CsaV3_6G005840 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G005840
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	RING-H2 finger protein ATL5-like
Location	chr6: 5006071 .. 5007013 (+)
RNA-Seq Expression	CsaV3_6G005840
Synteny	CsaV3_6G005840

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGGGTTCTGGTATGAACTTGATTACCACTGTTATTGGGTTTGGAATGAGTGCTACATTCATAGTGTTCGTCTGTACAAGAATCATTTGTGGTCGACTTCGTTCAGCTCAATCCAATACCCCCAATTATGAGATTGAATCCAGGCTTGATCTTGAGCAGCAGGTAAGAAATACTCTCATCTCTCTTAATCTGGATCTGCACACTGTGTTTCTATTTACTTCTAGATCGTGAATCCCATTGGTTAATCACCACAGTATAGTGATGTAGCCAAGGATTGGAATGGTACCATCGTCTTAGGCATCTATATGTCAAAATGACGAGCCTCTTGGTTCTTTATGTTGTTTGATGCCAGCCAGAGTCCCGTGCGAGTGGCCTCGAACCAGTTCTCATAGCTGCTATACCAACAATGACGTTCGATCGAGAGGCTTTCAGTTCTATAGAAGATGCTCAGTGAGTACAACTTTCAATTCATTAGCATATCAGCTGCAGAAGAATAGATAATTAGGCTTACAGTTTTGTAGAAGATGTTCAGTTACTGATAGATAGATAACCTGACCCACTAAACTATGGTTCATTGCGCTCCACTTTCAGATGTTCAATCTGTTTGGGTGAGTATGAAGAGAAGGAAGTACTGAGAATAATGCCCAAATGTGGTCACAGTTTTCATCTCACTTGCATTGATGTATGGTTGAGAAAGCAATCTACATGCCCAGTCTGCAGGCTGCCACTGCAAGACTCCTTTAGAACAAAACCTGCAAGACCAATGACAGTGAGCAGAGATCAGTCTTTTGATGGTTCTGAGATTTCAACTGATCATCATTCTCAACACTGGCTTCTACCTGGCCCCAATCGTTCGGAGGGCAACACAAGCAACCAATCACAGCTTCAACCCATTCCAGTAAACCCCGCAGCTCAAAGAGAGATGGAAACAATACAATGA

mRNA sequence

ATGACGGGTTCTGGTATGAACTTGATTACCACTGTTATTGGGTTTGGAATGAGTGCTACATTCATAGTGTTCGTCTGTACAAGAATCATTTGTGGTCGACTTCGTTCAGCTCAATCCAATACCCCCAATTATGAGATTGAATCCAGGCTTGATCTTGAGCAGCAGCCAGAGTCCCGTGCGAGTGGCCTCGAACCAGTTCTCATAGCTGCTATACCAACAATGACGTTCGATCGAGAGGCTTTCAGTTCTATAGAAGATGCTCAATGTTCAATCTGTTTGGGTGAGTATGAAGAGAAGGAAGTACTGAGAATAATGCCCAAATGTGGTCACAGTTTTCATCTCACTTGCATTGATGTATGGTTGAGAAAGCAATCTACATGCCCAGTCTGCAGGCTGCCACTGCAAGACTCCTTTAGAACAAAACCTGCAAGACCAATGACAGTGAGCAGAGATCAGTCTTTTGATGGTTCTGAGATTTCAACTGATCATCATTCTCAACACTGGCTTCTACCTGGCCCCAATCGTTCGGAGGGCAACACAAGCAACCAATCACAGCTTCAACCCATTCCAGTAAACCCCGCAGCTCAAAGAGAGATGGAAACAATACAATGA

Coding sequence (CDS)

ATGACGGGTTCTGGTATGAACTTGATTACCACTGTTATTGGGTTTGGAATGAGTGCTACATTCATAGTGTTCGTCTGTACAAGAATCATTTGTGGTCGACTTCGTTCAGCTCAATCCAATACCCCCAATTATGAGATTGAATCCAGGCTTGATCTTGAGCAGCAGCCAGAGTCCCGTGCGAGTGGCCTCGAACCAGTTCTCATAGCTGCTATACCAACAATGACGTTCGATCGAGAGGCTTTCAGTTCTATAGAAGATGCTCAATGTTCAATCTGTTTGGGTGAGTATGAAGAGAAGGAAGTACTGAGAATAATGCCCAAATGTGGTCACAGTTTTCATCTCACTTGCATTGATGTATGGTTGAGAAAGCAATCTACATGCCCAGTCTGCAGGCTGCCACTGCAAGACTCCTTTAGAACAAAACCTGCAAGACCAATGACAGTGAGCAGAGATCAGTCTTTTGATGGTTCTGAGATTTCAACTGATCATCATTCTCAACACTGGCTTCTACCTGGCCCCAATCGTTCGGAGGGCAACACAAGCAACCAATCACAGCTTCAACCCATTCCAGTAAACCCCGCAGCTCAAAGAGAGATGGAAACAATACAATGA

Protein sequence

MTGSGMNLITTVIGFGMSATFIVFVCTRIICGRLRSAQSNTPNYEIESRLDLEQQPESRASGLEPVLIAAIPTMTFDREAFSSIEDAQCSICLGEYEEKEVLRIMPKCGHSFHLTCIDVWLRKQSTCPVCRLPLQDSFRTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPNRSEGNTSNQSQLQPIPVNPAAQREMETIQ*

Homology

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BLAST of CsaV3_6G005840 vs. NCBI nr
Match: XP_004153610.1 (RING-H2 finger protein ATL5 [Cucumis sativus] >KGN46203.1 hypothetical protein Csa_004984 [Cucumis sativus])

HSP 1 Score: 412.9 bits (1060), Expect = 1.6e-111
Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 0


Query: 1   MTGSGMNLITTVIGFGMSATFIVFVCTRIICGRLRSAQSNTPNYEIESRLDLEQQPESRA 60
           MTGSGMNLITTVIGFGMSATFIVFVCTRIICGRLRSAQSNTPNYEIESRLDLEQQPESRA
Sbjct: 1   MTGSGMNLITTVIGFGMSATFIVFVCTRIICGRLRSAQSNTPNYEIESRLDLEQQPESRA 60

Query: 61  SGLEPVLIAAIPTMTFDREAFSSIEDAQCSICLGEYEEKEVLRIMPKCGHSFHLTCIDVW 120
           SGLEPVLIAAIPTMTFDREAFSSIEDAQCSICLGEYEEKEVLRIMPKCGHSFHLTCIDVW
Sbjct: 61  SGLEPVLIAAIPTMTFDREAFSSIEDAQCSICLGEYEEKEVLRIMPKCGHSFHLTCIDVW 120

Query: 121 LRKQSTCPVCRLPLQDSFRTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPNRSEGNT 180
           LRKQSTCPVCRLPLQDSFRTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPNRSEGNT
Sbjct: 121 LRKQSTCPVCRLPLQDSFRTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPNRSEGNT 180

Query: 181 SNQSQLQPIPVNPAAQREMETIQ 204
           SNQSQLQPIPVNPAAQREMETIQ
Sbjct: 181 SNQSQLQPIPVNPAAQREMETIQ 203

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BLAST of CsaV3_6G005840 vs. NCBI nr
Match: XP_008460164.1 (PREDICTED: RING-H2 finger protein ATL5-like [Cucumis melo] >KAA0040031.1 RING-H2 finger protein ATL5-like [Cucumis melo var. makuwa])

HSP 1 Score: 403.3 bits (1035), Expect = 1.3e-108
Identity = 197/203 (97.04%), Postives = 200/203 (98.52%), Query Frame = 0


Query: 1   MTGSGMNLITTVIGFGMSATFIVFVCTRIICGRLRSAQSNTPNYEIESRLDLEQQPESRA 60
           MTGSGMNLITTVIGFGMSATFIVFVCTRIICGRLRSAQSNTPNYEIESRLDLEQQPESRA
Sbjct: 1   MTGSGMNLITTVIGFGMSATFIVFVCTRIICGRLRSAQSNTPNYEIESRLDLEQQPESRA 60

Query: 61  SGLEPVLIAAIPTMTFDREAFSSIEDAQCSICLGEYEEKEVLRIMPKCGHSFHLTCIDVW 120
           SGLEPVLIAAIPT  FD+EAFSS EDAQCSICLGEYEEKEVLRIMPKCGHSFHLTCIDVW
Sbjct: 61  SGLEPVLIAAIPTTKFDQEAFSSAEDAQCSICLGEYEEKEVLRIMPKCGHSFHLTCIDVW 120

Query: 121 LRKQSTCPVCRLPLQDSFRTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPNRSEGNT 180
           LRKQSTCP+CRLPLQDSFRTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPNRSEGNT
Sbjct: 121 LRKQSTCPICRLPLQDSFRTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPNRSEGNT 180

Query: 181 SNQSQLQPIPVNPAAQREMETIQ 204
           SNQSQLQPIPVNP+AQREMETIQ
Sbjct: 181 SNQSQLQPIPVNPSAQREMETIQ 203

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BLAST of CsaV3_6G005840 vs. NCBI nr
Match: XP_038876418.1 (RING-H2 finger protein ATL72-like [Benincasa hispida])

HSP 1 Score: 396.4 bits (1017), Expect = 1.5e-106
Identity = 192/203 (94.58%), Postives = 198/203 (97.54%), Query Frame = 0


Query: 1   MTGSGMNLITTVIGFGMSATFIVFVCTRIICGRLRSAQSNTPNYEIESRLDLEQQPESRA 60
           MTGSGMNLITTVIGFGMSATFIVFVCTRIICGRLRSAQS+TP+YEIESR+DLEQQPESRA
Sbjct: 1   MTGSGMNLITTVIGFGMSATFIVFVCTRIICGRLRSAQSSTPSYEIESRVDLEQQPESRA 60

Query: 61  SGLEPVLIAAIPTMTFDREAFSSIEDAQCSICLGEYEEKEVLRIMPKCGHSFHLTCIDVW 120
           SGLEPV IAAIPT  FDREAFSS+EDAQCSICLGEYEEKEVLRIMPKCGHSFHLTCIDVW
Sbjct: 61  SGLEPVFIAAIPTTKFDREAFSSVEDAQCSICLGEYEEKEVLRIMPKCGHSFHLTCIDVW 120

Query: 121 LRKQSTCPVCRLPLQDSFRTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPNRSEGNT 180
           LRKQSTCPVCRLPLQDSFRTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPNRSEGNT
Sbjct: 121 LRKQSTCPVCRLPLQDSFRTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPNRSEGNT 180

Query: 181 SNQSQLQPIPVNPAAQREMETIQ 204
           SNQS LQPIPVNP+ QREMET+Q
Sbjct: 181 SNQSHLQPIPVNPSVQREMETVQ 203

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BLAST of CsaV3_6G005840 vs. NCBI nr
Match: TYK24470.1 (RING-H2 finger protein ATL5-like [Cucumis melo var. makuwa])

HSP 1 Score: 392.9 bits (1008), Expect = 1.7e-105
Identity = 196/211 (92.89%), Postives = 199/211 (94.31%), Query Frame = 0


Query: 1   MTGSGMNLITTVIGFGMSATFIVFVCTRIICGRLRSAQSNTPNYEIESRLDLEQQ----- 60
           MTGSGMNLITTVIGFGMSATFIVFVCTRIICGRLRSAQSNTPNYEIESRLDLEQQ     
Sbjct: 1   MTGSGMNLITTVIGFGMSATFIVFVCTRIICGRLRSAQSNTPNYEIESRLDLEQQYSGVA 60

Query: 61  ---PESRASGLEPVLIAAIPTMTFDREAFSSIEDAQCSICLGEYEEKEVLRIMPKCGHSF 120
               ESRASGLEPVLIAAIPT  FD+EAFSS EDAQCSICLGEYEEKEVLRIMPKCGHSF
Sbjct: 61  KDWKESRASGLEPVLIAAIPTTKFDQEAFSSAEDAQCSICLGEYEEKEVLRIMPKCGHSF 120

Query: 121 HLTCIDVWLRKQSTCPVCRLPLQDSFRTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPG 180
           HLTCIDVWLRKQSTCP+CRLPLQDSFRTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPG
Sbjct: 121 HLTCIDVWLRKQSTCPICRLPLQDSFRTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPG 180

Query: 181 PNRSEGNTSNQSQLQPIPVNPAAQREMETIQ 204
           PNRSEGNTSNQSQLQPIPVNP+AQREMETIQ
Sbjct: 181 PNRSEGNTSNQSQLQPIPVNPSAQREMETIQ 211

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BLAST of CsaV3_6G005840 vs. NCBI nr
Match: XP_022958959.1 (RING-H2 finger protein ATL7-like [Cucurbita moschata] >KAG6574779.1 RING-H2 finger protein ATL7, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013359.1 RING-H2 finger protein ATL52, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 372.1 bits (954), Expect = 3.1e-99
Identity = 177/203 (87.19%), Postives = 193/203 (95.07%), Query Frame = 0


Query: 1   MTGSGMNLITTVIGFGMSATFIVFVCTRIICGRLRSAQSNTPNYEIESRLDLEQQPESRA 60
           MTGSGMN ITTV+GFGMSATFIVF+CTRIICGRLRS+QSN  NYEIESR+DLEQQPESRA
Sbjct: 1   MTGSGMNFITTVVGFGMSATFIVFICTRIICGRLRSSQSNRLNYEIESRVDLEQQPESRA 60

Query: 61  SGLEPVLIAAIPTMTFDREAFSSIEDAQCSICLGEYEEKEVLRIMPKCGHSFHLTCIDVW 120
           SGLEPVLIAAIPTM F+REAF+S+EDAQCSICLGEYEEKEVLR+MPKCGH FH +CIDVW
Sbjct: 61  SGLEPVLIAAIPTMKFNREAFNSVEDAQCSICLGEYEEKEVLRMMPKCGHRFHRSCIDVW 120

Query: 121 LRKQSTCPVCRLPLQDSFRTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPNRSEGNT 180
           LRKQSTCP+CRLPLQDS  TKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPNRSEGNT
Sbjct: 121 LRKQSTCPICRLPLQDSSTTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPNRSEGNT 180

Query: 181 SNQSQLQPIPVNPAAQREMETIQ 204
           SNQ+QL+ +PVNP+ QRE+ETI+
Sbjct: 181 SNQTQLESVPVNPSVQREIETIR 203

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BLAST of CsaV3_6G005840 vs. ExPASy Swiss-Prot
Match: Q9LZJ6 (RING-H2 finger protein ATL5 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=2 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.6e-16
Identity = 44/135 (32.59%), Postives = 71/135 (52.59%), Query Frame = 0


Query: 55  QPESRASGLEPVLIAAIPTMTFDREAFSSIEDAQCSICLGEYEEKEVLRIMPKCGHSFHL 114
           Q  S  S L+P ++  IP   +  +   S  + +CS+CL E+EE +  R++PKCGH FH+
Sbjct: 80  QSSSSLSPLDPTVLEKIPIFVYSVKTHESPLE-ECSVCLSEFEEDDEGRVLPKCGHVFHV 139

Query: 115 TCIDVWLRKQSTCPVCRLPLQDSFRTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPN 174
            CID W R +S+CP+CR P+Q      PA+P+T     +     +     ++       +
Sbjct: 140 DCIDTWFRSRSSCPLCRAPVQ------PAQPVTEPEPVAAVFPSVKPIEDTEAGSSSSSD 199

Query: 175 RSEGNTSNQSQLQPI 190
            SE +T + S   P+
Sbjct: 200 ESESSTPSSSSGSPV 207

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BLAST of CsaV3_6G005840 vs. ExPASy Swiss-Prot
Match: Q9SN28 (RING-H2 finger protein ATL7 OS=Arabidopsis thaliana OX=3702 GN=ATL7 PE=2 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 5.8e-16
Identity = 43/107 (40.19%), Postives = 66/107 (61.68%), Query Frame = 0


Query: 62  GLEPVLIAAIPTMTFDREAFSSIEDAQCSICLGEYEEKEVLRIMPKCGHSFHLTCIDVWL 121
           GL   +   +P + + +E+F  ++D+QCS+CLG+Y+ +E L+ MP CGH+FH+ CID+WL
Sbjct: 86  GLSKDIREMLPVVIY-KESF-IVKDSQCSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWL 145

Query: 122 RKQSTCPVCRLPL--QDSFRTKPARPMTVSRDQSFDGSEISTDHHSQ 167
              +TCP+CRL L  + S          VS  ++ +G E ST   SQ
Sbjct: 146 TSHTTCPLCRLSLIPKPSLDLSHQSTEIVSSIENSNGGEASTQPDSQ 190

[Close]

BLAST of CsaV3_6G005840 vs. ExPASy Swiss-Prot
Match: O22255 (RING-H2 finger protein ATL64 OS=Arabidopsis thaliana OX=3702 GN=ATL64 PE=2 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 7.6e-16
Identity = 35/82 (42.68%), Postives = 52/82 (63.41%), Query Frame = 0


Query: 59  RASGLEPVLIAAIPTMTF-DREAFSSIEDAQCSICLGEYEEKEVLRIMPKCGHSFHLTCI 118
           R   L+  ++  IP   +  +      E  +CS+CL E+EE++  R++PKCGHSFH+ CI
Sbjct: 77  RDQALDQAVLDKIPIFVYSSKNPPPPEEKEECSVCLSEFEEEDEGRLLPKCGHSFHVDCI 136

Query: 119 DVWLRKQSTCPVCRLPLQDSFR 140
           D W R +STCP+CR P+Q  F+
Sbjct: 137 DTWFRSRSTCPLCRAPVQPPFQ 158

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BLAST of CsaV3_6G005840 vs. ExPASy Swiss-Prot
Match: Q9SN27 (E3 ubiquitin-protein ligase ATL59 OS=Arabidopsis thaliana OX=3702 GN=ATL59 PE=1 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.3e-15
Identity = 43/107 (40.19%), Postives = 65/107 (60.75%), Query Frame = 0


Query: 62  GLEPVLIAAIPTMTFDREAFSSIEDAQCSICLGEYEEKEVLRIMPKCGHSFHLTCIDVWL 121
           GL   +   +P + + +E+F ++ D QCS+CLG+Y+ +E L+ MP CGH+FH+ CID+WL
Sbjct: 72  GLSKDIREMLPIVIY-KESF-TVNDTQCSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWL 131

Query: 122 RKQSTCPVCRLPL--QDSFRTKPARPMTVSRDQSFDGSEISTDHHSQ 167
              +TCP+CRL L  + S          VS  ++ +G E ST   SQ
Sbjct: 132 TSHTTCPLCRLSLIPKPSVDLSHQSIEIVSSIENTNGGEASTQPDSQ 176

[Close]

BLAST of CsaV3_6G005840 vs. ExPASy Swiss-Prot
Match: O64762 (RING-H2 finger protein ATL38 OS=Arabidopsis thaliana OX=3702 GN=ATL38 PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.7e-15
Identity = 44/131 (33.59%), Postives = 71/131 (54.20%), Query Frame = 0


Query: 8   LITTVIGFGMSATFIVFVCTRIICGRLRSAQSNTP--NYEIESRLDLEQQPESRASGLEP 67
           L+ T+I F +    +  VC R    +  S +S  P  + ++ESR  +     +   GL+ 
Sbjct: 16  LVITIILFAIFIVGLASVCFRWTSRQFYSQESINPFTDSDVESRTSI-----TAVRGLDE 75

Query: 68  VLIAAIPTMTFD--REAFSSIEDAQCSICLGEYEEKEVLRIMPKCGHSFHLTCIDVWLRK 127
            +I + PT  +   +E    I   +C++C+ E+E+ E LR+MP+C H FH  C+ VWL  
Sbjct: 76  AIINSFPTFLYSEVKERRIGIGGVECAVCICEFEDHETLRLMPECCHVFHADCVSVWLSD 135

Query: 128 QSTCPVCRLPL 135
            STCP+CR+ L
Sbjct: 136 HSTCPLCRVDL 141

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BLAST of CsaV3_6G005840 vs. ExPASy TrEMBL
Match: A0A0A0K9N8 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G074560 PE=4 SV=1)

HSP 1 Score: 412.9 bits (1060), Expect = 7.7e-112
Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 0


Query: 1   MTGSGMNLITTVIGFGMSATFIVFVCTRIICGRLRSAQSNTPNYEIESRLDLEQQPESRA 60
           MTGSGMNLITTVIGFGMSATFIVFVCTRIICGRLRSAQSNTPNYEIESRLDLEQQPESRA
Sbjct: 1   MTGSGMNLITTVIGFGMSATFIVFVCTRIICGRLRSAQSNTPNYEIESRLDLEQQPESRA 60

Query: 61  SGLEPVLIAAIPTMTFDREAFSSIEDAQCSICLGEYEEKEVLRIMPKCGHSFHLTCIDVW 120
           SGLEPVLIAAIPTMTFDREAFSSIEDAQCSICLGEYEEKEVLRIMPKCGHSFHLTCIDVW
Sbjct: 61  SGLEPVLIAAIPTMTFDREAFSSIEDAQCSICLGEYEEKEVLRIMPKCGHSFHLTCIDVW 120

Query: 121 LRKQSTCPVCRLPLQDSFRTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPNRSEGNT 180
           LRKQSTCPVCRLPLQDSFRTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPNRSEGNT
Sbjct: 121 LRKQSTCPVCRLPLQDSFRTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPNRSEGNT 180

Query: 181 SNQSQLQPIPVNPAAQREMETIQ 204
           SNQSQLQPIPVNPAAQREMETIQ
Sbjct: 181 SNQSQLQPIPVNPAAQREMETIQ 203

[Close]

BLAST of CsaV3_6G005840 vs. ExPASy TrEMBL
Match: A0A5A7TEE5 (RING-H2 finger protein ATL5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold122G003170 PE=4 SV=1)

HSP 1 Score: 403.3 bits (1035), Expect = 6.1e-109
Identity = 197/203 (97.04%), Postives = 200/203 (98.52%), Query Frame = 0


Query: 1   MTGSGMNLITTVIGFGMSATFIVFVCTRIICGRLRSAQSNTPNYEIESRLDLEQQPESRA 60
           MTGSGMNLITTVIGFGMSATFIVFVCTRIICGRLRSAQSNTPNYEIESRLDLEQQPESRA
Sbjct: 1   MTGSGMNLITTVIGFGMSATFIVFVCTRIICGRLRSAQSNTPNYEIESRLDLEQQPESRA 60

Query: 61  SGLEPVLIAAIPTMTFDREAFSSIEDAQCSICLGEYEEKEVLRIMPKCGHSFHLTCIDVW 120
           SGLEPVLIAAIPT  FD+EAFSS EDAQCSICLGEYEEKEVLRIMPKCGHSFHLTCIDVW
Sbjct: 61  SGLEPVLIAAIPTTKFDQEAFSSAEDAQCSICLGEYEEKEVLRIMPKCGHSFHLTCIDVW 120

Query: 121 LRKQSTCPVCRLPLQDSFRTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPNRSEGNT 180
           LRKQSTCP+CRLPLQDSFRTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPNRSEGNT
Sbjct: 121 LRKQSTCPICRLPLQDSFRTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPNRSEGNT 180

Query: 181 SNQSQLQPIPVNPAAQREMETIQ 204
           SNQSQLQPIPVNP+AQREMETIQ
Sbjct: 181 SNQSQLQPIPVNPSAQREMETIQ 203

[Close]

BLAST of CsaV3_6G005840 vs. ExPASy TrEMBL
Match: A0A1S3CBG3 (RING-H2 finger protein ATL5-like OS=Cucumis melo OX=3656 GN=LOC103499057 PE=4 SV=1)

HSP 1 Score: 403.3 bits (1035), Expect = 6.1e-109
Identity = 197/203 (97.04%), Postives = 200/203 (98.52%), Query Frame = 0


Query: 1   MTGSGMNLITTVIGFGMSATFIVFVCTRIICGRLRSAQSNTPNYEIESRLDLEQQPESRA 60
           MTGSGMNLITTVIGFGMSATFIVFVCTRIICGRLRSAQSNTPNYEIESRLDLEQQPESRA
Sbjct: 1   MTGSGMNLITTVIGFGMSATFIVFVCTRIICGRLRSAQSNTPNYEIESRLDLEQQPESRA 60

Query: 61  SGLEPVLIAAIPTMTFDREAFSSIEDAQCSICLGEYEEKEVLRIMPKCGHSFHLTCIDVW 120
           SGLEPVLIAAIPT  FD+EAFSS EDAQCSICLGEYEEKEVLRIMPKCGHSFHLTCIDVW
Sbjct: 61  SGLEPVLIAAIPTTKFDQEAFSSAEDAQCSICLGEYEEKEVLRIMPKCGHSFHLTCIDVW 120

Query: 121 LRKQSTCPVCRLPLQDSFRTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPNRSEGNT 180
           LRKQSTCP+CRLPLQDSFRTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPNRSEGNT
Sbjct: 121 LRKQSTCPICRLPLQDSFRTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPNRSEGNT 180

Query: 181 SNQSQLQPIPVNPAAQREMETIQ 204
           SNQSQLQPIPVNP+AQREMETIQ
Sbjct: 181 SNQSQLQPIPVNPSAQREMETIQ 203

[Close]

BLAST of CsaV3_6G005840 vs. ExPASy TrEMBL
Match: A0A5D3DMH5 (RING-H2 finger protein ATL5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00110 PE=4 SV=1)

HSP 1 Score: 392.9 bits (1008), Expect = 8.2e-106
Identity = 196/211 (92.89%), Postives = 199/211 (94.31%), Query Frame = 0


Query: 1   MTGSGMNLITTVIGFGMSATFIVFVCTRIICGRLRSAQSNTPNYEIESRLDLEQQ----- 60
           MTGSGMNLITTVIGFGMSATFIVFVCTRIICGRLRSAQSNTPNYEIESRLDLEQQ     
Sbjct: 1   MTGSGMNLITTVIGFGMSATFIVFVCTRIICGRLRSAQSNTPNYEIESRLDLEQQYSGVA 60

Query: 61  ---PESRASGLEPVLIAAIPTMTFDREAFSSIEDAQCSICLGEYEEKEVLRIMPKCGHSF 120
               ESRASGLEPVLIAAIPT  FD+EAFSS EDAQCSICLGEYEEKEVLRIMPKCGHSF
Sbjct: 61  KDWKESRASGLEPVLIAAIPTTKFDQEAFSSAEDAQCSICLGEYEEKEVLRIMPKCGHSF 120

Query: 121 HLTCIDVWLRKQSTCPVCRLPLQDSFRTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPG 180
           HLTCIDVWLRKQSTCP+CRLPLQDSFRTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPG
Sbjct: 121 HLTCIDVWLRKQSTCPICRLPLQDSFRTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPG 180

Query: 181 PNRSEGNTSNQSQLQPIPVNPAAQREMETIQ 204
           PNRSEGNTSNQSQLQPIPVNP+AQREMETIQ
Sbjct: 181 PNRSEGNTSNQSQLQPIPVNPSAQREMETIQ 211

[Close]

BLAST of CsaV3_6G005840 vs. ExPASy TrEMBL
Match: A0A6J1H6L8 (RING-H2 finger protein ATL7-like OS=Cucurbita moschata OX=3662 GN=LOC111460093 PE=4 SV=1)

HSP 1 Score: 372.1 bits (954), Expect = 1.5e-99
Identity = 177/203 (87.19%), Postives = 193/203 (95.07%), Query Frame = 0


Query: 1   MTGSGMNLITTVIGFGMSATFIVFVCTRIICGRLRSAQSNTPNYEIESRLDLEQQPESRA 60
           MTGSGMN ITTV+GFGMSATFIVF+CTRIICGRLRS+QSN  NYEIESR+DLEQQPESRA
Sbjct: 1   MTGSGMNFITTVVGFGMSATFIVFICTRIICGRLRSSQSNRLNYEIESRVDLEQQPESRA 60

Query: 61  SGLEPVLIAAIPTMTFDREAFSSIEDAQCSICLGEYEEKEVLRIMPKCGHSFHLTCIDVW 120
           SGLEPVLIAAIPTM F+REAF+S+EDAQCSICLGEYEEKEVLR+MPKCGH FH +CIDVW
Sbjct: 61  SGLEPVLIAAIPTMKFNREAFNSVEDAQCSICLGEYEEKEVLRMMPKCGHRFHRSCIDVW 120

Query: 121 LRKQSTCPVCRLPLQDSFRTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPNRSEGNT 180
           LRKQSTCP+CRLPLQDS  TKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPNRSEGNT
Sbjct: 121 LRKQSTCPICRLPLQDSSTTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPNRSEGNT 180

Query: 181 SNQSQLQPIPVNPAAQREMETIQ 204
           SNQ+QL+ +PVNP+ QRE+ETI+
Sbjct: 181 SNQTQLESVPVNPSVQREIETIR 203

[Close]

BLAST of CsaV3_6G005840 vs. TAIR 10
Match: AT4G33565.1 (RING/U-box superfamily protein )

HSP 1 Score: 89.0 bits (219), Expect = 4.9e-18
Identity = 35/79 (44.30%), Postives = 53/79 (67.09%), Query Frame = 0


Query: 59  RASGLEPVLIAAIPTMTFDREAFSSIEDAQCSICLGEYEEKEVLRIMPKCGHSFHLTCID 118
           R  GL P +I++I    + ++    +E   CS+CL E+EE+E LR++PKC H+FHL CID
Sbjct: 188 RTIGLNPTVISSIKVCQYSKKD-GVVEGTDCSVCLSEFEEEETLRLLPKCKHAFHLYCID 247

Query: 119 VWLRKQSTCPVCRLPLQDS 138
            WLR  + CP+CR P+ ++
Sbjct: 248 TWLRSHTNCPLCRAPIVEA 265

[Close]

BLAST of CsaV3_6G005840 vs. TAIR 10
Match: AT3G62690.1 (AtL5 )

HSP 1 Score: 87.0 bits (214), Expect = 1.9e-17
Identity = 44/135 (32.59%), Postives = 71/135 (52.59%), Query Frame = 0


Query: 55  QPESRASGLEPVLIAAIPTMTFDREAFSSIEDAQCSICLGEYEEKEVLRIMPKCGHSFHL 114
           Q  S  S L+P ++  IP   +  +   S  + +CS+CL E+EE +  R++PKCGH FH+
Sbjct: 80  QSSSSLSPLDPTVLEKIPIFVYSVKTHESPLE-ECSVCLSEFEEDDEGRVLPKCGHVFHV 139

Query: 115 TCIDVWLRKQSTCPVCRLPLQDSFRTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPN 174
            CID W R +S+CP+CR P+Q      PA+P+T     +     +     ++       +
Sbjct: 140 DCIDTWFRSRSSCPLCRAPVQ------PAQPVTEPEPVAAVFPSVKPIEDTEAGSSSSSD 199

Query: 175 RSEGNTSNQSQLQPI 190
            SE +T + S   P+
Sbjct: 200 ESESSTPSSSSGSPV 207

[Close]

BLAST of CsaV3_6G005840 vs. TAIR 10
Match: AT4G10150.1 (RING/U-box superfamily protein )

HSP 1 Score: 85.9 bits (211), Expect = 4.1e-17
Identity = 43/107 (40.19%), Postives = 66/107 (61.68%), Query Frame = 0


Query: 62  GLEPVLIAAIPTMTFDREAFSSIEDAQCSICLGEYEEKEVLRIMPKCGHSFHLTCIDVWL 121
           GL   +   +P + + +E+F  ++D+QCS+CLG+Y+ +E L+ MP CGH+FH+ CID+WL
Sbjct: 86  GLSKDIREMLPVVIY-KESF-IVKDSQCSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWL 145

Query: 122 RKQSTCPVCRLPL--QDSFRTKPARPMTVSRDQSFDGSEISTDHHSQ 167
              +TCP+CRL L  + S          VS  ++ +G E ST   SQ
Sbjct: 146 TSHTTCPLCRLSLIPKPSLDLSHQSTEIVSSIENSNGGEASTQPDSQ 190

[Close]

BLAST of CsaV3_6G005840 vs. TAIR 10
Match: AT2G47560.1 (RING/U-box superfamily protein )

HSP 1 Score: 85.5 bits (210), Expect = 5.4e-17
Identity = 35/82 (42.68%), Postives = 52/82 (63.41%), Query Frame = 0


Query: 59  RASGLEPVLIAAIPTMTF-DREAFSSIEDAQCSICLGEYEEKEVLRIMPKCGHSFHLTCI 118
           R   L+  ++  IP   +  +      E  +CS+CL E+EE++  R++PKCGHSFH+ CI
Sbjct: 77  RDQALDQAVLDKIPIFVYSSKNPPPPEEKEECSVCLSEFEEEDEGRLLPKCGHSFHVDCI 136

Query: 119 DVWLRKQSTCPVCRLPLQDSFR 140
           D W R +STCP+CR P+Q  F+
Sbjct: 137 DTWFRSRSTCPLCRAPVQPPFQ 158

[Close]

BLAST of CsaV3_6G005840 vs. TAIR 10
Match: AT4G10160.1 (RING/U-box superfamily protein )

HSP 1 Score: 84.7 bits (208), Expect = 9.2e-17
Identity = 43/107 (40.19%), Postives = 65/107 (60.75%), Query Frame = 0


Query: 62  GLEPVLIAAIPTMTFDREAFSSIEDAQCSICLGEYEEKEVLRIMPKCGHSFHLTCIDVWL 121
           GL   +   +P + + +E+F ++ D QCS+CLG+Y+ +E L+ MP CGH+FH+ CID+WL
Sbjct: 72  GLSKDIREMLPIVIY-KESF-TVNDTQCSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWL 131

Query: 122 RKQSTCPVCRLPL--QDSFRTKPARPMTVSRDQSFDGSEISTDHHSQ 167
              +TCP+CRL L  + S          VS  ++ +G E ST   SQ
Sbjct: 132 TSHTTCPLCRLSLIPKPSVDLSHQSIEIVSSIENTNGGEASTQPDSQ 176

The following BLAST results are available for this feature:

BLAST of CsaV3_6G005840 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004153610.1	1.6e-111	100.00	RING-H2 finger protein ATL5 [Cucumis sativus] >KGN46203.1 hypothetical protein C...	[more]
XP_008460164.1	1.3e-108	97.04	PREDICTED: RING-H2 finger protein ATL5-like [Cucumis melo] >KAA0040031.1 RING-H2...	[more]
XP_038876418.1	1.5e-106	94.58	RING-H2 finger protein ATL72-like [Benincasa hispida]	[more]
TYK24470.1	1.7e-105	92.89	RING-H2 finger protein ATL5-like [Cucumis melo var. makuwa]	[more]
XP_022958959.1	3.1e-99	87.19	RING-H2 finger protein ATL7-like [Cucurbita moschata] >KAG6574779.1 RING-H2 fing...	[more]

BLAST of CsaV3_6G005840 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LZJ6	2.6e-16	32.59	RING-H2 finger protein ATL5 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=2 SV=1	[more]
Q9SN28	5.8e-16	40.19	RING-H2 finger protein ATL7 OS=Arabidopsis thaliana OX=3702 GN=ATL7 PE=2 SV=1	[more]
O22255	7.6e-16	42.68	RING-H2 finger protein ATL64 OS=Arabidopsis thaliana OX=3702 GN=ATL64 PE=2 SV=1	[more]
Q9SN27	1.3e-15	40.19	E3 ubiquitin-protein ligase ATL59 OS=Arabidopsis thaliana OX=3702 GN=ATL59 PE=1 ...	[more]
O64762	1.7e-15	33.59	RING-H2 finger protein ATL38 OS=Arabidopsis thaliana OX=3702 GN=ATL38 PE=2 SV=1	[more]

BLAST of CsaV3_6G005840 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9N8	7.7e-112	100.00	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G074560 P...	[more]
A0A5A7TEE5	6.1e-109	97.04	RING-H2 finger protein ATL5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A1S3CBG3	6.1e-109	97.04	RING-H2 finger protein ATL5-like OS=Cucumis melo OX=3656 GN=LOC103499057 PE=4 SV...	[more]
A0A5D3DMH5	8.2e-106	92.89	RING-H2 finger protein ATL5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A6J1H6L8	1.5e-99	87.19	RING-H2 finger protein ATL7-like OS=Cucurbita moschata OX=3662 GN=LOC111460093 P...	[more]

BLAST of CsaV3_6G005840 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G33565.1	4.9e-18	44.30	RING/U-box superfamily protein	[more]
AT3G62690.1	1.9e-17	32.59	AtL5	[more]
AT4G10150.1	4.1e-17	40.19	RING/U-box superfamily protein	[more]
AT2G47560.1	5.4e-17	42.68	RING/U-box superfamily protein	[more]
AT4G10160.1	9.2e-17	40.19	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 89..130 e-value: 8.0E-9 score: 45.3
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 88..131 e-value: 1.3E-14 score: 54.2
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 89..131 score: 13.079398
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 49..137 e-value: 6.7E-22 score: 79.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 142..203
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 172..191
None	No IPR available	PANTHER	PTHR47035:SF4	OS02G0676500 PROTEIN	coord: 1..193
None	No IPR available	PANTHER	PTHR47035	OS11G0150450 PROTEIN	coord: 1..193
None	No IPR available	CDD	cd16461	RING-H2_EL5_like	coord: 88..131 e-value: 2.70663E-17 score: 70.4167
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 80..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G005840.1	CsaV3_6G005840.1	mRNA