CsaV3_5G040360 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G040360
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionTransmembrane protein
Locationchr5: 31718035 .. 31718922 (+)
RNA-Seq ExpressionCsaV3_5G040360
SyntenyCsaV3_5G040360
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCGGATCTCAAAGCTCCAGATCTCTGCAATTCCTCTTCTTCATTTTTAGTTTTATCTTTTCCCATTCTCTTTCAGGTACATATATATCCCTTTTTCAAATTTCTCTTAATTAATTCGATTTCTCTTTTAATCTATGCTACCTAAACCCCCGCCCCCCCCCCCCCCCCCCCACCTCAATTGCTTTTAACATTTGTAGCTATCATGATTTTTCCTTACCTTTTTTCGCATTACTTTATCATTATTGATTGCTTTTCTGGTAAACATTATTCTGTTTTGTAATGATTTGGGGAATTGTCTTTTTTTAAGATACATGGCTATTTGTATTGAAATAAGCAAAAAGAATGGTGGGAGAGATGATTCAAGAATTTCATTGCAATTACTTTGAGCGTTACTTCAATATCGAAAATACCCTTTTTGCATGTGTATTGTGTAATTTTGTTTCTTGATGAAGCATTGAAATTTTGATTTAATTTTATACGTTCTTTACTTTTGTGAAAAGGGAAAAAAAAACAGAAGAAGAAAGTCGATGAATTTCAATTTGAATTTCCTTTTTTTTTTTTTTTTTTTTTTTTTGTAGACCTCAAATTCTAGTTGAATGAACGTACGAGGTTTTTAGTTTGGTTTTTCTTGTATTTCTAGTGTTGGCAAAGGAAAATTCAAGTGCTAAAGATGGTGGTAAAACTAAAAAGGACGATGCTCGGAGGAGCCCGTCGATGGGGATCAAGATACTAATCATATGTCTAGGAGTTGTGACTGTTATTATCTTTTCTGTAATTCTATTCAAGATATGGCAGAAGAAGAAGAGAGAAGAACAACATGCTCGTCTTCTCAAGCTGTTTGAAGATGATGATGAACTAGAAGTCGAGCTTGGACTTCGAGATTGA

mRNA sequence

ATGTCCGGATCTCAAAGCTCCAGATCTCTGCAATTCCTCTTCTTCATTTTTAGTTTTATCTTTTCCCATTCTCTTTCAGTGTTGGCAAAGGAAAATTCAAGTGCTAAAGATGGTGGTAAAACTAAAAAGGACGATGCTCGGAGGAGCCCGTCGATGGGGATCAAGATACTAATCATATGTCTAGGAGTTGTGACTGTTATTATCTTTTCTGTAATTCTATTCAAGATATGGCAGAAGAAGAAGAGAGAAGAACAACATGCTCGTCTTCTCAAGCTGTTTGAAGATGATGATGAACTAGAAGTCGAGCTTGGACTTCGAGATTGA

Coding sequence (CDS)

ATGTCCGGATCTCAAAGCTCCAGATCTCTGCAATTCCTCTTCTTCATTTTTAGTTTTATCTTTTCCCATTCTCTTTCAGTGTTGGCAAAGGAAAATTCAAGTGCTAAAGATGGTGGTAAAACTAAAAAGGACGATGCTCGGAGGAGCCCGTCGATGGGGATCAAGATACTAATCATATGTCTAGGAGTTGTGACTGTTATTATCTTTTCTGTAATTCTATTCAAGATATGGCAGAAGAAGAAGAGAGAAGAACAACATGCTCGTCTTCTCAAGCTGTTTGAAGATGATGATGAACTAGAAGTCGAGCTTGGACTTCGAGATTGA

Protein sequence

MSGSQSSRSLQFLFFIFSFIFSHSLSVLAKENSSAKDGGKTKKDDARRSPSMGIKILIICLGVVTVIIFSVILFKIWQKKKREEQHARLLKLFEDDDELEVELGLRD*
Homology
BLAST of CsaV3_5G040360 vs. NCBI nr
Match: KGN52701.1 (hypothetical protein Csa_009261 [Cucumis sativus])

HSP 1 Score: 199.9 bits (507), Expect = 1.1e-47
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0

Query: 1   MSGSQSSRSLQFLFFIFSFIFSHSLSVLAKENSSAKDGGKTKKDDARRSPSMGIKILIIC 60
           MSGSQSSRSLQFLFFIFSFIFSHSLSVLAKENSSAKDGGKTKKDDARRSPSMGIKILIIC
Sbjct: 1   MSGSQSSRSLQFLFFIFSFIFSHSLSVLAKENSSAKDGGKTKKDDARRSPSMGIKILIIC 60

Query: 61  LGVVTVIIFSVILFKIWQKKKREEQHARLLKLFEDDDELEVELGLRD 108
           LGVVTVIIFSVILFKIWQKKKREEQHARLLKLFEDDDELEVELGLRD
Sbjct: 61  LGVVTVIIFSVILFKIWQKKKREEQHARLLKLFEDDDELEVELGLRD 107

BLAST of CsaV3_5G040360 vs. NCBI nr
Match: XP_008459655.1 (PREDICTED: uncharacterized protein LOC103498710 [Cucumis melo] >KAA0039241.1 uncharacterized protein E6C27_scaffold64G00300 [Cucumis melo var. makuwa])

HSP 1 Score: 189.1 bits (479), Expect = 2.0e-44
Identity = 100/107 (93.46%), Postives = 103/107 (96.26%), Query Frame = 0

Query: 1   MSGSQSSRSLQFLFFIFSFIFSHSLSVLAKENSSAKDGGKTKKDDARRSPSMGIKILIIC 60
           MSGSQSSRSLQFLFF+F+FIF HSLSVLA +NSSAKDGGKTKKDD RRSPSMGIKILIIC
Sbjct: 1   MSGSQSSRSLQFLFFLFNFIFLHSLSVLANDNSSAKDGGKTKKDDVRRSPSMGIKILIIC 60

Query: 61  LGVVTVIIFSVILFKIWQKKKREEQHARLLKLFEDDDELEVELGLRD 108
           LGVVTVI FSVILFKIWQKKKREEQHARLLKLFEDDDELEVELGLRD
Sbjct: 61  LGVVTVIAFSVILFKIWQKKKREEQHARLLKLFEDDDELEVELGLRD 107

BLAST of CsaV3_5G040360 vs. NCBI nr
Match: XP_038890666.1 (uncharacterized protein LOC120080166 [Benincasa hispida])

HSP 1 Score: 175.6 bits (444), Expect = 2.3e-40
Identity = 95/107 (88.79%), Postives = 101/107 (94.39%), Query Frame = 0

Query: 1   MSGSQSSRSLQFLFFIFSFIFSHSLSVLAKENSSAKDGGKTKKDDARRSPSMGIKILIIC 60
           MSGSQSSRSLQFLFF+F  +F HSLSVLA ++SSAKDGGK+KKDDARRSPSM IKI+IIC
Sbjct: 1   MSGSQSSRSLQFLFFVF-LLFLHSLSVLANDHSSAKDGGKSKKDDARRSPSMVIKIIIIC 60

Query: 61  LGVVTVIIFSVILFKIWQKKKREEQHARLLKLFEDDDELEVELGLRD 108
           LGVVTVI FSVILFKIWQKKKREEQHARLLKLFEDDDELEVELGLRD
Sbjct: 61  LGVVTVIAFSVILFKIWQKKKREEQHARLLKLFEDDDELEVELGLRD 106

BLAST of CsaV3_5G040360 vs. NCBI nr
Match: KAG6592381.1 (hypothetical protein SDJN03_14727, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 146.0 bits (367), Expect = 1.9e-31
Identity = 85/108 (78.70%), Postives = 94/108 (87.04%), Query Frame = 0

Query: 1   MSGSQSSRSLQFLFFIFSFIFSHSLSVLAKENSSAKDG-GKTKKDDARRSPSMGIKILII 60
           MS SQSSRSLQFL F+FS +  HSLSVLA E+SSA++G GK KK D  RS SMGIKI++I
Sbjct: 538 MSRSQSSRSLQFLSFLFS-LSLHSLSVLADEHSSAENGDGKAKKGDGWRSRSMGIKIVLI 597

Query: 61  CLGVVTVIIFSVILFKIWQKKKREEQHARLLKLFEDDDELEVELGLRD 108
           CLGVVTVI FSVIL KIWQ+KKREEQHARLLKLFEDDDELE+ELGLRD
Sbjct: 598 CLGVVTVIAFSVILCKIWQRKKREEQHARLLKLFEDDDELELELGLRD 644

BLAST of CsaV3_5G040360 vs. NCBI nr
Match: XP_023525282.1 (uncharacterized protein LOC111788931 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 146.0 bits (367), Expect = 1.9e-31
Identity = 85/107 (79.44%), Postives = 93/107 (86.92%), Query Frame = 0

Query: 1   MSGSQSSRSLQFLFFIFSFIFSHSLSVLAKENSSAKDGGKTKKDDARRSPSMGIKILIIC 60
           MS S+SS SLQFL F+ S +  HSLSVLA ++SSAKD GKTKK DA +SPS GIK+LIIC
Sbjct: 1   MSRSRSSISLQFLSFLLS-LSLHSLSVLAGDHSSAKD-GKTKKPDAPKSPSTGIKMLIIC 60

Query: 61  LGVVTVIIFSVILFKIWQKKKREEQHARLLKLFEDDDELEVELGLRD 108
           LGVVT I FSVILFK+WQKKKREEQHARLLKLFEDDDELEVELGLRD
Sbjct: 61  LGVVTFIAFSVILFKLWQKKKREEQHARLLKLFEDDDELEVELGLRD 105

BLAST of CsaV3_5G040360 vs. ExPASy TrEMBL
Match: A0A0A0KXZ0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G650624 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 5.4e-48
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0

Query: 1   MSGSQSSRSLQFLFFIFSFIFSHSLSVLAKENSSAKDGGKTKKDDARRSPSMGIKILIIC 60
           MSGSQSSRSLQFLFFIFSFIFSHSLSVLAKENSSAKDGGKTKKDDARRSPSMGIKILIIC
Sbjct: 1   MSGSQSSRSLQFLFFIFSFIFSHSLSVLAKENSSAKDGGKTKKDDARRSPSMGIKILIIC 60

Query: 61  LGVVTVIIFSVILFKIWQKKKREEQHARLLKLFEDDDELEVELGLRD 108
           LGVVTVIIFSVILFKIWQKKKREEQHARLLKLFEDDDELEVELGLRD
Sbjct: 61  LGVVTVIIFSVILFKIWQKKKREEQHARLLKLFEDDDELEVELGLRD 107

BLAST of CsaV3_5G040360 vs. ExPASy TrEMBL
Match: A0A5A7TC90 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold64G00300 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 9.5e-45
Identity = 100/107 (93.46%), Postives = 103/107 (96.26%), Query Frame = 0

Query: 1   MSGSQSSRSLQFLFFIFSFIFSHSLSVLAKENSSAKDGGKTKKDDARRSPSMGIKILIIC 60
           MSGSQSSRSLQFLFF+F+FIF HSLSVLA +NSSAKDGGKTKKDD RRSPSMGIKILIIC
Sbjct: 1   MSGSQSSRSLQFLFFLFNFIFLHSLSVLANDNSSAKDGGKTKKDDVRRSPSMGIKILIIC 60

Query: 61  LGVVTVIIFSVILFKIWQKKKREEQHARLLKLFEDDDELEVELGLRD 108
           LGVVTVI FSVILFKIWQKKKREEQHARLLKLFEDDDELEVELGLRD
Sbjct: 61  LGVVTVIAFSVILFKIWQKKKREEQHARLLKLFEDDDELEVELGLRD 107

BLAST of CsaV3_5G040360 vs. ExPASy TrEMBL
Match: A0A1S3CA76 (uncharacterized protein LOC103498710 OS=Cucumis melo OX=3656 GN=LOC103498710 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 9.5e-45
Identity = 100/107 (93.46%), Postives = 103/107 (96.26%), Query Frame = 0

Query: 1   MSGSQSSRSLQFLFFIFSFIFSHSLSVLAKENSSAKDGGKTKKDDARRSPSMGIKILIIC 60
           MSGSQSSRSLQFLFF+F+FIF HSLSVLA +NSSAKDGGKTKKDD RRSPSMGIKILIIC
Sbjct: 1   MSGSQSSRSLQFLFFLFNFIFLHSLSVLANDNSSAKDGGKTKKDDVRRSPSMGIKILIIC 60

Query: 61  LGVVTVIIFSVILFKIWQKKKREEQHARLLKLFEDDDELEVELGLRD 108
           LGVVTVI FSVILFKIWQKKKREEQHARLLKLFEDDDELEVELGLRD
Sbjct: 61  LGVVTVIAFSVILFKIWQKKKREEQHARLLKLFEDDDELEVELGLRD 107

BLAST of CsaV3_5G040360 vs. ExPASy TrEMBL
Match: A0A6J1EBZ0 (uncharacterized protein LOC111432678 OS=Cucurbita moschata OX=3662 GN=LOC111432678 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 9.3e-32
Identity = 85/108 (78.70%), Postives = 94/108 (87.04%), Query Frame = 0

Query: 1   MSGSQSSRSLQFLFFIFSFIFSHSLSVLAKENSSAKDG-GKTKKDDARRSPSMGIKILII 60
           MS SQSSRSLQFL F+FS +  HSLSVLA E+SSA++G GK KK D  RS SMGIKI++I
Sbjct: 1   MSRSQSSRSLQFLSFLFS-LSLHSLSVLADEHSSAENGDGKAKKGDGWRSRSMGIKIVLI 60

Query: 61  CLGVVTVIIFSVILFKIWQKKKREEQHARLLKLFEDDDELEVELGLRD 108
           CLGVVTVI FSVIL KIWQ+KKREEQHARLLKLFEDDDELE+ELGLRD
Sbjct: 61  CLGVVTVIAFSVILCKIWQRKKREEQHARLLKLFEDDDELELELGLRD 107

BLAST of CsaV3_5G040360 vs. ExPASy TrEMBL
Match: A0A6J1ICT0 (uncharacterized protein LOC111472607 OS=Cucurbita maxima OX=3661 GN=LOC111472607 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.7e-31
Identity = 84/108 (77.78%), Postives = 93/108 (86.11%), Query Frame = 0

Query: 1   MSGSQSSRSLQFLFFIFSFIFSHSLSVLAKENSSAKDG-GKTKKDDARRSPSMGIKILII 60
           MS SQSSRSLQFL F+FS +  HSLSVLA E+SSA+ G GK KK D  RS SMGIKI++I
Sbjct: 1   MSRSQSSRSLQFLSFLFS-LSLHSLSVLADEHSSAEHGDGKAKKGDGWRSRSMGIKIVLI 60

Query: 61  CLGVVTVIIFSVILFKIWQKKKREEQHARLLKLFEDDDELEVELGLRD 108
           CLGVVTV+ FSVIL KIWQ+KKREEQHARLLKLFEDDDELE+ELGLRD
Sbjct: 61  CLGVVTVLAFSVILCKIWQRKKREEQHARLLKLFEDDDELELELGLRD 107

BLAST of CsaV3_5G040360 vs. TAIR 10
Match: AT1G09645.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G57765.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 81.3 bits (199), Expect = 5.4e-16
Identity = 42/80 (52.50%), Postives = 59/80 (73.75%), Query Frame = 0

Query: 28  LAKENSSAKDGGKTKKDDARRSPSMGIKILIICLGVVTVIIFSVILFKIWQKKKREEQHA 87
           L+ ++ +   G KT+   +  S   G K++++ +G V V +FS  L+K+WQKKKR+EQ+A
Sbjct: 29  LSGDSKNTNAGVKTESHTS--SSKTGTKVILVLVGFVAVAMFSFFLYKLWQKKKRDEQYA 88

Query: 88  RLLKLFEDDDELEVELGLRD 108
           RLLKLFE+DDELEVELGLRD
Sbjct: 89  RLLKLFEEDDELEVELGLRD 106

BLAST of CsaV3_5G040360 vs. TAIR 10
Match: AT1G57765.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G09645.1). )

HSP 1 Score: 74.3 bits (181), Expect = 6.6e-14
Identity = 43/94 (45.74%), Postives = 58/94 (61.70%), Query Frame = 0

Query: 14  FFIFSFIFSHSLSVLAKENSSAKDGGKTKKDDARRSPSMGIKILIICLGVVTVIIFSVIL 73
           FF+           ++ + +S+  G K +   +  S   G K++ I LG   V   S  L
Sbjct: 26  FFLAMLYLDSVYQCISGDPNSSSTGAKAESHTS--SSKTGTKVIFILLGFGAVAGLSFFL 85

Query: 74  FKIWQKKKREEQHARLLKLFEDDDELEVELGLRD 108
           +K+WQKKKR+EQ+ARLLKLFE+DDELEVELGLRD
Sbjct: 86  YKLWQKKKRDEQYARLLKLFEEDDELEVELGLRD 117

BLAST of CsaV3_5G040360 vs. TAIR 10
Match: AT1G57765.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G09645.1); Has 68 Blast hits to 68 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 72.4 bits (176), Expect = 2.5e-13
Identity = 48/107 (44.86%), Postives = 60/107 (56.07%), Query Frame = 0

Query: 1   MSGSQSSRSLQFLFFIFSFIFSHSLSVLAKENSSAKDGGKTKKDDARRSPSMGIKILIIC 60
           +S S  + S   L    S      L +    NSS+      K +    S   G K++ I 
Sbjct: 4   ISISTITLSWSHLLLCASICLHFFLGISGDPNSSSTG---AKAESHTSSSKTGTKVIFIL 63

Query: 61  LGVVTVIIFSVILFKIWQKKKREEQHARLLKLFEDDDELEVELGLRD 108
           LG   V   S  L+K+WQKKKR+EQ+ARLLKLFE+DDELEVELGLRD
Sbjct: 64  LGFGAVAGLSFFLYKLWQKKKRDEQYARLLKLFEEDDELEVELGLRD 107

BLAST of CsaV3_5G040360 vs. TAIR 10
Match: AT3G53490.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G02720.1); Has 70 Blast hits to 70 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 56.6 bits (135), Expect = 1.4e-08
Identity = 31/74 (41.89%), Postives = 50/74 (67.57%), Query Frame = 0

Query: 34  SAKDGGKTKKDDARRSPSMGIKILIICLGVVTVIIFSVILFKIWQKKKREEQHARLLKLF 93
           S K+ G T+K++ +     GI +LI+ L +  V +  ++ +K W+KKKR+++ AR LKLF
Sbjct: 151 SNKESG-TEKEEQKGGMHPGIVVLIVVLLLGVVAVGLLVGYKYWRKKKRQQEQARFLKLF 210

Query: 94  EDDDELEVELGLRD 108
           ED D++E ELGL +
Sbjct: 211 EDGDDIEDELGLEN 223

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN52701.11.1e-47100.00hypothetical protein Csa_009261 [Cucumis sativus][more]
XP_008459655.12.0e-4493.46PREDICTED: uncharacterized protein LOC103498710 [Cucumis melo] >KAA0039241.1 unc... [more]
XP_038890666.12.3e-4088.79uncharacterized protein LOC120080166 [Benincasa hispida][more]
KAG6592381.11.9e-3178.70hypothetical protein SDJN03_14727, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023525282.11.9e-3179.44uncharacterized protein LOC111788931 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KXZ05.4e-48100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G650624 PE=4 SV=1[more]
A0A5A7TC909.5e-4593.46Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A1S3CA769.5e-4593.46uncharacterized protein LOC103498710 OS=Cucumis melo OX=3656 GN=LOC103498710 PE=... [more]
A0A6J1EBZ09.3e-3278.70uncharacterized protein LOC111432678 OS=Cucurbita moschata OX=3662 GN=LOC1114326... [more]
A0A6J1ICT02.7e-3177.78uncharacterized protein LOC111472607 OS=Cucurbita maxima OX=3661 GN=LOC111472607... [more]
Match NameE-valueIdentityDescription
AT1G09645.15.4e-1652.50unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT1G57765.26.6e-1445.74unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G57765.12.5e-1344.86unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT3G53490.11.4e-0841.89unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33780EXPRESSED PROTEINcoord: 6..107
NoneNo IPR availablePANTHERPTHR33780:SF2OS05G0419600 PROTEINcoord: 6..107

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G040360.1CsaV3_5G040360.1mRNA