CsaV3_6G001950 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G001950
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6: 1339340 .. 1339919 (-)
RNA-Seq ExpressionCsaV3_6G001950
SyntenyCsaV3_6G001950
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCCATATTCTGCCAAGCTTTGCAGAGAAGCTACGCAGCAAGGATTTATCAACAGCCGGTCACAACTTCCTCTCTATCTTTGCACAGCCCTTTGATTTCCCAGCAACTACTAGACTGGCTTTGTTGGCGACGAGATGTCTGGCTGAATTGCTGGTATGGCTTTTAGATTCGCTCCTGTTATTATTTTAAACTCGTCTTCTATGGATGGATGGGCTAAGTATTGGTGCTGTGCTGAAGCATTTTCCCTTGATTCCTAAGATGTGTGTTATGTTGTCTATTGCCCCTTCTGCCACTTATTAGGATTTTCTTGCTGTTGAAGATTGGAACATTGAGCAATGCAGTTACAGCATTTACTTTCAAACTTGGATTGCCCGGTTTCAATGTCACCGGAAATGGTATCTCTTACCTCGGAAATTATCCTTTCGGTTATCCAATACTGTTTTTGCTTGTAACTGGAGTTCATGTACAGCTTGTATTTGGTGTTCATTGCAAGTTCTCCAAGCTTACAAATTTTCTCAGGTGCAAATCCCCCAATGTCCCCACAGGCTTAAAATCATTGAGTGTAAGGCTATCTTAG

mRNA sequence

ATGATCCATATTCTGCCAAGCTTTGCAGAGAAGCTACGCAGCAAGGATTTATCAACAGCCGGTCACAACTTCCTCTCTATCTTTGCACAGCCCTTTGATTTCCCAGCAACTACTAGACTGGCTTTGTTGGCGACGAGATGTCTGGCTGAATTGCTGATTGGAACATTGAGCAATGCAGTTACAGCATTTACTTTCAAACTTGGATTGCCCGGTTTCAATGTCACCGGAAATGGTATCTCTTACCTCGGAAATTATCCTTTCGGTTATCCAATACTGTTTTTGCTTGTAACTGGAGTTCATGTACAGCTTGTATTTGGTGTTCATTGCAAGTTCTCCAAGCTTACAAATTTTCTCAGGTGCAAATCCCCCAATGTCCCCACAGGCTTAAAATCATTGAGTGTAAGGCTATCTTAG

Coding sequence (CDS)

ATGATCCATATTCTGCCAAGCTTTGCAGAGAAGCTACGCAGCAAGGATTTATCAACAGCCGGTCACAACTTCCTCTCTATCTTTGCACAGCCCTTTGATTTCCCAGCAACTACTAGACTGGCTTTGTTGGCGACGAGATGTCTGGCTGAATTGCTGATTGGAACATTGAGCAATGCAGTTACAGCATTTACTTTCAAACTTGGATTGCCCGGTTTCAATGTCACCGGAAATGGTATCTCTTACCTCGGAAATTATCCTTTCGGTTATCCAATACTGTTTTTGCTTGTAACTGGAGTTCATGTACAGCTTGTATTTGGTGTTCATTGCAAGTTCTCCAAGCTTACAAATTTTCTCAGGTGCAAATCCCCCAATGTCCCCACAGGCTTAAAATCATTGAGTGTAAGGCTATCTTAG

Protein sequence

MIHILPSFAEKLRSKDLSTAGHNFLSIFAQPFDFPATTRLALLATRCLAELLIGTLSNAVTAFTFKLGLPGFNVTGNGISYLGNYPFGYPILFLLVTGVHVQLVFGVHCKFSKLTNFLRCKSPNVPTGLKSLSVRLS*
Homology
[Close]
BLAST of CsaV3_6G001950 vs. NCBI nr
Match: KGN45801.1 (hypothetical protein Csa_005162 [Cucumis sativus])

HSP 1 Score: 275.0 bits (702), Expect = 3.5e-70
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0 

Query: 1   MIHILPSFAEKLRSKDLSTAGHNFLSIFAQPFDFPATTRLALLATRCLAELLIGTLSNAV 60
           MIHILPSFAEKLRSKDLSTAGHNFLSIFAQPFDFPATTRLALLATRCLAELLIGTLSNAV
Sbjct: 1   MIHILPSFAEKLRSKDLSTAGHNFLSIFAQPFDFPATTRLALLATRCLAELLIGTLSNAV 60

Query: 61  TAFTFKLGLPGFNVTGNGISYLGNYPFGYPILFLLVTGVHVQLVFGVHCKFSKLTNFLRC 120
           TAFTFKLGLPGFNVTGNGISYLGNYPFGYPILFLLVTGVHVQLVFGVHCKFSKLTNFLRC
Sbjct: 61  TAFTFKLGLPGFNVTGNGISYLGNYPFGYPILFLLVTGVHVQLVFGVHCKFSKLTNFLRC 120

Query: 121 KSPNVPTGLKSLSVRLS 138
           KSPNVPTGLKSLSVRLS
Sbjct: 121 KSPNVPTGLKSLSVRLS 137

[Close]
BLAST of CsaV3_6G001950 vs. ExPASy TrEMBL
Match: A0A0A0KDD4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G012260 PE=4 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 1.7e-70
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0 

Query: 1   MIHILPSFAEKLRSKDLSTAGHNFLSIFAQPFDFPATTRLALLATRCLAELLIGTLSNAV 60
           MIHILPSFAEKLRSKDLSTAGHNFLSIFAQPFDFPATTRLALLATRCLAELLIGTLSNAV
Sbjct: 1   MIHILPSFAEKLRSKDLSTAGHNFLSIFAQPFDFPATTRLALLATRCLAELLIGTLSNAV 60

Query: 61  TAFTFKLGLPGFNVTGNGISYLGNYPFGYPILFLLVTGVHVQLVFGVHCKFSKLTNFLRC 120
           TAFTFKLGLPGFNVTGNGISYLGNYPFGYPILFLLVTGVHVQLVFGVHCKFSKLTNFLRC
Sbjct: 61  TAFTFKLGLPGFNVTGNGISYLGNYPFGYPILFLLVTGVHVQLVFGVHCKFSKLTNFLRC 120

Query: 121 KSPNVPTGLKSLSVRLS 138
           KSPNVPTGLKSLSVRLS
Sbjct: 121 KSPNVPTGLKSLSVRLS 137

The following BLAST results are available for this feature:
BLAST of CsaV3_6G001950 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN45801.13.5e-70100.00hypothetical protein Csa_005162 [Cucumis sativus][more]
BLAST of CsaV3_6G001950 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G001950 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KDD41.7e-70100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G012260 PE=4 SV=1[more]
BLAST of CsaV3_6G001950 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G001950.1CsaV3_6G001950.1mRNA