SMVYEA AR+RDPVYGC GAI  LQ+Q+  LQ QLA AQ E+V+M+ +
Sbjct: 91  NSMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQLAKAQVEMVNMQFQ 139

[Close]

BLAST of CsaV3_6G013670 vs. ExPASy TrEMBL
Match: A0A0A0KBA8 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G139130 PE=3 SV=1)

HSP 1 Score: 350.1 bits (897), Expect = 5.2e-93
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 1   MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60
           MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML
Sbjct: 1   MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60

Query: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120
           QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM
Sbjct: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120

Query: 121 RHFPSSSYNPTAGHSPETASPSSKMNIPAPNKSYFSMDMVDHDSMGETLWSSC 174
           RHFPSSSYNPTAGHSPETASPSSKMNIPAPNKSYFSMDMVDHDSMGETLWSSC
Sbjct: 121 RHFPSSSYNPTAGHSPETASPSSKMNIPAPNKSYFSMDMVDHDSMGETLWSSC 173

[Close]

BLAST of CsaV3_6G013670 vs. ExPASy TrEMBL
Match: A0A5D3CBA3 (LOB domain-containing protein 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3734G00510 PE=3 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 2.4e-90
Identity = 169/173 (97.69%), Postives = 169/173 (97.69%), Query Frame = 0


Query: 1   MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60
           MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML
Sbjct: 1   MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60

Query: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120
           QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM
Sbjct: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120

Query: 121 RHFPSSSYNPTAGHSPETASPSSKMNIPAPNKSYFSMDMVDHDSMGETLWSSC 174
           RH PSSSYNPT GHS ETASPSSKMNIP PNKSYFSMDMVDHDSMGETLWSSC
Sbjct: 121 RHIPSSSYNPTMGHSSETASPSSKMNIPVPNKSYFSMDMVDHDSMGETLWSSC 173

[Close]

BLAST of CsaV3_6G013670 vs. ExPASy TrEMBL
Match: A0A6J1D8X3 (LOB domain-containing protein 4 OS=Momordica charantia OX=3673 GN=LOC111017996 PE=3 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 2.6e-76
Identity = 151/173 (87.28%), Postives = 159/173 (91.91%), Query Frame = 0


Query: 1   MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60
           MKE SGRKQGT LSPCAACKLLRRRCA DCVFAPYFPADEPHKFASVHKVFGASNVNKML
Sbjct: 1   MKESSGRKQGT-LSPCAACKLLRRRCAHDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60

Query: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120
           QELPE QRSDAVSSMVYEANAR+RDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM
Sbjct: 61  QELPEHQRSDAVSSMVYEANARMRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120

Query: 121 RHFPSSSYNPTAGHSPETASPSSKMNIPAPNKSYFSMDMVDHDSMGETLWSSC 174
           R FPS+S  P+A HSPETA    K+NIPA NKS+F+MDMV HD+MGE+LWSSC
Sbjct: 121 RQFPSTS-TPSAAHSPETA---GKLNIPAQNKSFFTMDMVGHDNMGESLWSSC 168

[Close]

BLAST of CsaV3_6G013670 vs. ExPASy TrEMBL
Match: A0A6J1I1K8 (LOB domain-containing protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC111469678 PE=3 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 9.9e-76
Identity = 152/173 (87.86%), Postives = 159/173 (91.91%), Query Frame = 0


Query: 1   MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60
           MKE SGRKQG +++PCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML
Sbjct: 1   MKE-SGRKQG-AVAPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60

Query: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120
           QELPE QRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQT+LAIAQAEVVHMRM
Sbjct: 61  QELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTELAIAQAEVVHMRM 120

Query: 121 RHFPSSSYNPTAGHSPETASPSSKMNIPAPNKSYFSMDMVDHDSMGETLWSSC 174
           R F SSS NPTAGHSPETASPS K+NIP  NKSYFSM     D+MGE+LWSSC
Sbjct: 121 RQFTSSSSNPTAGHSPETASPSGKINIPPQNKSYFSM-----DNMGESLWSSC 166

[Close]

BLAST of CsaV3_6G013670 vs. ExPASy TrEMBL
Match: A0A6J1G6E3 (LOB domain-containing protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC111451283 PE=3 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 9.9e-76
Identity = 152/173 (87.86%), Postives = 159/173 (91.91%), Query Frame = 0


Query: 1   MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60
           MKE SGRKQG +++PCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML
Sbjct: 1   MKE-SGRKQG-AVAPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60

Query: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120
           QELPE QRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQT+LAIAQAEVVHMRM
Sbjct: 61  QELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTELAIAQAEVVHMRM 120

Query: 121 RHFPSSSYNPTAGHSPETASPSSKMNIPAPNKSYFSMDMVDHDSMGETLWSSC 174
           R F SSS NPTAGHSPETASPS K+NIP  NKSYFSM     D+MGE+LWSSC
Sbjct: 121 RQFTSSSSNPTAGHSPETASPSGKINIPPQNKSYFSM-----DNMGESLWSSC 166

[Close]

BLAST of CsaV3_6G013670 vs. TAIR 10
Match: AT1G31320.1 (LOB domain-containing protein 4 )

HSP 1 Score: 232.3 bits (591), Expect = 3.0e-61
Identity = 127/175 (72.57%), Postives = 142/175 (81.14%), Query Frame = 0


Query: 1   MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60
           MKE S RKQG + SPCAACKLLRRRCAQDCVF+PYFPADEP KFA+VH+VFGASNVNKML
Sbjct: 1   MKE-SSRKQGAA-SPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKML 60

Query: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120
           QELP  QR DAVSSMVYEANARVRDPVYGCVGAISSLQQQID+LQ QLA+AQAEVVH+R+
Sbjct: 61  QELPIHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRV 120

Query: 121 R---HFPSSSYNPTAGHSPETASPSSKMNIPAPNKSYFS-MDMVDHDSMGETLWS 172
           R   +FP     P +  S  + SPSSK   P  NK  FS MD+VD  S+GE++WS
Sbjct: 121 RQSTNFPGHGLCPDSPSS--SGSPSSKQVSPQDNKGMFSHMDIVDEASLGESMWS 171

[Close]

BLAST of CsaV3_6G013670 vs. TAIR 10
Match: AT1G16530.1 (ASYMMETRIC LEAVES 2-like 9 )

HSP 1 Score: 183.3 bits (464), Expect = 1.6e-46
Identity = 97/170 (57.06%), Postives = 120/170 (70.59%), Query Frame = 0


Query: 6   GRKQGTSLSPCAACKLLRRRCAQD-CVFAPYFPADEPHKFASVHKVFGASNVNKMLQELP 65
           G + G ++SPCA CKLLRR+C +D CVFAPYFPA EP+KFA VHK+FGASNVNKMLQEL 
Sbjct: 5   GHRHGRTVSPCAGCKLLRRKCVKDSCVFAPYFPAKEPYKFAIVHKIFGASNVNKMLQELS 64

Query: 66  EQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMRHFP 125
           E  RSDAV SMVYEANAR++DPVYGCVG ISSL +Q++ LQTQLA AQAE++H+R  H  
Sbjct: 65  ENHRSDAVDSMVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAELIHIRTLH-- 124

Query: 126 SSSYNPTAGHSPETASPSSKMNIPAPNKSYFS---MDMVDHDSMGETLWS 172
                    H+      +S +  P+ NK ++S   M +   D  G+ LWS
Sbjct: 125 -------RIHTKPPPYTASTVTFPS-NKDFYSDIDMAVAYTDDAGDFLWS 164

[Close]

BLAST of CsaV3_6G013670 vs. TAIR 10
Match: AT2G30130.1 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 178.7 bits (452), Expect = 4.0e-45
Identity = 84/116 (72.41%), Postives = 102/116 (87.93%), Query Frame = 0


Query: 10  GTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEQQRS 69
           G   SPCA+CKLLRRRCA+DC+FAPYFP D+PHKFA VHKVFGASNV+KMLQELP  QR+
Sbjct: 3   GPGSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRA 62

Query: 70  DAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMRHFPS 126
           DAV+S+V+EANARVRDPVYGCVGAIS LQ Q+  LQ QLA+AQAE++ ++M++ P+
Sbjct: 63  DAVNSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQNEPT 118

[Close]

BLAST of CsaV3_6G013670 vs. TAIR 10
Match: AT2G40470.1 (LOB domain-containing protein 15 )

HSP 1 Score: 159.8 bits (403), Expect = 1.9e-39
Identity = 81/153 (52.94%), Postives = 107/153 (69.93%), Query Frame = 0


Query: 12  SLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEQQRSDA 71
           +++PCAACKLLRRRCAQ+C F+PYF   EPHKFASVHKVFGASNV+KML E+PE QR+DA
Sbjct: 42  TITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADA 101

Query: 72  VSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMRH------FPS 131
            +S+VYEAN R+RDPVYGC+GAIS+LQQQ+  LQ +L   ++E++  + R        PS
Sbjct: 102 ANSLVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEILKYKQREAVATLIVPS 161

Query: 132 SS----YNPTAGHSPETASPSSKMNIPAPNKSY 155
           +S    ++ + G S     P      P P  ++
Sbjct: 162 NSQVAGFHNSGGVSVIAPPPQRPTTPPQPTTAH 194

[Close]

BLAST of CsaV3_6G013670 vs. TAIR 10
Match: AT1G07900.1 (LOB domain-containing protein 1 )

HSP 1 Score: 155.6 bits (392), Expect = 3.6e-38
Identity = 74/109 (67.89%), Postives = 88/109 (80.73%), Query Frame = 0


Query: 13  LSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEQQRSDAV 72
           LSPCAACK+LRRRCA+ CV APYFP  +P KF   H+VFGASN+ K LQELPE QR+DAV
Sbjct: 31  LSPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAV 90

Query: 73  SSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMR 122
           +SMVYEA AR+RDPVYGC GAI  LQ+Q+  LQ QLA AQ E+V+M+ +
Sbjct: 91  NSMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQLAKAQVEMVNMQFQ 139

The following BLAST results are available for this feature:

BLAST of CsaV3_6G013670 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004150042.1	1.1e-92	100.00	LOB domain-containing protein 4 [Cucumis sativus] >KGN46813.1 hypothetical prote...	[more]
KAA0054642.1	5.0e-90	97.69	LOB domain-containing protein 4-like [Cucumis melo var. makuwa] >TYK08620.1 LOB ...	[more]
XP_038902133.1	5.2e-87	94.80	LOB domain-containing protein 4-like [Benincasa hispida]	[more]
XP_022149611.1	5.4e-76	87.28	LOB domain-containing protein 4 [Momordica charantia]	[more]
XP_022947417.1	2.0e-75	87.86	LOB domain-containing protein 4-like [Cucurbita moschata] >XP_022970811.1 LOB do...	[more]

BLAST of CsaV3_6G013670 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SHE9	4.3e-60	72.57	LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=...	[more]
Q9SA51	2.3e-45	57.06	LOB domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=LBD3 PE=2 SV=...	[more]
Q8LBW3	5.6e-44	72.41	LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 S...	[more]
Q8L5T5	2.7e-38	52.94	LOB domain-containing protein 15 OS=Arabidopsis thaliana OX=3702 GN=LBD15 PE=1 S...	[more]
Q9LQR0	5.1e-37	67.89	LOB domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=LBD1 PE=2 SV=...	[more]

BLAST of CsaV3_6G013670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KBA8	5.2e-93	100.00	LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G139130 PE=3 SV...	[more]
A0A5D3CBA3	2.4e-90	97.69	LOB domain-containing protein 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A6J1D8X3	2.6e-76	87.28	LOB domain-containing protein 4 OS=Momordica charantia OX=3673 GN=LOC111017996 P...	[more]
A0A6J1I1K8	9.9e-76	87.86	LOB domain-containing protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC111469678...	[more]
A0A6J1G6E3	9.9e-76	87.86	LOB domain-containing protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC1114512...	[more]

BLAST of CsaV3_6G013670 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G31320.1	3.0e-61	72.57	LOB domain-containing protein 4	[more]
AT1G16530.1	1.6e-46	57.06	ASYMMETRIC LEAVES 2-like 9	[more]
AT2G30130.1	4.0e-45	72.41	Lateral organ boundaries (LOB) domain family protein	[more]
AT2G40470.1	1.9e-39	52.94	LOB domain-containing protein 15	[more]
AT1G07900.1	3.6e-38	67.89	LOB domain-containing protein 1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 94..114
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 126..147
None	No IPR available	PANTHER	PTHR31301	LOB DOMAIN-CONTAINING PROTEIN 4-RELATED	coord: 3..168
None	No IPR available	PANTHER	PTHR31301:SF58	LOB DOMAIN-CONTAINING PROTEIN 3	coord: 3..168
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 15..112 e-value: 1.0E-43 score: 147.9
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 14..115 score: 27.38965

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G013670.1	CsaV3_6G013670.1	mRNA