CsaV3_6G008040 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G008040
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6: 6454767 .. 6456610 (-)
RNA-Seq ExpressionCsaV3_6G008040
SyntenyCsaV3_6G008040
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAAGACGAAGATTCAAAGATTGGTTCATAATTTTCAGTGTGTGTGTTTGATTCTTCAAATTCAGGTTAATTCTTTGCTCCTCATCCTCAATTTTTTTTTTATATCCCAACCAAAAATTAATTTAACTTTTGTTCTTCCAAAAGAATTTCTTTTTCTTTTTCATTTTTCAGATAAGTATTCCTTATAAATAAATAAGAACAATTTTTTTTTCTGAGAAAATAAAATTAATTTCTTTAAAATCTTTCTCGAATAAATCCCAAATTTAGTCTTTCAATATTAAATACTTAATTTTTGAAGAAAACTTCTGGATTTTCTATTTTAATGGAATAATAATAATAATAATCTGTTCTTGGAAATAAATTAACCAAAACAAAATAATGTAAGGTTCTATATATAATTTATCTATTCAAGATTATTGTTTTCTTCTTTTATATATATAAAAATTTAGAGTGTGCTTTTTTTTCTTTTATAAATATGCAGGTGGGAAGTTTTGAGGAGAAGAGTGGTTTAATTGCAAGATTGAATTTGACTTTCATTTCTTCAATTTTGAGGTGTGTGTATGTTTTGTTTTGTTTTTTTTTTTTTTAATAATTTATATAAATAATTTGTAGAAAAGAAAATGAGTGTAATATTTAGTAATTTTTGTGAAGTTGATATGGAAAATGAAAACTGTTCCATCACTGCATTTAAATTTAATGGATGGTAAGTTAAAAGAAGAAACAACAATCTATCCATTGCAAAATTTGTGGTCAATATTGAGAACCAAATGCCAATTCCATCAATCTCCATAATTCTCCAATAATTTCACCATCATATATTATTACTATTTCTTTCCTTTCTCACAATTAATTTCTCCCCTGTTTTTTTTATATATTTTTAAAGATAATATTTAAATTTTAAGTCGAAAGATACTACCATTATAATATAAAGACACTAGTCTATCGTTATCTATCGCAAGCAATTATAGATAGACGATATATTTTGCATATATTTTTAAAAGACATCCTTTAATTTACTTTCTATCAAAATCTTAAAATTTGTGTAAACTTTTGAAAACAAAAAAATTGTACTAAAAATTCAGTCCTTGTGTGCTTGAAAATTAAATTATGAAAACTACGGTAAAGAATAGAAAAGAAATAAACATGAGAATGTTACAAAAACATATTCTAAAAACGTATATATTGTTTTATAGATTTGAATGCGAATTTAAATTAAATATTTGTGTTCAAAGAGAAAAAAAAGAAGATGAAAATCATAATTTGAAAATTGTGAGGAGGGAACATAAGTTTCAAAACTAGTGAGCGAAATACAAAATTGTTTATTAATTTGCTTATGGAAATTATTAGTAATCTAACAAGTTCATCTATGTTTGGCTCCTCCATCTCTCTCTCTATATGCATATTGATGAAGACAAATAACAAAAGACTTCAATTTTCTCAAACATGTAAATCAAACAAAGACAGACTCCCCAGTCCCCAACTAGGAGGTTTGGCTTCATAATCCAAAGTTTTATTTTGTTATGTACATCCAGATGTAGCAAATTGAGGCGGGGTATCCATGGATATTTAATTAAGCTTTTAGAAAACCAAAACTAGATGTGCATTAGAAAGCTAGTGAATCTGTGTAAAGAAATGTTGCAGGTGGAAGAAGCTTGCTCGATAGAGATGAAGTAAAATTTTGTTTTGACATTTGATGTCGAAGAGTATAATGTATTTTCTTAGTTATTTAAGTGCCCACTAACATTCCAAGTGCTTAAAAACATCTTCTTAGTTAAGAAAGATGTTTTCTGTTGGGCTGCAGCTTTATTCTGTCTTCTACTTTGGCAACTCTTCTTGTTAG

mRNA sequence

ATGAAGAAGACGAAGATTCAAAGATTGGTTCATAATTTTCAGTGTGTGTGTTTGATTCTTCAAATTCAGGTGGGAAGTTTTGAGGAGAAGAGTGGTTTAATTGCAAGATTGAATTTGACTTTCATTTCTTCAATTTTGAGAAAGATGTTTTCTGTTGGGCTGCAGCTTTATTCTGTCTTCTACTTTGGCAACTCTTCTTGTTAG

Coding sequence (CDS)

ATGAAGAAGACGAAGATTCAAAGATTGGTTCATAATTTTCAGTGTGTGTGTTTGATTCTTCAAATTCAGGTGGGAAGTTTTGAGGAGAAGAGTGGTTTAATTGCAAGATTGAATTTGACTTTCATTTCTTCAATTTTGAGAAAGATGTTTTCTGTTGGGCTGCAGCTTTATTCTGTCTTCTACTTTGGCAACTCTTCTTGTTAG

Protein sequence

MKKTKIQRLVHNFQCVCLILQIQVGSFEEKSGLIARLNLTFISSILRKMFSVGLQLYSVFYFGNSSC*
Homology
[Close]
BLAST of CsaV3_6G008040 vs. NCBI nr
Match: KGN46443.1 (hypothetical protein Csa_004930 [Cucumis sativus])

HSP 1 Score: 133.7 bits (335), Expect = 6.2e-28
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0 

Query: 1  MKKTKIQRLVHNFQCVCLILQIQVGSFEEKSGLIARLNLTFISSILRKMFSVGLQLYSVF 60
          MKKTKIQRLVHNFQCVCLILQIQVGSFEEKSGLIARLNLTFISSILRKMFSVGLQLYSVF
Sbjct: 1  MKKTKIQRLVHNFQCVCLILQIQVGSFEEKSGLIARLNLTFISSILRKMFSVGLQLYSVF 60

Query: 61 YFGNSSC 68
          YFGNSSC
Sbjct: 61 YFGNSSC 67

[Close]
BLAST of CsaV3_6G008040 vs. ExPASy TrEMBL
Match: A0A0A0KAE6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G093630 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 3.0e-28
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0 

Query: 1  MKKTKIQRLVHNFQCVCLILQIQVGSFEEKSGLIARLNLTFISSILRKMFSVGLQLYSVF 60
          MKKTKIQRLVHNFQCVCLILQIQVGSFEEKSGLIARLNLTFISSILRKMFSVGLQLYSVF
Sbjct: 1  MKKTKIQRLVHNFQCVCLILQIQVGSFEEKSGLIARLNLTFISSILRKMFSVGLQLYSVF 60

Query: 61 YFGNSSC 68
          YFGNSSC
Sbjct: 61 YFGNSSC 67

The following BLAST results are available for this feature:
BLAST of CsaV3_6G008040 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN46443.16.2e-28100.00hypothetical protein Csa_004930 [Cucumis sativus][more]
BLAST of CsaV3_6G008040 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G008040 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KAE63.0e-28100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G093630 PE=4 SV=1[more]
BLAST of CsaV3_6G008040 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G008040.1CsaV3_6G008040.1mRNA