CsaV3_6G004320 (gene) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAGCCGACAGAGTAAAATCCATTTTAAAAACAAACCCAATTATACCAAAAACGTGTTCATTTCAAATTCTACCATTTTCTTCTTTTTCTTTTTCTTTTTTCTAAAACCCATTTCCCAAATTTCTTCCCTATCCAATCCATTCTCTTTTCTGCATGTAAAAATCCTATAAATACAAACCCACAACCTTTTCAATCCTTCCCCAACAAAACCCATTTCCTGATTCTTCATCAAAACTCTTCTAAATCCTTCCCATCAATCAAATCAAATCCCTTTCTCTCTGTTTCCCCTTCTTATGTTTCACCACACTCGGTGGACCACCATGACTCAGTCTTCGACTCACTGGACTCGGTCCGAGGACAAGCTTTTCGAGGAGGCTTTGGTGGTTGTTCCGGCCAACTTACCTGATCGGTGGCAAAGGGTCGCCGACCATGTCCCTGGTAAGTCTCCCAGGGAGGTTAAAGATCACTACGACGCTTTGGTTCACGATGTCCTTGAAATTGACTCTGGTCGAGTTGAGTTACCGAGTTATGCCGATGAATCGGCGGTGGGTTTGCCGGAATGGGACTCTTCTGGACAGATCTCTTTTGGATCCAAGGCTAAGCATGGTGGAGATAACGAGAGGAAGAAAGGAACGCCATGGACTGAAGAAGAACATAGGTATTTATTTTTCTAATATACATATCAACACTTTTGCTTCAATTTTATGCTCTCTCTGTTTCTGTTTGGCTGCTGTGAAAATGGTGGGAAAAGGGGAGGAATGAACAAACACAGAGAATTTGAACTCTAATTTGGTTTTGGGTTTTGTGTCTTATGTGTTTGGTTTCTTGTTCCATCTTCCAATTTGGGAATTCCTGAGATTTAATCACCTTTTTTTGATTTAGAATTGCTTGTTTCTTCTGTATTATTCACCCTGATTTTCAGTTTTGTAAGGGGGAGGGGGGAATTTTGAAATTCCATCTTAAGAAATTGGTGTTCCTAAATTTAGGAAGAATCTCATTAGAATGAAGAGGTTAAGTTTAGGGATGGAGTTGTTGTTCTTGATATGGTTTGTGGGATGCAACATCTTGGGATTTATTGGAAAAACAACCCGATACTGTCCCCTGGACAAGAACCGTTAACAACTCAAACCATCTGTTGGAATTGAGTTTTAGAGCAAGAATTCAACCAAGAACACGAAGATTGGAACTTATTGATTTGTTATCTTTGAGTAAGCTTGAGTGTTTAAGCTGGCTCTTGCAACAACCACTTAACCTTGTGACATTGACATTCAGAAAGTTGACTGGCTGGACTATGTTTAATATCTTAGTTAGGTAGGTTACATACATGACAACTGGTTTCATGATTTCCCCTTCTAAATTGATGAGCTTGAGTGATGTTTCGAAAACAATATCGCTGTCCCATTGTAGATTGCTGTTGAGTGTTAGCCTAAAAGCTCAAGCTAGTGTGTTGTTCTAGAGATCTGTTGTTGCAGCTGTTGCTTCCTAATGCATACCTAAAACTGAGTTCAAAGCTTGAATATAGACCAATGAGGAAAACATAAGCTAGCAAATATGAAAATGATGTTATTGTAGGGATTTTAACTCTTTACTTTATAGGTTTTGTGATGCAATAGTGTGTTTTGACATTGTTACAGGCTATTTCTCCTTGGACTGAAAAAATTCGGCAAGGGAGATTGGAGGAGCATCTCAAGGAATGTAGTGATCACAAGAACACCAACACAAGTAGCAAGTCATGCTCAGAAATACTTTCTCCGACAAACCTCCGGTAAGAAAGAAAGGAAACGATCAAGCATTCACGACATCACAACAGTCGACAACAACTCCATCCCCATGCCTATTGACCCCAATTGGATATCTCCAGCCCCCAACAATCCAACCATTCAATCAACTATGCAACAGTTGAGTCCAACAAGTCACGGGCAAGACCAAGGAGCCTCACTTGGGTTCCAAAACTACCGGTTCCCAATGTAGCTATCGACTAGATAACCCTTAGAAAACTACCACCATTACTACAATGTAAATACACCAAAAAAATCTGTAAAGACAAATGTACGTACGTGCCTGGGGTTTGGTTTCGTCGTTCTTTTGGTTGCCACAGTTTAGAGAGAACCCTGTCTGTAAGTAAATAGAGAAGAAAGGAGTTAGAAGGTAGTAGTAGTGAATGATTGTTAGAAACAGCAGTTAAAAGCTAATTAATGTAAAAGAATTAGGGAAAAACACAGTATATGAATGGAAAAACAAAATTCTTTGTTAGATTGTGACAAATCCTGCAAGCAGATTTTAGTAGCAGCAAGTTTCACTTTCATTCGTTAGATTACTGTTTGTTGGGCTGAAGATTCAGACTGATTACTCTTCTTTTATGGAATTGGGCTTTGACTTTATAAGAGTTTTTCTTTGTTCATCCTTCTTTTTTGGTCAGAGAAGAAAATGGGGAGCCTTTAATTGCGCCGCCAGTTTGGAGTTTTTACGATCTCATCTTTCTCCGTTTTCACCAATAATTGATGAAAACAGGCTTTGGCCGCCAGTTTGGAGTAGGCATAAAAATGGGAGGAAATGATTAAAGAAAGGCTCGCTCATTCACATGCATGAAGAATCTTTTTTGGTTGAAATCTTTAATGGTATACTTAGAAATCTTGCTACAAAAAACTGATTTTTTTAATGTTGGAATAACAGGAGCACATATGAAGTCATGTTTACTTCATGTAATAAATGAGATAGGTTTGTAATGAGTTTTAATTTCAAGATGTTCTTAGAGGGTCAATTTTAAAAAGTTTTAGTTTCAATTCGAAGGTTGAGTGCTTTTGTTTGTAATACAAAATTCATTCTTTTCATAATATTATTC ATGTTTCACCACACTCGGTGGACCACCATGACTCAGTCTTCGACTCACTGGACTCGGTCCGAGGACAAGCTTTTCGAGGAGGCTTTGGTGGTTGTTCCGGCCAACTTACCTGATCGGTGGCAAAGGGTCGCCGACCATGTCCCTGGTAAGTCTCCCAGGGAGGTTAAAGATCACTACGACGCTTTGGTTCACGATGTCCTTGAAATTGACTCTGGTCGAGTTGAGTTACCGAGTTATGCCGATGAATCGGCGGTGGGTTTGCCGGAATGGGACTCTTCTGGACAGATCTCTTTTGGATCCAAGGCTAAGCATGGTGGAGATAACGAGAGGAAGAAAGGAACGCCATGGACTGAAGAAGAACATAGGCTATTTCTCCTTGGACTGAAAAAATTCGGCAAGGGAGATTGGAGGAGCATCTCAAGGAATGTAGTGATCACAAGAACACCAACACAAGTAGCAAGTCATGCTCAGAAATACTTTCTCCGACAAACCTCCGGTAAGAAAGAAAGGAAACGATCAAGCATTCACGACATCACAACAGTCGACAACAACTCCATCCCCATGCCTATTGACCCCAATTGGATATCTCCAGCCCCCAACAATCCAACCATTCAATCAACTATGCAACAGTTGAGTCCAACAAGTCACGGGCAAGACCAAGGAGCCTCACTTGGGTTCCAAAACTACCGGTTCCCAATGTAG ATGTTTCACCACACTCGGTGGACCACCATGACTCAGTCTTCGACTCACTGGACTCGGTCCGAGGACAAGCTTTTCGAGGAGGCTTTGGTGGTTGTTCCGGCCAACTTACCTGATCGGTGGCAAAGGGTCGCCGACCATGTCCCTGGTAAGTCTCCCAGGGAGGTTAAAGATCACTACGACGCTTTGGTTCACGATGTCCTTGAAATTGACTCTGGTCGAGTTGAGTTACCGAGTTATGCCGATGAATCGGCGGTGGGTTTGCCGGAATGGGACTCTTCTGGACAGATCTCTTTTGGATCCAAGGCTAAGCATGGTGGAGATAACGAGAGGAAGAAAGGAACGCCATGGACTGAAGAAGAACATAGGCTATTTCTCCTTGGACTGAAAAAATTCGGCAAGGGAGATTGGAGGAGCATCTCAAGGAATGTAGTGATCACAAGAACACCAACACAAGTAGCAAGTCATGCTCAGAAATACTTTCTCCGACAAACCTCCGGTAAGAAAGAAAGGAAACGATCAAGCATTCACGACATCACAACAGTCGACAACAACTCCATCCCCATGCCTATTGACCCCAATTGGATATCTCCAGCCCCCAACAATCCAACCATTCAATCAACTATGCAACAGTTGAGTCCAACAAGTCACGGGCAAGACCAAGGAGCCTCACTTGGGTTCCAAAACTACCGGTTCCCAATGTAG MFHHTRWTTMTQSSTHWTRSEDKLFEEALVVVPANLPDRWQRVADHVPGKSPREVKDHYDALVHDVLEIDSGRVELPSYADESAVGLPEWDSSGQISFGSKAKHGGDNERKKGTPWTEEEHRLFLLGLKKFGKGDWRSISRNVVITRTPTQVASHAQKYFLRQTSGKKERKRSSIHDITTVDNNSIPMPIDPNWISPAPNNPTIQSTMQQLSPTSHGQDQGASLGFQNYRFPM* Homology
BLAST of CsaV3_6G004320 vs. NCBI nr
Match: XP_004140910.1 (transcription factor DIVARICATA [Cucumis sativus] >KGN46046.1 hypothetical protein Csa_004777 [Cucumis sativus]) HSP 1 Score: 483.0 bits (1242), Expect = 1.4e-132 Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 0
BLAST of CsaV3_6G004320 vs. NCBI nr
Match: XP_008456608.1 (PREDICTED: transcription factor DIVARICATA [Cucumis melo]) HSP 1 Score: 474.9 bits (1221), Expect = 3.9e-130 Identity = 229/233 (98.28%), Postives = 232/233 (99.57%), Query Frame = 0
BLAST of CsaV3_6G004320 vs. NCBI nr
Match: TYK11774.1 (transcription factor DIVARICATA [Cucumis melo var. makuwa]) HSP 1 Score: 459.1 bits (1180), Expect = 2.2e-125 Identity = 222/224 (99.11%), Postives = 224/224 (100.00%), Query Frame = 0
BLAST of CsaV3_6G004320 vs. NCBI nr
Match: XP_038886543.1 (transcription factor DIVARICATA [Benincasa hispida]) HSP 1 Score: 458.0 bits (1177), Expect = 4.9e-125 Identity = 221/233 (94.85%), Postives = 226/233 (97.00%), Query Frame = 0
BLAST of CsaV3_6G004320 vs. NCBI nr
Match: XP_023550938.1 (transcription factor DIVARICATA-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 430.6 bits (1106), Expect = 8.4e-117 Identity = 210/233 (90.13%), Postives = 218/233 (93.56%), Query Frame = 0
BLAST of CsaV3_6G004320 vs. ExPASy Swiss-Prot
Match: Q8S9H7 (Transcription factor DIVARICATA OS=Antirrhinum majus OX=4151 GN=DIVARICATA PE=2 SV=1) HSP 1 Score: 198.7 bits (504), Expect = 7.1e-50 Identity = 110/216 (50.93%), Postives = 139/216 (64.35%), Query Frame = 0
BLAST of CsaV3_6G004320 vs. ExPASy Swiss-Prot
Match: Q9FNN6 (Transcription factor SRM1 OS=Arabidopsis thaliana OX=3702 GN=SRM1 PE=1 SV=1) HSP 1 Score: 184.9 bits (468), Expect = 1.1e-45 Identity = 97/191 (50.79%), Postives = 121/191 (63.35%), Query Frame = 0
BLAST of CsaV3_6G004320 vs. ExPASy Swiss-Prot
Match: B8A9B2 (Transcription factor MYBS1 OS=Oryza sativa subsp. indica OX=39946 GN=MYBS1 PE=3 SV=1) HSP 1 Score: 179.5 bits (454), Expect = 4.4e-44 Identity = 105/203 (51.72%), Postives = 125/203 (61.58%), Query Frame = 0
BLAST of CsaV3_6G004320 vs. ExPASy Swiss-Prot
Match: Q8LH59 (Transcription factor MYBS1 OS=Oryza sativa subsp. japonica OX=39947 GN=MYBS1 PE=1 SV=1) HSP 1 Score: 179.5 bits (454), Expect = 4.4e-44 Identity = 105/203 (51.72%), Postives = 125/203 (61.58%), Query Frame = 0
BLAST of CsaV3_6G004320 vs. ExPASy Swiss-Prot
Match: Q9LVS0 (Transcription factor KUA1 OS=Arabidopsis thaliana OX=3702 GN=KUA1 PE=1 SV=1) HSP 1 Score: 121.3 bits (303), Expect = 1.4e-26 Identity = 60/108 (55.56%), Postives = 76/108 (70.37%), Query Frame = 0
BLAST of CsaV3_6G004320 vs. ExPASy TrEMBL
Match: A0A0A0KE73 (Syringolide-induced protein 1-3-1B OS=Cucumis sativus OX=3659 GN=Csa_6G046240 PE=4 SV=1) HSP 1 Score: 483.0 bits (1242), Expect = 6.9e-133 Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 0
BLAST of CsaV3_6G004320 vs. ExPASy TrEMBL
Match: A0A1S3C3Q6 (transcription factor DIVARICATA OS=Cucumis melo OX=3656 GN=LOC103496517 PE=4 SV=1) HSP 1 Score: 474.9 bits (1221), Expect = 1.9e-130 Identity = 229/233 (98.28%), Postives = 232/233 (99.57%), Query Frame = 0
BLAST of CsaV3_6G004320 vs. ExPASy TrEMBL
Match: A0A5D3CKS8 (Transcription factor DIVARICATA OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold304G001010 PE=4 SV=1) HSP 1 Score: 459.1 bits (1180), Expect = 1.1e-125 Identity = 222/224 (99.11%), Postives = 224/224 (100.00%), Query Frame = 0
BLAST of CsaV3_6G004320 vs. ExPASy TrEMBL
Match: A0A6J1JWG4 (transcription factor DIVARICATA-like OS=Cucurbita maxima OX=3661 GN=LOC111488967 PE=4 SV=1) HSP 1 Score: 430.6 bits (1106), Expect = 4.1e-117 Identity = 210/233 (90.13%), Postives = 218/233 (93.56%), Query Frame = 0
BLAST of CsaV3_6G004320 vs. ExPASy TrEMBL
Match: A0A6J1BWI5 (transcription factor DIVARICATA OS=Momordica charantia OX=3673 GN=LOC111006345 PE=4 SV=1) HSP 1 Score: 422.9 bits (1086), Expect = 8.5e-115 Identity = 205/233 (87.98%), Postives = 216/233 (92.70%), Query Frame = 0
BLAST of CsaV3_6G004320 vs. TAIR 10
Match: AT5G04760.1 (Duplicated homeodomain-like superfamily protein ) HSP 1 Score: 251.9 bits (642), Expect = 5.0e-67 Identity = 134/216 (62.04%), Postives = 162/216 (75.00%), Query Frame = 0
BLAST of CsaV3_6G004320 vs. TAIR 10
Match: AT5G08520.1 (Duplicated homeodomain-like superfamily protein ) HSP 1 Score: 184.9 bits (468), Expect = 7.5e-47 Identity = 97/191 (50.79%), Postives = 121/191 (63.35%), Query Frame = 0
BLAST of CsaV3_6G004320 vs. TAIR 10
Match: AT5G58900.1 (Homeodomain-like transcriptional regulator ) HSP 1 Score: 184.1 bits (466), Expect = 1.3e-46 Identity = 96/177 (54.24%), Postives = 118/177 (66.67%), Query Frame = 0
BLAST of CsaV3_6G004320 vs. TAIR 10
Match: AT3G11280.1 (Duplicated homeodomain-like superfamily protein ) HSP 1 Score: 181.4 bits (459), Expect = 8.3e-46 Identity = 91/171 (53.22%), Postives = 120/171 (70.18%), Query Frame = 0
BLAST of CsaV3_6G004320 vs. TAIR 10
Match: AT3G11280.2 (Duplicated homeodomain-like superfamily protein ) HSP 1 Score: 181.4 bits (459), Expect = 8.3e-46 Identity = 91/171 (53.22%), Postives = 120/171 (70.18%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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