CsaV3_6G004370 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G004370
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionProtein GL2-INTERACTING REPRESSOR 2
Locationchr6: 3748159 .. 3751681 (+)
RNA-Seq ExpressionCsaV3_6G004370
SyntenyCsaV3_6G004370
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCCTGCCACTGGTTAGTTTCTCAATTTTGTGATGTTTCATATGCTATTCATCATCCATCTTGTACTTTGTAGTACTTGAATTAGAAAATGTTTAATTTGTCCCTTCATGATAACTACTACTGTCAGGATAGTATGAAGTACATAACTTGTATTATCACAGCTCTACTGATTATCTATCATAATGATTGGAAGTTGGAATATGAACCAGGTTAATCATTATGTAAGTGAAGAAGGATCTATGTATGCTTACTCTTACTCTTGTGACTCTACTTGGACTTTGTGCATGTGATCGATATAGGTTTGAATTTATTGTTATGAAAACATGGAATCAAGAATCAGTTTGCGTTTGCGTAGTGCGTGCAAGTTGCAACAAGTAAAGAAGTAAAGAACTTCGGGGACATGGGCTCAAACTTGTGGCGACCTTCCTAGGATGTTAAAAGTCGACAAGTTTCCTAATAGCTACATATTTGAGTGTAGATGGTTGTTTCCCAAGTCTTTGCTCTAGGACATTTATCCCTCTAAGTGGTTGGTCCAAACTACCTTGAATTATATTAGTTCTTAATGCTGTCCTGTAATGGATTATAAAAATAAAATATAATTAATATTTCAAGTGTTTAATGGGTGATACTAAAAACTATCATGCTAGTAATATTTAGGAAATGTTTTTTTTAAAAAAAAAAAATTAATTTTCCCTCTTTCTTTCTTTTTAAGTAAGAAGTCGAGCCTTTATTGGAAAAATGAACTTATAACAAGGGCATATAAAAAAAACAAGGCTAACTACTGAACTATTCTAGAACATTTGGAGGTCTTCATTTTTTTCGTAGCCATGATTGTTCATCTTGTTCTTATTTCTACCAATTTTTATATTCACTGTCTATTTTATTCTTGGTGCTTTGTTATTGTCAATTTACTTCTAATTTAAAAAAAAAAAACAAGAAAGAAAAAGAAAAGGTCACCATGGATTATGATCTTCTTTTCCTAATCAAGTTTTTCTTTCTAAGGTTTTCTCTCTGTTATTTTGAAGCCAAACAGGGAAAAACCTAGATGAAGAACTTCTCTTCTTGGCAATAATCTTATCGCTATTGTATTGTTCTTCTAGAGGTTAAGTAGCATTTACCACTAGAAGACAAACCTATTAATTATTTTCTACCAAACAATAATGGCACCAGATTGGCTCCTATATTTGCACCAAAGGAATCCCTTCTTTTTTGTATATAATTCAAATGGTGCAACGGTTACTAAAAAATATTCATGTCATTAACCATGTGGATTTCATGGAAGTACTAAATTACAGAATTTGTTGAAACACTTTCCCTAAAATGGCTTTTTTTTTATTCTTCTACTTCCATTCATCAGTGTTCTCCCTTGGGTTTTACCTTGAATACCTTAACTCTACTGTAATTTTTGGTCAATAAATTCTGAAGAGTCATGTATTTGGCATCAAGACTTTCAGTTGGACTACCTTTAACCTCCTATTGATAAATATTCTAATTTAGATTTAGGTTTTTTTGTTTTCATTTGATACCCATTTAATTAGAAGCAATGTAGTATACAGAATTATAGAATTCCTGACTGTTTATGGTAACTACGATTTTTGATCTCTCTATTTTGTTGAAGTTTGAGATATTAATAAAACTTTACTTCTATTAATGCCCTTGCCAGAACTTCAAACATTAAGAAACCTTGATTTTAATATTGTGGATTGAAATTTATTATCTACATACACCAGTTCACTCTCATGCATACAAATACTTGGTAAGGAAGTATCCTTCTCAAATGGGACAAGTAAATAAGCCAAAAGTTCTCAAGCATAAATGCTCTTGCTAATCTTTTGAAATACATACCATATCATGTATTTCATTATATTGCCATCATTGTGATTGTTTCTTTGCTTTGCTTTTACTATTGAATATTTAAGTTTTATATTTTAAAAAAATTATATAGGCCACATCTATATTACGTATTACTATCATTGTTTTGAAATTTAATTTATTGTTTTAACGCTTTCTTTGTTAGTATCTCGGGTTCGAGAAAGACTTAAATGATAGCTTCTTTTCTTGGCAATCAATTTCATTCGTTTAGGAATGCTCTTAAAGAGGCTAACTTCCATCTACTTGTACAACTCAGGGTCTTTAATTTAAGTAATCAAAATCACCCTAGTGGTAATGGTAACAGATATTCCAACTTTTGCATTTTAGAAATTGCTATTATCACTTTATTTTCTAGCATTGTAACGGTTACTAAATTTCGACGTGACTATCCACGCAGGTTAGCATTTTATAATTAATTGTGCAGACTCTGTTTAACACTTACCTAAAGACAGCTTAACCGTGTGATTTCCCTACAGTTCCCTTTCCTCTCCCTTCATTTAAGAACTTGACAAAATTTCCAAAAAGGATACTCTACTTGCTTTTATTTACTTTTACGAAACCATATCTGCAGCATACAGATTTCCAGTTGAGCATCTATGTATACTTGTACTGATATGCATCTATGCATTAATTTTACTATTATTTCTTCTGTTTTTAATTTTGAAATTGCACAATCTTACATTTCAAATTGATTCAATTAATTATTGGCAAAGCACTAGATCAGACTTTACCTGATGAATCAGTTTACTGCAAAGCCACACTCTTTTCATATAAATTGAGGAAATTTATAGAAACCATTACTCACATCTTTTATTTCTGGTATGGGTTCAAAACCTCAGGATACCACTCAATATCTGGAGCATGCTGATGCTGCAAAGGATTGTTGTGGTGACGACCTAGAGAGCGATGTTCATAGCCCTGAGGATTTCTCCTTGAGCGTCGATCAACTCAATCAAGACTTTAACAAATCTCTTGTTCTTAAAGGTTCATCCTCAATTGAATTAAAAGATAGTTCTAGTCAGACTATGATGAAATCAGATACTGACAAGGTATACTTCTTCTCCAACTTGTAAATATCATAATCTGTGTTGGATTTTTTTCAATAAAAGAATTTTTGTGGTATTGTTTTCATCTTGTTATTTTTTTTTCCCTTGCCAGAAAGATTATGATCTCTTTCCTTTCCTCAAATAAATCTTTTAGCCTATTAAGGAAAAATCTACTCATAATTTAGGTGAATGCTAATAAATTTCCTATTTCTTGTGTGGTGGTTCTGGAAAAAAAAATTCTATAGAAGGAAACAAAAAGAAGGTATGCTGTGGAAACGGGAACGGCTGCTAATCAAAATGATGCATATTTGGATCTCAAACTGTCACCTCCAGGGGTCTACTCAAGGGGTAAATCGTCGAATGAATCGAAATCATCATCCCCAAGATCTCAAGACTCATGCATATCAGCGGAGGTTGAGTCAAATTTGAACTTGGAGGATAACCTTCGAGTTGAAAGTTCACCGTTGATTGTGATGGGTTGTACTTTTTGCCTGCTTTATGTTATGGTGACCGATGCAGATCCCAGATGCCCTAAATGCAAAAGATCTGGCTTGCTCGACGCATTTCGTGGTAATCAGGTGAAGCGATCAAGAAAGAACTGA

mRNA sequence

ATGACCCTGCCACTGGATACCACTCAATATCTGGAGCATGCTGATGCTGCAAAGGATTGTTGTGGTGACGACCTAGAGAGCGATGTTCATAGCCCTGAGGATTTCTCCTTGAGCGTCGATCAACTCAATCAAGACTTTAACAAATCTCTTGTTCTTAAAGGTTCATCCTCAATTGAATTAAAAGATAGTTCTAGTCAGACTATGATGAAATCAGATACTGACAAGAAGGAAACAAAAAGAAGGTATGCTGTGGAAACGGGAACGGCTGCTAATCAAAATGATGCATATTTGGATCTCAAACTGTCACCTCCAGGGGTCTACTCAAGGGGTAAATCGTCGAATGAATCGAAATCATCATCCCCAAGATCTCAAGACTCATGCATATCAGCGGAGGTTGAGTCAAATTTGAACTTGGAGGATAACCTTCGAGTTGAAAGTTCACCGTTGATTGTGATGGGTTGTACTTTTTGCCTGCTTTATGTTATGGTGACCGATGCAGATCCCAGATGCCCTAAATGCAAAAGATCTGGCTTGCTCGACGCATTTCGTGGTAATCAGGTGAAGCGATCAAGAAAGAACTGA

Coding sequence (CDS)

ATGACCCTGCCACTGGATACCACTCAATATCTGGAGCATGCTGATGCTGCAAAGGATTGTTGTGGTGACGACCTAGAGAGCGATGTTCATAGCCCTGAGGATTTCTCCTTGAGCGTCGATCAACTCAATCAAGACTTTAACAAATCTCTTGTTCTTAAAGGTTCATCCTCAATTGAATTAAAAGATAGTTCTAGTCAGACTATGATGAAATCAGATACTGACAAGAAGGAAACAAAAAGAAGGTATGCTGTGGAAACGGGAACGGCTGCTAATCAAAATGATGCATATTTGGATCTCAAACTGTCACCTCCAGGGGTCTACTCAAGGGGTAAATCGTCGAATGAATCGAAATCATCATCCCCAAGATCTCAAGACTCATGCATATCAGCGGAGGTTGAGTCAAATTTGAACTTGGAGGATAACCTTCGAGTTGAAAGTTCACCGTTGATTGTGATGGGTTGTACTTTTTGCCTGCTTTATGTTATGGTGACCGATGCAGATCCCAGATGCCCTAAATGCAAAAGATCTGGCTTGCTCGACGCATTTCGTGGTAATCAGGTGAAGCGATCAAGAAAGAACTGA

Protein sequence

MTLPLDTTQYLEHADAAKDCCGDDLESDVHSPEDFSLSVDQLNQDFNKSLVLKGSSSIELKDSSSQTMMKSDTDKKETKRRYAVETGTAANQNDAYLDLKLSPPGVYSRGKSSNESKSSSPRSQDSCISAEVESNLNLEDNLRVESSPLIVMGCTFCLLYVMVTDADPRCPKCKRSGLLDAFRGNQVKRSRKN*
Homology
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BLAST of CsaV3_6G004370 vs. NCBI nr
Match: XP_011656574.1 (uncharacterized protein LOC105435753 isoform X2 [Cucumis sativus] >XP_031744048.1 uncharacterized protein LOC105435753 isoform X2 [Cucumis sativus] >XP_031744049.1 uncharacterized protein LOC105435753 isoform X2 [Cucumis sativus] >KAE8646638.1 hypothetical protein Csa_005191 [Cucumis sativus])

HSP 1 Score: 376.3 bits (965), Expect = 1.6e-100
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0 

Query: 1   MTLPLDTTQYLEHADAAKDCCGDDLESDVHSPEDFSLSVDQLNQDFNKSLVLKGSSSIEL 60
           MTLPLDTTQYLEHADAAKDCCGDDLESDVHSPEDFSLSVDQLNQDFNKSLVLKGSSSIEL
Sbjct: 1   MTLPLDTTQYLEHADAAKDCCGDDLESDVHSPEDFSLSVDQLNQDFNKSLVLKGSSSIEL 60

Query: 61  KDSSSQTMMKSDTDKKETKRRYAVETGTAANQNDAYLDLKLSPPGVYSRGKSSNESKSSS 120
           KDSSSQTMMKSDTDKKETKRRYAVETGTAANQNDAYLDLKLSPPGVYSRGKSSNESKSSS
Sbjct: 61  KDSSSQTMMKSDTDKKETKRRYAVETGTAANQNDAYLDLKLSPPGVYSRGKSSNESKSSS 120

Query: 121 PRSQDSCISAEVESNLNLEDNLRVESSPLIVMGCTFCLLYVMVTDADPRCPKCKRSGLLD 180
           PRSQDSCISAEVESNLNLEDNLRVESSPLIVMGCTFCLLYVMVTDADPRCPKCKRSGLLD
Sbjct: 121 PRSQDSCISAEVESNLNLEDNLRVESSPLIVMGCTFCLLYVMVTDADPRCPKCKRSGLLD 180

Query: 181 AFRGNQVKRSRKN 194
           AFRGNQVKRSRKN
Sbjct: 181 AFRGNQVKRSRKN 193

[Close]
BLAST of CsaV3_6G004370 vs. NCBI nr
Match: XP_011656573.1 (uncharacterized protein LOC105435753 isoform X1 [Cucumis sativus])

HSP 1 Score: 368.2 bits (944), Expect = 4.3e-98
Identity = 189/190 (99.47%), Postives = 189/190 (99.47%), Query Frame = 0 

Query: 4   PLDTTQYLEHADAAKDCCGDDLESDVHSPEDFSLSVDQLNQDFNKSLVLKGSSSIELKDS 63
           P DTTQYLEHADAAKDCCGDDLESDVHSPEDFSLSVDQLNQDFNKSLVLKGSSSIELKDS
Sbjct: 5   PQDTTQYLEHADAAKDCCGDDLESDVHSPEDFSLSVDQLNQDFNKSLVLKGSSSIELKDS 64

Query: 64  SSQTMMKSDTDKKETKRRYAVETGTAANQNDAYLDLKLSPPGVYSRGKSSNESKSSSPRS 123
           SSQTMMKSDTDKKETKRRYAVETGTAANQNDAYLDLKLSPPGVYSRGKSSNESKSSSPRS
Sbjct: 65  SSQTMMKSDTDKKETKRRYAVETGTAANQNDAYLDLKLSPPGVYSRGKSSNESKSSSPRS 124

Query: 124 QDSCISAEVESNLNLEDNLRVESSPLIVMGCTFCLLYVMVTDADPRCPKCKRSGLLDAFR 183
           QDSCISAEVESNLNLEDNLRVESSPLIVMGCTFCLLYVMVTDADPRCPKCKRSGLLDAFR
Sbjct: 125 QDSCISAEVESNLNLEDNLRVESSPLIVMGCTFCLLYVMVTDADPRCPKCKRSGLLDAFR 184

Query: 184 GNQVKRSRKN 194
           GNQVKRSRKN
Sbjct: 185 GNQVKRSRKN 194

[Close]
BLAST of CsaV3_6G004370 vs. NCBI nr
Match: XP_008456616.1 (PREDICTED: uncharacterized protein LOC103496521 isoform X4 [Cucumis melo] >XP_008456617.1 PREDICTED: uncharacterized protein LOC103496521 isoform X4 [Cucumis melo])

HSP 1 Score: 359.0 bits (920), Expect = 2.6e-95
Identity = 184/193 (95.34%), Postives = 188/193 (97.41%), Query Frame = 0 

Query: 1   MTLPLDTTQYLEHADAAKDCCGDDLESDVHSPEDFSLSVDQLNQDFNKSLVLKGSSSIEL 60
           MT PLDTTQYLEHADAAKDCCGDDLES VHSPEDFSLSVDQLNQDFNKSLVLKGSSSIEL
Sbjct: 1   MTKPLDTTQYLEHADAAKDCCGDDLESGVHSPEDFSLSVDQLNQDFNKSLVLKGSSSIEL 60

Query: 61  KDSSSQTMMKSDTDKKETKRRYAVETGTAANQNDAYLDLKLSPPGVYSRGKSSNESKSSS 120
           KDSS+ TMMKS+TDKKETKRRYAVETGTAAN+NDAYLDLKLSPPGVYSRGKSSNESKSSS
Sbjct: 61  KDSSNLTMMKSETDKKETKRRYAVETGTAANENDAYLDLKLSPPGVYSRGKSSNESKSSS 120

Query: 121 PRSQDSCISAEVESNLNLEDNLRVESSPLIVMGCTFCLLYVMVTDADPRCPKCKRSGLLD 180
           P SQDSCISAEVESNLN EDNLRVESSPLIVMGCTFCLLYVMVTDADPRCPKCKRSGLLD
Sbjct: 121 PSSQDSCISAEVESNLNSEDNLRVESSPLIVMGCTFCLLYVMVTDADPRCPKCKRSGLLD 180

Query: 181 AFRGNQVKRSRKN 194
           AFRGNQ+KRSRKN
Sbjct: 181 AFRGNQLKRSRKN 193

[Close]
BLAST of CsaV3_6G004370 vs. NCBI nr
Match: XP_008456614.1 (PREDICTED: uncharacterized protein LOC103496521 isoform X3 [Cucumis melo] >XP_008456615.1 PREDICTED: uncharacterized protein LOC103496521 isoform X3 [Cucumis melo])

HSP 1 Score: 353.2 bits (905), Expect = 1.4e-93
Identity = 184/197 (93.40%), Postives = 188/197 (95.43%), Query Frame = 0 

Query: 1   MTLPL----DTTQYLEHADAAKDCCGDDLESDVHSPEDFSLSVDQLNQDFNKSLVLKGSS 60
           MT PL    DTTQYLEHADAAKDCCGDDLES VHSPEDFSLSVDQLNQDFNKSLVLKGSS
Sbjct: 1   MTKPLVNHYDTTQYLEHADAAKDCCGDDLESGVHSPEDFSLSVDQLNQDFNKSLVLKGSS 60

Query: 61  SIELKDSSSQTMMKSDTDKKETKRRYAVETGTAANQNDAYLDLKLSPPGVYSRGKSSNES 120
           SIELKDSS+ TMMKS+TDKKETKRRYAVETGTAAN+NDAYLDLKLSPPGVYSRGKSSNES
Sbjct: 61  SIELKDSSNLTMMKSETDKKETKRRYAVETGTAANENDAYLDLKLSPPGVYSRGKSSNES 120

Query: 121 KSSSPRSQDSCISAEVESNLNLEDNLRVESSPLIVMGCTFCLLYVMVTDADPRCPKCKRS 180
           KSSSP SQDSCISAEVESNLN EDNLRVESSPLIVMGCTFCLLYVMVTDADPRCPKCKRS
Sbjct: 121 KSSSPSSQDSCISAEVESNLNSEDNLRVESSPLIVMGCTFCLLYVMVTDADPRCPKCKRS 180

Query: 181 GLLDAFRGNQVKRSRKN 194
           GLLDAFRGNQ+KRSRKN
Sbjct: 181 GLLDAFRGNQLKRSRKN 197

[Close]
BLAST of CsaV3_6G004370 vs. NCBI nr
Match: XP_008456612.1 (PREDICTED: uncharacterized protein LOC103496521 isoform X1 [Cucumis melo])

HSP 1 Score: 351.3 bits (900), Expect = 5.4e-93
Identity = 180/188 (95.74%), Postives = 184/188 (97.87%), Query Frame = 0 

Query: 6   DTTQYLEHADAAKDCCGDDLESDVHSPEDFSLSVDQLNQDFNKSLVLKGSSSIELKDSSS 65
           DTTQYLEHADAAKDCCGDDLES VHSPEDFSLSVDQLNQDFNKSLVLKGSSSIELKDSS+
Sbjct: 14  DTTQYLEHADAAKDCCGDDLESGVHSPEDFSLSVDQLNQDFNKSLVLKGSSSIELKDSSN 73

Query: 66  QTMMKSDTDKKETKRRYAVETGTAANQNDAYLDLKLSPPGVYSRGKSSNESKSSSPRSQD 125
            TMMKS+TDKKETKRRYAVETGTAAN+NDAYLDLKLSPPGVYSRGKSSNESKSSSP SQD
Sbjct: 74  LTMMKSETDKKETKRRYAVETGTAANENDAYLDLKLSPPGVYSRGKSSNESKSSSPSSQD 133

Query: 126 SCISAEVESNLNLEDNLRVESSPLIVMGCTFCLLYVMVTDADPRCPKCKRSGLLDAFRGN 185
           SCISAEVESNLN EDNLRVESSPLIVMGCTFCLLYVMVTDADPRCPKCKRSGLLDAFRGN
Sbjct: 134 SCISAEVESNLNSEDNLRVESSPLIVMGCTFCLLYVMVTDADPRCPKCKRSGLLDAFRGN 193

Query: 186 QVKRSRKN 194
           Q+KRSRKN
Sbjct: 194 QLKRSRKN 201

[Close]
BLAST of CsaV3_6G004370 vs. ExPASy Swiss-Prot
Match: Q9SRN4 (Protein GL2-INTERACTING REPRESSOR 2 OS=Arabidopsis thaliana OX=3702 GN=GIR2 PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.9e-09
Identity = 41/101 (40.59%), Postives = 61/101 (60.40%), Query Frame = 0 

Query: 91  NQNDAYLDLK--LSPP----GVYSRGKSSNESKSSSPRSQDSCISAEVESNLNLEDNLRV 150
           N+N   L+L+  LSPP       S  +S N S ++SP    SC+S+E     N E+N  +
Sbjct: 5   NKNGPKLELRLNLSPPPSQASQMSLVRSPNRSNTTSP---SSCVSSET----NQEENETI 64

Query: 151 ESSPLIVMGCTFCLLYVMVTDADPRCPKCKRSGLLDAFRGN 186
            S  ++++GC  CL+YVM++D DP+CPKCK + LLD  + N
Sbjct: 65  TS--MVLVGCPRCLMYVMLSDDDPKCPKCKSTVLLDFLQEN 96

[Close]
BLAST of CsaV3_6G004370 vs. ExPASy Swiss-Prot
Match: Q9FNI1 (Protein GL2-INTERACTING REPRESSOR 1 OS=Arabidopsis thaliana OX=3702 GN=GIR1 PE=1 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.0e-09
Identity = 38/96 (39.58%), Postives = 59/96 (61.46%), Query Frame = 0 

Query: 97  LDLKLSPPGVYSRG--KSSNESKSSSPRS-QDSCISAEVESNLNLEDNLRVESSP----L 156
           L L LSPP    R   +S + S ++SP S   SC+S+E+  +   E ++R  +SP    +
Sbjct: 10  LKLNLSPPTSSQRRMVRSPSRSATTSPTSPPSSCVSSEMNQD---EPSVRYSTSPETTSM 69

Query: 157 IVMGCTFCLLYVMVTDADPRCPKCKRSGLLDAFRGN 186
           +++GC  CL+YVM+++ DP+CPKCK + LLD    N
Sbjct: 70  VLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHEN 102

[Close]
BLAST of CsaV3_6G004370 vs. ExPASy TrEMBL
Match: A0A0A0KE76 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G046290 PE=4 SV=1)

HSP 1 Score: 368.2 bits (944), Expect = 2.1e-98
Identity = 189/190 (99.47%), Postives = 189/190 (99.47%), Query Frame = 0 

Query: 4   PLDTTQYLEHADAAKDCCGDDLESDVHSPEDFSLSVDQLNQDFNKSLVLKGSSSIELKDS 63
           P DTTQYLEHADAAKDCCGDDLESDVHSPEDFSLSVDQLNQDFNKSLVLKGSSSIELKDS
Sbjct: 5   PQDTTQYLEHADAAKDCCGDDLESDVHSPEDFSLSVDQLNQDFNKSLVLKGSSSIELKDS 64

Query: 64  SSQTMMKSDTDKKETKRRYAVETGTAANQNDAYLDLKLSPPGVYSRGKSSNESKSSSPRS 123
           SSQTMMKSDTDKKETKRRYAVETGTAANQNDAYLDLKLSPPGVYSRGKSSNESKSSSPRS
Sbjct: 65  SSQTMMKSDTDKKETKRRYAVETGTAANQNDAYLDLKLSPPGVYSRGKSSNESKSSSPRS 124

Query: 124 QDSCISAEVESNLNLEDNLRVESSPLIVMGCTFCLLYVMVTDADPRCPKCKRSGLLDAFR 183
           QDSCISAEVESNLNLEDNLRVESSPLIVMGCTFCLLYVMVTDADPRCPKCKRSGLLDAFR
Sbjct: 125 QDSCISAEVESNLNLEDNLRVESSPLIVMGCTFCLLYVMVTDADPRCPKCKRSGLLDAFR 184

Query: 184 GNQVKRSRKN 194
           GNQVKRSRKN
Sbjct: 185 GNQVKRSRKN 194

[Close]
BLAST of CsaV3_6G004370 vs. ExPASy TrEMBL
Match: A0A1S3C4Y0 (uncharacterized protein LOC103496521 isoform X4 OS=Cucumis melo OX=3656 GN=LOC103496521 PE=4 SV=1)

HSP 1 Score: 359.0 bits (920), Expect = 1.3e-95
Identity = 184/193 (95.34%), Postives = 188/193 (97.41%), Query Frame = 0 

Query: 1   MTLPLDTTQYLEHADAAKDCCGDDLESDVHSPEDFSLSVDQLNQDFNKSLVLKGSSSIEL 60
           MT PLDTTQYLEHADAAKDCCGDDLES VHSPEDFSLSVDQLNQDFNKSLVLKGSSSIEL
Sbjct: 1   MTKPLDTTQYLEHADAAKDCCGDDLESGVHSPEDFSLSVDQLNQDFNKSLVLKGSSSIEL 60

Query: 61  KDSSSQTMMKSDTDKKETKRRYAVETGTAANQNDAYLDLKLSPPGVYSRGKSSNESKSSS 120
           KDSS+ TMMKS+TDKKETKRRYAVETGTAAN+NDAYLDLKLSPPGVYSRGKSSNESKSSS
Sbjct: 61  KDSSNLTMMKSETDKKETKRRYAVETGTAANENDAYLDLKLSPPGVYSRGKSSNESKSSS 120

Query: 121 PRSQDSCISAEVESNLNLEDNLRVESSPLIVMGCTFCLLYVMVTDADPRCPKCKRSGLLD 180
           P SQDSCISAEVESNLN EDNLRVESSPLIVMGCTFCLLYVMVTDADPRCPKCKRSGLLD
Sbjct: 121 PSSQDSCISAEVESNLNSEDNLRVESSPLIVMGCTFCLLYVMVTDADPRCPKCKRSGLLD 180

Query: 181 AFRGNQVKRSRKN 194
           AFRGNQ+KRSRKN
Sbjct: 181 AFRGNQLKRSRKN 193

[Close]
BLAST of CsaV3_6G004370 vs. ExPASy TrEMBL
Match: A0A1S3C4C1 (uncharacterized protein LOC103496521 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103496521 PE=4 SV=1)

HSP 1 Score: 353.2 bits (905), Expect = 6.9e-94
Identity = 184/197 (93.40%), Postives = 188/197 (95.43%), Query Frame = 0 

Query: 1   MTLPL----DTTQYLEHADAAKDCCGDDLESDVHSPEDFSLSVDQLNQDFNKSLVLKGSS 60
           MT PL    DTTQYLEHADAAKDCCGDDLES VHSPEDFSLSVDQLNQDFNKSLVLKGSS
Sbjct: 1   MTKPLVNHYDTTQYLEHADAAKDCCGDDLESGVHSPEDFSLSVDQLNQDFNKSLVLKGSS 60

Query: 61  SIELKDSSSQTMMKSDTDKKETKRRYAVETGTAANQNDAYLDLKLSPPGVYSRGKSSNES 120
           SIELKDSS+ TMMKS+TDKKETKRRYAVETGTAAN+NDAYLDLKLSPPGVYSRGKSSNES
Sbjct: 61  SIELKDSSNLTMMKSETDKKETKRRYAVETGTAANENDAYLDLKLSPPGVYSRGKSSNES 120

Query: 121 KSSSPRSQDSCISAEVESNLNLEDNLRVESSPLIVMGCTFCLLYVMVTDADPRCPKCKRS 180
           KSSSP SQDSCISAEVESNLN EDNLRVESSPLIVMGCTFCLLYVMVTDADPRCPKCKRS
Sbjct: 121 KSSSPSSQDSCISAEVESNLNSEDNLRVESSPLIVMGCTFCLLYVMVTDADPRCPKCKRS 180

Query: 181 GLLDAFRGNQVKRSRKN 194
           GLLDAFRGNQ+KRSRKN
Sbjct: 181 GLLDAFRGNQLKRSRKN 197

[Close]
BLAST of CsaV3_6G004370 vs. ExPASy TrEMBL
Match: A0A5D3CNF7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold304G001060 PE=4 SV=1)

HSP 1 Score: 351.3 bits (900), Expect = 2.6e-93
Identity = 180/188 (95.74%), Postives = 184/188 (97.87%), Query Frame = 0 

Query: 6   DTTQYLEHADAAKDCCGDDLESDVHSPEDFSLSVDQLNQDFNKSLVLKGSSSIELKDSSS 65
           DTTQYLEHADAAKDCCGDDLES VHSPEDFSLSVDQLNQDFNKSLVLKGSSSIELKDSS+
Sbjct: 7   DTTQYLEHADAAKDCCGDDLESGVHSPEDFSLSVDQLNQDFNKSLVLKGSSSIELKDSSN 66

Query: 66  QTMMKSDTDKKETKRRYAVETGTAANQNDAYLDLKLSPPGVYSRGKSSNESKSSSPRSQD 125
            TMMKS+TDKKETKRRYAVETGTAAN+NDAYLDLKLSPPGVYSRGKSSNESKSSSP SQD
Sbjct: 67  LTMMKSETDKKETKRRYAVETGTAANENDAYLDLKLSPPGVYSRGKSSNESKSSSPSSQD 126

Query: 126 SCISAEVESNLNLEDNLRVESSPLIVMGCTFCLLYVMVTDADPRCPKCKRSGLLDAFRGN 185
           SCISAEVESNLN EDNLRVESSPLIVMGCTFCLLYVMVTDADPRCPKCKRSGLLDAFRGN
Sbjct: 127 SCISAEVESNLNSEDNLRVESSPLIVMGCTFCLLYVMVTDADPRCPKCKRSGLLDAFRGN 186

Query: 186 QVKRSRKN 194
           Q+KRSRKN
Sbjct: 187 QLKRSRKN 194

[Close]
BLAST of CsaV3_6G004370 vs. ExPASy TrEMBL
Match: A0A1S3C387 (uncharacterized protein LOC103496521 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496521 PE=4 SV=1)

HSP 1 Score: 351.3 bits (900), Expect = 2.6e-93
Identity = 180/188 (95.74%), Postives = 184/188 (97.87%), Query Frame = 0 

Query: 6   DTTQYLEHADAAKDCCGDDLESDVHSPEDFSLSVDQLNQDFNKSLVLKGSSSIELKDSSS 65
           DTTQYLEHADAAKDCCGDDLES VHSPEDFSLSVDQLNQDFNKSLVLKGSSSIELKDSS+
Sbjct: 14  DTTQYLEHADAAKDCCGDDLESGVHSPEDFSLSVDQLNQDFNKSLVLKGSSSIELKDSSN 73

Query: 66  QTMMKSDTDKKETKRRYAVETGTAANQNDAYLDLKLSPPGVYSRGKSSNESKSSSPRSQD 125
            TMMKS+TDKKETKRRYAVETGTAAN+NDAYLDLKLSPPGVYSRGKSSNESKSSSP SQD
Sbjct: 74  LTMMKSETDKKETKRRYAVETGTAANENDAYLDLKLSPPGVYSRGKSSNESKSSSPSSQD 133

Query: 126 SCISAEVESNLNLEDNLRVESSPLIVMGCTFCLLYVMVTDADPRCPKCKRSGLLDAFRGN 185
           SCISAEVESNLN EDNLRVESSPLIVMGCTFCLLYVMVTDADPRCPKCKRSGLLDAFRGN
Sbjct: 134 SCISAEVESNLNSEDNLRVESSPLIVMGCTFCLLYVMVTDADPRCPKCKRSGLLDAFRGN 193

Query: 186 QVKRSRKN 194
           Q+KRSRKN
Sbjct: 194 QLKRSRKN 201

[Close]
BLAST of CsaV3_6G004370 vs. TAIR 10
Match: AT3G11600.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06270.1); Has 171 Blast hits to 171 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 171; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 63.5 bits (153), Expect = 2.1e-10
Identity = 41/101 (40.59%), Postives = 61/101 (60.40%), Query Frame = 0 

Query: 91  NQNDAYLDLK--LSPP----GVYSRGKSSNESKSSSPRSQDSCISAEVESNLNLEDNLRV 150
           N+N   L+L+  LSPP       S  +S N S ++SP    SC+S+E     N E+N  +
Sbjct: 5   NKNGPKLELRLNLSPPPSQASQMSLVRSPNRSNTTSP---SSCVSSET----NQEENETI 64

Query: 151 ESSPLIVMGCTFCLLYVMVTDADPRCPKCKRSGLLDAFRGN 186
            S  ++++GC  CL+YVM++D DP+CPKCK + LLD  + N
Sbjct: 65  TS--MVLVGCPRCLMYVMLSDDDPKCPKCKSTVLLDFLQEN 96

[Close]
BLAST of CsaV3_6G004370 vs. TAIR 10
Match: AT5G06270.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11600.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 62.8 bits (151), Expect = 3.6e-10
Identity = 38/96 (39.58%), Postives = 59/96 (61.46%), Query Frame = 0 

Query: 97  LDLKLSPPGVYSRG--KSSNESKSSSPRS-QDSCISAEVESNLNLEDNLRVESSP----L 156
           L L LSPP    R   +S + S ++SP S   SC+S+E+  +   E ++R  +SP    +
Sbjct: 10  LKLNLSPPTSSQRRMVRSPSRSATTSPTSPPSSCVSSEMNQD---EPSVRYSTSPETTSM 69

Query: 157 IVMGCTFCLLYVMVTDADPRCPKCKRSGLLDAFRGN 186
           +++GC  CL+YVM+++ DP+CPKCK + LLD    N
Sbjct: 70  VLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHEN 102

[Close]
BLAST of CsaV3_6G004370 vs. TAIR 10
Match: AT3G52561.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11600.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 45.1 bits (105), Expect = 7.7e-05
Identity = 28/77 (36.36%), Postives = 43/77 (55.84%), Query Frame = 0 

Query: 106 VYSRGKSSNESKSS-SPRSQDSCI--SAEVESNLNLEDNLRVESSPLIVMGCTFCLLYVM 165
           V + G+    S SS +  SQ+SC+  + EV+  +        E+  ++VMGC  C++YVM
Sbjct: 21  VVANGRFEGRSPSSDTSSSQNSCLTRTEEVKEEVASSWVDEEEAPEMVVMGCRSCMMYVM 80

Query: 166 VTDADPRCPKCKRSGLL 180
           V     RCPKCK + L+
Sbjct: 81  VLQERQRCPKCKCTDLI 97

The following BLAST results are available for this feature:
BLAST of CsaV3_6G004370 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011656574.11.6e-100100.00uncharacterized protein LOC105435753 isoform X2 [Cucumis sativus] >XP_031744048.... [more]
XP_011656573.14.3e-9899.47uncharacterized protein LOC105435753 isoform X1 [Cucumis sativus][more]
XP_008456616.12.6e-9595.34PREDICTED: uncharacterized protein LOC103496521 isoform X4 [Cucumis melo] >XP_00... [more]
XP_008456614.11.4e-9393.40PREDICTED: uncharacterized protein LOC103496521 isoform X3 [Cucumis melo] >XP_00... [more]
XP_008456612.15.4e-9395.74PREDICTED: uncharacterized protein LOC103496521 isoform X1 [Cucumis melo][more]
BLAST of CsaV3_6G004370 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SRN42.9e-0940.59Protein GL2-INTERACTING REPRESSOR 2 OS=Arabidopsis thaliana OX=3702 GN=GIR2 PE=1... [more]
Q9FNI15.0e-0939.58Protein GL2-INTERACTING REPRESSOR 1 OS=Arabidopsis thaliana OX=3702 GN=GIR1 PE=1... [more]
BLAST of CsaV3_6G004370 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KE762.1e-9899.47Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G046290 PE=4 SV=1[more]
A0A1S3C4Y01.3e-9595.34uncharacterized protein LOC103496521 isoform X4 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A1S3C4C16.9e-9493.40uncharacterized protein LOC103496521 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A5D3CNF72.6e-9395.74Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3C3872.6e-9395.74uncharacterized protein LOC103496521 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
BLAST of CsaV3_6G004370 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G11600.12.1e-1040.59unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response... [more]
AT5G06270.13.6e-1039.58unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT3G52561.17.7e-0536.36unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 106..128
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 61..81
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 107..128
NoneNo IPR availablePANTHERPTHR33177:SF51GB|AAF02129.1coord: 90..191
NoneNo IPR availablePANTHERPTHR33177PUTATIVE-RELATEDcoord: 90..191

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G004370.1CsaV3_6G004370.1mRNA