CsaV3_5G040360 (gene) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCCGGATCTCAAAGCTCCAGATCTCTGCAATTCCTCTTCTTCATTTTTAGTTTTATCTTTTCCCATTCTCTTTCAGGTACATATATATCCCTTTTTCAAATTTCTCTTAATTAATTCGATTTCTCTTTTAATCTATGCTACCTAAACCCCCGCCCCCCCCCCCCCCCCCCCACCTCAATTGCTTTTAACATTTGTAGCTATCATGATTTTTCCTTACCTTTTTTCGCATTACTTTATCATTATTGATTGCTTTTCTGGTAAACATTATTCTGTTTTGTAATGATTTGGGGAATTGTCTTTTTTTAAGATACATGGCTATTTGTATTGAAATAAGCAAAAAGAATGGTGGGAGAGATGATTCAAGAATTTCATTGCAATTACTTTGAGCGTTACTTCAATATCGAAAATACCCTTTTTGCATGTGTATTGTGTAATTTTGTTTCTTGATGAAGCATTGAAATTTTGATTTAATTTTATACGTTCTTTACTTTTGTGAAAAGGGAAAAAAAAACAGAAGAAGAAAGTCGATGAATTTCAATTTGAATTTCCTTTTTTTTTTTTTTTTTTTTTTTTTGTAGACCTCAAATTCTAGTTGAATGAACGTACGAGGTTTTTAGTTTGGTTTTTCTTGTATTTCTAGTGTTGGCAAAGGAAAATTCAAGTGCTAAAGATGGTGGTAAAACTAAAAAGGACGATGCTCGGAGGAGCCCGTCGATGGGGATCAAGATACTAATCATATGTCTAGGAGTTGTGACTGTTATTATCTTTTCTGTAATTCTATTCAAGATATGGCAGAAGAAGAAGAGAGAAGAACAACATGCTCGTCTTCTCAAGCTGTTTGAAGATGATGATGAACTAGAAGTCGAGCTTGGACTTCGAGATTGA ATGTCCGGATCTCAAAGCTCCAGATCTCTGCAATTCCTCTTCTTCATTTTTAGTTTTATCTTTTCCCATTCTCTTTCAGTGTTGGCAAAGGAAAATTCAAGTGCTAAAGATGGTGGTAAAACTAAAAAGGACGATGCTCGGAGGAGCCCGTCGATGGGGATCAAGATACTAATCATATGTCTAGGAGTTGTGACTGTTATTATCTTTTCTGTAATTCTATTCAAGATATGGCAGAAGAAGAAGAGAGAAGAACAACATGCTCGTCTTCTCAAGCTGTTTGAAGATGATGATGAACTAGAAGTCGAGCTTGGACTTCGAGATTGA ATGTCCGGATCTCAAAGCTCCAGATCTCTGCAATTCCTCTTCTTCATTTTTAGTTTTATCTTTTCCCATTCTCTTTCAGTGTTGGCAAAGGAAAATTCAAGTGCTAAAGATGGTGGTAAAACTAAAAAGGACGATGCTCGGAGGAGCCCGTCGATGGGGATCAAGATACTAATCATATGTCTAGGAGTTGTGACTGTTATTATCTTTTCTGTAATTCTATTCAAGATATGGCAGAAGAAGAAGAGAGAAGAACAACATGCTCGTCTTCTCAAGCTGTTTGAAGATGATGATGAACTAGAAGTCGAGCTTGGACTTCGAGATTGA MSGSQSSRSLQFLFFIFSFIFSHSLSVLAKENSSAKDGGKTKKDDARRSPSMGIKILIICLGVVTVIIFSVILFKIWQKKKREEQHARLLKLFEDDDELEVELGLRD* Homology
BLAST of CsaV3_5G040360 vs. NCBI nr
Match: KGN52701.1 (hypothetical protein Csa_009261 [Cucumis sativus]) HSP 1 Score: 199.9 bits (507), Expect = 1.1e-47 Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0
BLAST of CsaV3_5G040360 vs. NCBI nr
Match: XP_008459655.1 (PREDICTED: uncharacterized protein LOC103498710 [Cucumis melo] >KAA0039241.1 uncharacterized protein E6C27_scaffold64G00300 [Cucumis melo var. makuwa]) HSP 1 Score: 189.1 bits (479), Expect = 2.0e-44 Identity = 100/107 (93.46%), Postives = 103/107 (96.26%), Query Frame = 0
BLAST of CsaV3_5G040360 vs. NCBI nr
Match: XP_038890666.1 (uncharacterized protein LOC120080166 [Benincasa hispida]) HSP 1 Score: 175.6 bits (444), Expect = 2.3e-40 Identity = 95/107 (88.79%), Postives = 101/107 (94.39%), Query Frame = 0
BLAST of CsaV3_5G040360 vs. NCBI nr
Match: KAG6592381.1 (hypothetical protein SDJN03_14727, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 146.0 bits (367), Expect = 1.9e-31 Identity = 85/108 (78.70%), Postives = 94/108 (87.04%), Query Frame = 0
BLAST of CsaV3_5G040360 vs. NCBI nr
Match: XP_023525282.1 (uncharacterized protein LOC111788931 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 146.0 bits (367), Expect = 1.9e-31 Identity = 85/107 (79.44%), Postives = 93/107 (86.92%), Query Frame = 0
BLAST of CsaV3_5G040360 vs. ExPASy TrEMBL
Match: A0A0A0KXZ0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G650624 PE=4 SV=1) HSP 1 Score: 199.9 bits (507), Expect = 5.4e-48 Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0
BLAST of CsaV3_5G040360 vs. ExPASy TrEMBL
Match: A0A5A7TC90 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold64G00300 PE=4 SV=1) HSP 1 Score: 189.1 bits (479), Expect = 9.5e-45 Identity = 100/107 (93.46%), Postives = 103/107 (96.26%), Query Frame = 0
BLAST of CsaV3_5G040360 vs. ExPASy TrEMBL
Match: A0A1S3CA76 (uncharacterized protein LOC103498710 OS=Cucumis melo OX=3656 GN=LOC103498710 PE=4 SV=1) HSP 1 Score: 189.1 bits (479), Expect = 9.5e-45 Identity = 100/107 (93.46%), Postives = 103/107 (96.26%), Query Frame = 0
BLAST of CsaV3_5G040360 vs. ExPASy TrEMBL
Match: A0A6J1EBZ0 (uncharacterized protein LOC111432678 OS=Cucurbita moschata OX=3662 GN=LOC111432678 PE=4 SV=1) HSP 1 Score: 146.0 bits (367), Expect = 9.3e-32 Identity = 85/108 (78.70%), Postives = 94/108 (87.04%), Query Frame = 0
BLAST of CsaV3_5G040360 vs. ExPASy TrEMBL
Match: A0A6J1ICT0 (uncharacterized protein LOC111472607 OS=Cucurbita maxima OX=3661 GN=LOC111472607 PE=4 SV=1) HSP 1 Score: 144.4 bits (363), Expect = 2.7e-31 Identity = 84/108 (77.78%), Postives = 93/108 (86.11%), Query Frame = 0
BLAST of CsaV3_5G040360 vs. TAIR 10
Match: AT1G09645.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G57765.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 81.3 bits (199), Expect = 5.4e-16 Identity = 42/80 (52.50%), Postives = 59/80 (73.75%), Query Frame = 0
BLAST of CsaV3_5G040360 vs. TAIR 10
Match: AT1G57765.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G09645.1). ) HSP 1 Score: 74.3 bits (181), Expect = 6.6e-14 Identity = 43/94 (45.74%), Postives = 58/94 (61.70%), Query Frame = 0
BLAST of CsaV3_5G040360 vs. TAIR 10
Match: AT1G57765.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G09645.1); Has 68 Blast hits to 68 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 72.4 bits (176), Expect = 2.5e-13 Identity = 48/107 (44.86%), Postives = 60/107 (56.07%), Query Frame = 0
BLAST of CsaV3_5G040360 vs. TAIR 10
Match: AT3G53490.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G02720.1); Has 70 Blast hits to 70 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 56.6 bits (135), Expect = 1.4e-08 Identity = 31/74 (41.89%), Postives = 50/74 (67.57%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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