CsaV3_5G036650 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_5G036650
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	F-box protein SKIP5
Location	chr5: 28839764 .. 28843657 (+)
RNA-Seq Expression	CsaV3_5G036650
Synteny	CsaV3_5G036650

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGGTTAGCATCGGGATGCATCTATGATACAAACCTTAAGTTCAATTTTACAATGTGCAATTCCACTTTGTACCATACAGATTATTAAAATTACACAGACAAAGTTCAATTTCTAAAACAAAGCCTCTGAATTTGATAAATTTGCAGTGCAAAGTGATTAACCAAGATTTGTCAAAGGATGGTGTTGGTGTAGTATTTTTTAGCTGACTCATTAAAAAAAGAAGTAACATATAAGCTGGGTTCGACCATTCAGTTACTGCCACATCATGGCCCATGTGTGGCCCGGCCCAAACAGATAAAATGGGCTTTGATAATATTGAGAAGTTCAAAGCCCAGAAGAAGGTCCTAACTTCTACGTAGCTTAGTTATATACGGATGGAAGCAAGGGAAATCCAAGTACAAAGTAAACGACAGGAACTGGAAGCTATGATTTGGTCATCTGTATAGTGAGTCGGGAGCTTCGTTGTGGGGCTATGGCCAAGGCCGATATGAGCCGAGTGGTAAAGGACCAGAGCCGGGTTGCCATAGTTTCGATGGAAGAAAACAAGCAAAGAAAGTGGAAAAGAAAAGGCACTTCATCCTCCTCGCCTTCTGTTAACAGCTTGGATGATGGTTGTCTAATGCATATTTTCAGCTTTCTTTCCCCCATACCAGGTACCTCTCTTTCAATTTCTTGTCTGAACGTCTATTCTTTCAGTTTCTAGAATCTCAAATTTAAGGGTTCTGTTGTTTATTTTGCAAATTTGGGTGGTTTGCTCTGCTGCTAAGCAGAAATAAAAATCGAAACGCTTGTCAAAAACCATGAAGGAGTGATTTTGCAATCTTTGGGGTATTTCTGGAAATGGATTGGGGAAAGGATTTTAATTGTAATTTTGGGCTTGGCGTGAATTGGGGATTGTTGTTTCAATGTATAAAGTAACTTACGTACTTGTTTCAGCATATCTATATCAAAAAGAAAAAAAAAAAAAAAAAACTTCGAAGAAATGAAATGCTTAGCTTCTTTGGGTTGGTTCTGTCGGAGTCTATCACTGAGCCTTATTGGTTTTCATTATGTGTGGTTTAATGGAATTGATTATGAAGTGAGAAGTTCTTTCCTTGGGCTTTGGATATGAATCGATTGGATATAATACATACATTGGTATGTGATACTGAGGAGTCGTTTAAAGAACTAAAAACACACGTGATGCATTTCTTTTGCTTCTTCTCTATTCTAGTGACCAAGTTTTTACTTTTAGCCTACTGAAGTTGTAATTGAGAGGATGCCGCCTGTTTATTTCCGTGGAGTTTCTGCCTTTCCTGTCACTTTTGCCATTGAGTTTGCAGATCGGTATAACACCGCCCTCGTTTGCCACAGATGGCGTTACTTGGCCTGTCATCCTAGGCTGTGGCTGCGAGTAGAACGATCTATTAAAGATTTATCTGAGCCGGGAGTTTTCCCAACAATCGAGGCGGCTGTTGCTGCTGCTAGGTAAATTCTTGCATGTTTACGATTTGTTTCTTAAGAGTGGGAATGAATAGAGTAAGTTGTTTATAGAGCCTAAATGATTCTGTTCTCTATAGGCCTGGTGACACCATACTTATTGCAACAGGTGGAGTTCATTCTGCCTCTAACATTCAAATAACAAAACCACTTTGCCTGGTATATTCCATTTCCCCCTTCTTTTAGTTGCCTGGCTGTGGAATTTTACTCTTAGGTCTTAATGTATGGTTTAAATGTTATCCAATTGGCCTGTCTCTGCAGCACTCATGTCTAGTTTGTGATTAATTCAAGTACCCTTCCAGAGGAAAAGTGTCATGTTATATATGTGGAAGGACCTGTCAATGAATAACTAGGAAAAGCATTTCTTTTCGGAAAAAAAATGTGGCTAGTTTCTCTAGAAAGGTCGCTGCTTGCTAGAATTTGGGTTTATGTTATTCATCTTTAACGAAACTAAGAAATGATTGGATCGAACAAGATAGCTACAAAATATAATTGGAGTTTTAAAAGAAGGTGGATCTGGGGTAACTAGTTAGCTATTTGGGTTCTGCTATGCAGTTTTAAAGTGAATTTCTCTGTGGCTTGGCCCTGCATTTTCAATTCAAATTGAGTACTTGTTTGAAGTGGCAATATTGTTAAGCTATTTCCCTGTACTTGCTTTTAAATCTTGGTGAAACATTCATGGTCCCTTGTGCTCAGCGTTTGGACTTTATGAGCTTTTAACTTCAAGATTTTAGCACCTTTGTATGCTTCAACTTATTCCATAATGTTGTAGGTTTTGACCTTTTTGGGGGCTTAATTTATGATAGAAGTGGTGAAAGACTCATTTCATAAGGAATTTAAGTTTCACTATTTTTCATCATTTTATCTTAAACTTACTATTTCAGATTGGTGGAGGTGAGCTTCCTGAGGAGACAACACTTTTCTGTACTCGTGGTTCGGAGAGGTACATAACCGATAGCATATAATGTAATTTGCAACGGTGTCCTATAGGGTTTTTTTTTCTCCCTCTTTAACATTTCCAAGAGATCATTTATCATCACCCATCTCGTTATTGGTGCCCTCTAATTGAATTTGTTATTTACTTATAGTGACTTCACTTGATTCATACATTCTTTCATCATGGATGTATTGCATTCTCATTCAGCAGCCAGGTCTGGAGAAGGCCTTGCATAAACTTCTTTTTTTATTTGGTTCAAATCCCATTTTGATCAAGAGAACTTTCATATATTTGTTTCATTTTGGTCACAAGGTTCAAAGGAGCCTTCCTACGTTTAGGAATTAACCGTTTTTGGTGATATAACTTTTAAAAATTGTCATTTTGGTCTTTACTAGTGTTTTGTCGCCAATATTCACTCACCCAATGGTCATCTCAGGCAACCTATGAGGTTCAATGTATTTCTATGTTAGCATGTACAACATGCTCAAATCGTGTGTGTATGTTAAAAGCAAAGTGGTTGTTTTCTTTGAGTACATAAGCTAAAATAAATAGATATTTTGAAAGTTTAAGGGCAGACATTCTAGAGTTCTCGAAAGTTAAGAGGGCCCAAAGGAAGATTTATGATTTTTAAAGGAAACTTATTATTGACTTCCTATTTCTTCTTAACATGCAGTGCTTTGGAGTTCCTGTCTACCAGTAAACTTTCCAACTTAACAGTCAAGGCAGAACTTGGTTGCTGCTTGCTTCACAGGAAGGGAAGATTGATTGTAGATGGATGTGTCCTCCAATGTGAGTCAAACCCTTTGGATTACCTATCATGCCCCATTGTTTGTACAGCAAGTCCAGATAAGTTATTGCCTTCCTCAGTGAAGGGTGGTTATACACACGGCGTTTCTGTCTCTCACACTCGTATTGAGGGTGGAGCCAAAGCTGTCCTAACGAGTGAGGACCTGACATTGCAGCATGTTCGAGTTATTTATGCTCGAACAGCTCTTTTCTTTTGGTTTGATGTTGAATACAAGTTATAATAATGCTGTTGTAATGTATTAGCAATGTGCATTTGTTACAAATTGTTAATCTTTTAGGTATGTTGTTATATTGGTGATTATTTAACTTGTATTGCGTCTCTGTTTATGCTTTTATCATAATCCCTTTCAATGTATTATGTCCTTGTTTTTCTTTTTCCCTGATCTATATTCTTTAGTTAATCTATAAATCTATTCATTAAACTTTCAAAATTAAAATTTAGTCTCTGTTATTGGTATATTGACATCTGTAAATGTTTGAGAATAAAAAGATTCGAATTTATTTGGCACATCTAAAAGTTCATTTATCTAATAAACACAAATCAACAATCAGATTTTCTATTCTAATCCTCAACTAAACTTTCACTTTAACCAAGCAATCTCGTTGGTGATATTACCAAGAGATTTTATTGTAACACAGAGAAGATTCATTTCAATTACAAACTAGTTTA

mRNA sequence

ATGGCCAAGGCCGATATGAGCCGAGTGGTAAAGGACCAGAGCCGGGTTGCCATAGTTTCGATGGAAGAAAACAAGCAAAGAAAGTGGAAAAGAAAAGGCACTTCATCCTCCTCGCCTTCTGTTAACAGCTTGGATGATGGTTGTCTAATGCATATTTTCAGCTTTCTTTCCCCCATACCAGATCGGTATAACACCGCCCTCGTTTGCCACAGATGGCGTTACTTGGCCTGTCATCCTAGGCTGTGGCTGCGAGTAGAACGATCTATTAAAGATTTATCTGAGCCGGGAGTTTTCCCAACAATCGAGGCGGCTGTTGCTGCTGCTAGGCCTGGTGACACCATACTTATTGCAACAGGTGGAGTTCATTCTGCCTCTAACATTCAAATAACAAAACCACTTTGCCTGATTGGTGGAGGTGAGCTTCCTGAGGAGACAACACTTTTCTGTACTCGTGGTTCGGAGAGTGCTTTGGAGTTCCTGTCTACCAGTAAACTTTCCAACTTAACAGTCAAGGCAGAACTTGGTTGCTGCTTGCTTCACAGGAAGGGAAGATTGATTGTAGATGGATGTGTCCTCCAATGTGAGTCAAACCCTTTGGATTACCTATCATGCCCCATTGTTTGTACAGCAAGTCCAGATAAGTTATTGCCTTCCTCAGTGAAGGGTGGTTATACACACGGCGTTTCTGTCTCTCACACTCGTATTGAGGGTGGAGCCAAAGCTGTCCTAACGAGTGAGGACCTGACATTGCAGCATGTTCGAGTTATTTATGCTCGAACAGCTCTTTTCTTTTGGTTTGATGTTGAATACAAGTTATAA

Coding sequence (CDS)

ATGGCCAAGGCCGATATGAGCCGAGTGGTAAAGGACCAGAGCCGGGTTGCCATAGTTTCGATGGAAGAAAACAAGCAAAGAAAGTGGAAAAGAAAAGGCACTTCATCCTCCTCGCCTTCTGTTAACAGCTTGGATGATGGTTGTCTAATGCATATTTTCAGCTTTCTTTCCCCCATACCAGATCGGTATAACACCGCCCTCGTTTGCCACAGATGGCGTTACTTGGCCTGTCATCCTAGGCTGTGGCTGCGAGTAGAACGATCTATTAAAGATTTATCTGAGCCGGGAGTTTTCCCAACAATCGAGGCGGCTGTTGCTGCTGCTAGGCCTGGTGACACCATACTTATTGCAACAGGTGGAGTTCATTCTGCCTCTAACATTCAAATAACAAAACCACTTTGCCTGATTGGTGGAGGTGAGCTTCCTGAGGAGACAACACTTTTCTGTACTCGTGGTTCGGAGAGTGCTTTGGAGTTCCTGTCTACCAGTAAACTTTCCAACTTAACAGTCAAGGCAGAACTTGGTTGCTGCTTGCTTCACAGGAAGGGAAGATTGATTGTAGATGGATGTGTCCTCCAATGTGAGTCAAACCCTTTGGATTACCTATCATGCCCCATTGTTTGTACAGCAAGTCCAGATAAGTTATTGCCTTCCTCAGTGAAGGGTGGTTATACACACGGCGTTTCTGTCTCTCACACTCGTATTGAGGGTGGAGCCAAAGCTGTCCTAACGAGTGAGGACCTGACATTGCAGCATGTTCGAGTTATTTATGCTCGAACAGCTCTTTTCTTTTGGTTTGATGTTGAATACAAGTTATAA

Protein sequence

MAKADMSRVVKDQSRVAIVSMEENKQRKWKRKGTSSSSPSVNSLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLACHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLIGGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRLIVDGCVLQCESNPLDYLSCPIVCTASPDKLLPSSVKGGYTHGVSVSHTRIEGGAKAVLTSEDLTLQHVRVIYARTALFFWFDVEYKL*

Homology

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BLAST of CsaV3_5G036650 vs. NCBI nr
Match: XP_004142419.1 (F-box protein SKIP5 isoform X1 [Cucumis sativus] >KGN52308.1 hypothetical protein Csa_008966 [Cucumis sativus])

HSP 1 Score: 547.7 bits (1410), Expect = 5.5e-152
Identity = 272/272 (100.00%), Postives = 272/272 (100.00%), Query Frame = 0


Query: 1   MAKADMSRVVKDQSRVAIVSMEENKQRKWKRKGTSSSSPSVNSLDDGCLMHIFSFLSPIP 60
           MAKADMSRVVKDQSRVAIVSMEENKQRKWKRKGTSSSSPSVNSLDDGCLMHIFSFLSPIP
Sbjct: 1   MAKADMSRVVKDQSRVAIVSMEENKQRKWKRKGTSSSSPSVNSLDDGCLMHIFSFLSPIP 60

Query: 61  DRYNTALVCHRWRYLACHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGG 120
           DRYNTALVCHRWRYLACHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGG
Sbjct: 61  DRYNTALVCHRWRYLACHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGG 120

Query: 121 VHSASNIQITKPLCLIGGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLH 180
           VHSASNIQITKPLCLIGGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLH
Sbjct: 121 VHSASNIQITKPLCLIGGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLH 180

Query: 181 RKGRLIVDGCVLQCESNPLDYLSCPIVCTASPDKLLPSSVKGGYTHGVSVSHTRIEGGAK 240
           RKGRLIVDGCVLQCESNPLDYLSCPIVCTASPDKLLPSSVKGGYTHGVSVSHTRIEGGAK
Sbjct: 181 RKGRLIVDGCVLQCESNPLDYLSCPIVCTASPDKLLPSSVKGGYTHGVSVSHTRIEGGAK 240

Query: 241 AVLTSEDLTLQHVRVIYARTALFFWFDVEYKL 273
           AVLTSEDLTLQHVRVIYARTALFFWFDVEYKL
Sbjct: 241 AVLTSEDLTLQHVRVIYARTALFFWFDVEYKL 272

[Close]

BLAST of CsaV3_5G036650 vs. NCBI nr
Match: XP_008446937.1 (PREDICTED: F-box protein SKIP5 [Cucumis melo] >KAA0034751.1 F-box protein SKIP5 [Cucumis melo var. makuwa] >TYK09305.1 F-box protein SKIP5 [Cucumis melo var. makuwa])

HSP 1 Score: 544.3 bits (1401), Expect = 6.1e-151
Identity = 270/272 (99.26%), Postives = 271/272 (99.63%), Query Frame = 0


Query: 1   MAKADMSRVVKDQSRVAIVSMEENKQRKWKRKGTSSSSPSVNSLDDGCLMHIFSFLSPIP 60
           MAKADMSRVVKDQSRVAIVSMEENKQRKWKRKGTSSSSPSVNSLDDGCLMHIFSFLSPIP
Sbjct: 1   MAKADMSRVVKDQSRVAIVSMEENKQRKWKRKGTSSSSPSVNSLDDGCLMHIFSFLSPIP 60

Query: 61  DRYNTALVCHRWRYLACHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGG 120
           DRYNTALVCHRWRYLACHPRLWLRVER+IKDLSEPGVFPTIEAAVAAARPGDTILIATGG
Sbjct: 61  DRYNTALVCHRWRYLACHPRLWLRVERTIKDLSEPGVFPTIEAAVAAARPGDTILIATGG 120

Query: 121 VHSASNIQITKPLCLIGGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLH 180
           VHSASNIQITKPLCLIGGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLH
Sbjct: 121 VHSASNIQITKPLCLIGGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLH 180

Query: 181 RKGRLIVDGCVLQCESNPLDYLSCPIVCTASPDKLLPSSVKGGYTHGVSVSHTRIEGGAK 240
           RKGRLIVDGCVLQCESNPLDYLSCPIVCTASPDKLLPSSVKGGYTHGVSVSHTRIEGGAK
Sbjct: 181 RKGRLIVDGCVLQCESNPLDYLSCPIVCTASPDKLLPSSVKGGYTHGVSVSHTRIEGGAK 240

Query: 241 AVLTSEDLTLQHVRVIYARTALFFWFDVEYKL 273
           AVLTSEDLTLQHVRVIYARTAL FWFDVEYKL
Sbjct: 241 AVLTSEDLTLQHVRVIYARTALLFWFDVEYKL 272

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BLAST of CsaV3_5G036650 vs. NCBI nr
Match: XP_038889674.1 (F-box protein SKIP5 [Benincasa hispida])

HSP 1 Score: 520.0 bits (1338), Expect = 1.2e-143
Identity = 254/267 (95.13%), Postives = 262/267 (98.13%), Query Frame = 0


Query: 6   MSRVVKDQSRVAIVSMEENKQRKWKRKGTSSSSPSVNSLDDGCLMHIFSFLSPIPDRYNT 65
           MSRVV+DQSRVAIVSMEE+KQRKWKRKGTS+SSPS+N+LDDGCLMHIFSFLSP+PDRYNT
Sbjct: 1   MSRVVEDQSRVAIVSMEESKQRKWKRKGTSTSSPSINNLDDGCLMHIFSFLSPMPDRYNT 60

Query: 66  ALVCHRWRYLACHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSAS 125
           ALVCHRWRYLACHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSAS
Sbjct: 61  ALVCHRWRYLACHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSAS 120

Query: 126 NIQITKPLCLIGGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRL 185
           NIQITKPLCLIGGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRL
Sbjct: 121 NIQITKPLCLIGGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRL 180

Query: 186 IVDGCVLQCESNPLDYLSCPIVCTASPDKLLPSSVKGGYTHGVSVSHTRIEGGAKAVLTS 245
           I+DGCVLQCESNPLDYLSCPIVCTA PDKLLPSSV  GYTHGVSVSHTRIEGGAKAVLT 
Sbjct: 181 IIDGCVLQCESNPLDYLSCPIVCTACPDKLLPSSVSRGYTHGVSVSHTRIEGGAKAVLTG 240

Query: 246 EDLTLQHVRVIYARTALFFWFDVEYKL 273
           +DL LQHVRVIYARTALFFWFDVEYKL
Sbjct: 241 DDLALQHVRVIYARTALFFWFDVEYKL 267

[Close]

BLAST of CsaV3_5G036650 vs. NCBI nr
Match: XP_022139176.1 (F-box protein SKIP5 [Momordica charantia])

HSP 1 Score: 481.5 bits (1238), Expect = 4.9e-132
Identity = 238/256 (92.97%), Postives = 245/256 (95.70%), Query Frame = 0


Query: 19  VSMEENKQRKWKRKGT--SSSSPSVNSLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLA 78
           VS++E KQRKWKRKGT  SSSS  +N+LDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLA
Sbjct: 8   VSVQEIKQRKWKRKGTSCSSSSARINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLA 67

Query: 79  CHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLI 138
           CHPRLWLRVERSIKDLSE GVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLI
Sbjct: 68  CHPRLWLRVERSIKDLSESGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLI 127

Query: 139 GGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRLIVDGCVLQCES 198
           GGGELPEETTLFCTRGSESALEFL TSKLSNLTVKAELGCCLLHRKGRLI+DGCVLQCES
Sbjct: 128 GGGELPEETTLFCTRGSESALEFLCTSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCES 187

Query: 199 NPLDYLSCPIVCTASPDKLLPSSVKGGYTHGVSVSHTRIEGGAKAVLTSEDLTLQHVRVI 258
           NPLDYLSCPIVC+A+PDKLLPSSVKGGYT GVSVS TRIEGGAKAVLTSEDL LQHVRVI
Sbjct: 188 NPLDYLSCPIVCSANPDKLLPSSVKGGYTDGVSVSQTRIEGGAKAVLTSEDLALQHVRVI 247

Query: 259 YARTALFFWFDVEYKL 273
           YARTALFFWFDVEY L
Sbjct: 248 YARTALFFWFDVEYNL 263

[Close]

BLAST of CsaV3_5G036650 vs. NCBI nr
Match: XP_022966937.1 (F-box protein SKIP5 isoform X1 [Cucurbita maxima])

HSP 1 Score: 476.5 bits (1225), Expect = 1.6e-130
Identity = 231/253 (91.30%), Postives = 241/253 (95.26%), Query Frame = 0


Query: 20  SMEENKQRKWKRKGTSSSSPSVNSLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLACHP 79
           +ME+NKQRKWKRKGT SSS  +N+LDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLACHP
Sbjct: 6   TMEDNKQRKWKRKGTPSSSARINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLACHP 65

Query: 80  RLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLIGGG 139
           RLWLRVERSIKDLSE GVFPT+EAAVAAARPGDTILIATGGVHS SNIQITKPLCLIGGG
Sbjct: 66  RLWLRVERSIKDLSESGVFPTVEAAVAAARPGDTILIATGGVHSVSNIQITKPLCLIGGG 125

Query: 140 ELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRLIVDGCVLQCESNPL 199
           ELPEETTLFC+RGSESALEFL TSKLSNLTVKAELGCCLLHRKGRLI+DGCVLQCESNPL
Sbjct: 126 ELPEETTLFCSRGSESALEFLCTSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCESNPL 185

Query: 200 DYLSCPIVCTASPDKLLPSSVKGGYTHGVSVSHTRIEGGAKAVLTSEDLTLQHVRVIYAR 259
           DYLSCPIVCTASPDKL  SSVKGGY  GVSVS TRIEGGAKA+LTSEDL L+HVRVIYAR
Sbjct: 186 DYLSCPIVCTASPDKLSSSSVKGGYADGVSVSQTRIEGGAKAILTSEDLALRHVRVIYAR 245

Query: 260 TALFFWFDVEYKL 273
           TALFFWFDVE+KL
Sbjct: 246 TALFFWFDVEHKL 258

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BLAST of CsaV3_5G036650 vs. ExPASy Swiss-Prot
Match: Q94FT2 (F-box protein SKIP5 OS=Arabidopsis thaliana OX=3702 GN=SKIP5 PE=1 SV=1)

HSP 1 Score: 347.8 bits (891), Expect = 1.1e-94
Identity = 171/255 (67.06%), Postives = 202/255 (79.22%), Query Frame = 0


Query: 26  QRKWKRKGTSSSSPSVNSLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLACHPRLWLRV 85
           + K K++    S  S+N+LDDGCLMHI SFLSPIPDRYNTALVCHRWRYLACHPRLWLRV
Sbjct: 20  ESKMKKRMKPYSLTSLNNLDDGCLMHILSFLSPIPDRYNTALVCHRWRYLACHPRLWLRV 79

Query: 86  ERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLIGGGELPEET 145
           +R +KDLS+PGVF  IE+AV+AARPGDTILI  GG +  SNIQI KPLCL+GGGE+P+ET
Sbjct: 80  DRFVKDLSQPGVFLNIESAVSAARPGDTILIVAGGNYRVSNIQIKKPLCLVGGGEIPDET 139

Query: 146 TLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRLIVDGCVLQCESNPLDYLSCP 205
           TL C RGS+SALE LST KL+NLTVKAELGCCLLHR GRL +DGCVLQCE+NPLD+LSCP
Sbjct: 140 TLVCARGSDSALELLSTCKLANLTVKAELGCCLLHRSGRLTIDGCVLQCETNPLDHLSCP 199

Query: 206 IVCTASPDKL--------LPSSVKGGY-THGVSVSHTRIEGGAKAVLTSEDLTLQHVRVI 265
           IV TA  + +        +  +V G    + V+V  TRIEGGAKAV T  DL LQ VRV+
Sbjct: 200 IVSTAGDEDIENILSHVEVKETVTGKIKANSVTVLQTRIEGGAKAVSTRGDLVLQRVRVM 259

Query: 266 YARTALFFWFDVEYK 272
           Y++  L+FWFDV+Y+
Sbjct: 260 YSKAYLYFWFDVDYE 274

[Close]

BLAST of CsaV3_5G036650 vs. ExPASy TrEMBL
Match: A0A0A0KRR7 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G623720 PE=4 SV=1)

HSP 1 Score: 547.7 bits (1410), Expect = 2.7e-152
Identity = 272/272 (100.00%), Postives = 272/272 (100.00%), Query Frame = 0


Query: 1   MAKADMSRVVKDQSRVAIVSMEENKQRKWKRKGTSSSSPSVNSLDDGCLMHIFSFLSPIP 60
           MAKADMSRVVKDQSRVAIVSMEENKQRKWKRKGTSSSSPSVNSLDDGCLMHIFSFLSPIP
Sbjct: 1   MAKADMSRVVKDQSRVAIVSMEENKQRKWKRKGTSSSSPSVNSLDDGCLMHIFSFLSPIP 60

Query: 61  DRYNTALVCHRWRYLACHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGG 120
           DRYNTALVCHRWRYLACHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGG
Sbjct: 61  DRYNTALVCHRWRYLACHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGG 120

Query: 121 VHSASNIQITKPLCLIGGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLH 180
           VHSASNIQITKPLCLIGGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLH
Sbjct: 121 VHSASNIQITKPLCLIGGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLH 180

Query: 181 RKGRLIVDGCVLQCESNPLDYLSCPIVCTASPDKLLPSSVKGGYTHGVSVSHTRIEGGAK 240
           RKGRLIVDGCVLQCESNPLDYLSCPIVCTASPDKLLPSSVKGGYTHGVSVSHTRIEGGAK
Sbjct: 181 RKGRLIVDGCVLQCESNPLDYLSCPIVCTASPDKLLPSSVKGGYTHGVSVSHTRIEGGAK 240

Query: 241 AVLTSEDLTLQHVRVIYARTALFFWFDVEYKL 273
           AVLTSEDLTLQHVRVIYARTALFFWFDVEYKL
Sbjct: 241 AVLTSEDLTLQHVRVIYARTALFFWFDVEYKL 272

[Close]

BLAST of CsaV3_5G036650 vs. ExPASy TrEMBL
Match: A0A5A7SZI1 (F-box protein SKIP5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G003020 PE=4 SV=1)

HSP 1 Score: 544.3 bits (1401), Expect = 3.0e-151
Identity = 270/272 (99.26%), Postives = 271/272 (99.63%), Query Frame = 0


Query: 1   MAKADMSRVVKDQSRVAIVSMEENKQRKWKRKGTSSSSPSVNSLDDGCLMHIFSFLSPIP 60
           MAKADMSRVVKDQSRVAIVSMEENKQRKWKRKGTSSSSPSVNSLDDGCLMHIFSFLSPIP
Sbjct: 1   MAKADMSRVVKDQSRVAIVSMEENKQRKWKRKGTSSSSPSVNSLDDGCLMHIFSFLSPIP 60

Query: 61  DRYNTALVCHRWRYLACHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGG 120
           DRYNTALVCHRWRYLACHPRLWLRVER+IKDLSEPGVFPTIEAAVAAARPGDTILIATGG
Sbjct: 61  DRYNTALVCHRWRYLACHPRLWLRVERTIKDLSEPGVFPTIEAAVAAARPGDTILIATGG 120

Query: 121 VHSASNIQITKPLCLIGGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLH 180
           VHSASNIQITKPLCLIGGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLH
Sbjct: 121 VHSASNIQITKPLCLIGGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLH 180

Query: 181 RKGRLIVDGCVLQCESNPLDYLSCPIVCTASPDKLLPSSVKGGYTHGVSVSHTRIEGGAK 240
           RKGRLIVDGCVLQCESNPLDYLSCPIVCTASPDKLLPSSVKGGYTHGVSVSHTRIEGGAK
Sbjct: 181 RKGRLIVDGCVLQCESNPLDYLSCPIVCTASPDKLLPSSVKGGYTHGVSVSHTRIEGGAK 240

Query: 241 AVLTSEDLTLQHVRVIYARTALFFWFDVEYKL 273
           AVLTSEDLTLQHVRVIYARTAL FWFDVEYKL
Sbjct: 241 AVLTSEDLTLQHVRVIYARTALLFWFDVEYKL 272

[Close]

BLAST of CsaV3_5G036650 vs. ExPASy TrEMBL
Match: A0A1S3BG99 (F-box protein SKIP5 OS=Cucumis melo OX=3656 GN=LOC103489501 PE=4 SV=1)

HSP 1 Score: 544.3 bits (1401), Expect = 3.0e-151
Identity = 270/272 (99.26%), Postives = 271/272 (99.63%), Query Frame = 0


Query: 1   MAKADMSRVVKDQSRVAIVSMEENKQRKWKRKGTSSSSPSVNSLDDGCLMHIFSFLSPIP 60
           MAKADMSRVVKDQSRVAIVSMEENKQRKWKRKGTSSSSPSVNSLDDGCLMHIFSFLSPIP
Sbjct: 1   MAKADMSRVVKDQSRVAIVSMEENKQRKWKRKGTSSSSPSVNSLDDGCLMHIFSFLSPIP 60

Query: 61  DRYNTALVCHRWRYLACHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGG 120
           DRYNTALVCHRWRYLACHPRLWLRVER+IKDLSEPGVFPTIEAAVAAARPGDTILIATGG
Sbjct: 61  DRYNTALVCHRWRYLACHPRLWLRVERTIKDLSEPGVFPTIEAAVAAARPGDTILIATGG 120

Query: 121 VHSASNIQITKPLCLIGGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLH 180
           VHSASNIQITKPLCLIGGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLH
Sbjct: 121 VHSASNIQITKPLCLIGGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLH 180

Query: 181 RKGRLIVDGCVLQCESNPLDYLSCPIVCTASPDKLLPSSVKGGYTHGVSVSHTRIEGGAK 240
           RKGRLIVDGCVLQCESNPLDYLSCPIVCTASPDKLLPSSVKGGYTHGVSVSHTRIEGGAK
Sbjct: 181 RKGRLIVDGCVLQCESNPLDYLSCPIVCTASPDKLLPSSVKGGYTHGVSVSHTRIEGGAK 240

Query: 241 AVLTSEDLTLQHVRVIYARTALFFWFDVEYKL 273
           AVLTSEDLTLQHVRVIYARTAL FWFDVEYKL
Sbjct: 241 AVLTSEDLTLQHVRVIYARTALLFWFDVEYKL 272

[Close]

BLAST of CsaV3_5G036650 vs. ExPASy TrEMBL
Match: A0A6J1CBW5 (F-box protein SKIP5 OS=Momordica charantia OX=3673 GN=LOC111010147 PE=4 SV=1)

HSP 1 Score: 481.5 bits (1238), Expect = 2.4e-132
Identity = 238/256 (92.97%), Postives = 245/256 (95.70%), Query Frame = 0


Query: 19  VSMEENKQRKWKRKGT--SSSSPSVNSLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLA 78
           VS++E KQRKWKRKGT  SSSS  +N+LDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLA
Sbjct: 8   VSVQEIKQRKWKRKGTSCSSSSARINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLA 67

Query: 79  CHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLI 138
           CHPRLWLRVERSIKDLSE GVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLI
Sbjct: 68  CHPRLWLRVERSIKDLSESGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLI 127

Query: 139 GGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRLIVDGCVLQCES 198
           GGGELPEETTLFCTRGSESALEFL TSKLSNLTVKAELGCCLLHRKGRLI+DGCVLQCES
Sbjct: 128 GGGELPEETTLFCTRGSESALEFLCTSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCES 187

Query: 199 NPLDYLSCPIVCTASPDKLLPSSVKGGYTHGVSVSHTRIEGGAKAVLTSEDLTLQHVRVI 258
           NPLDYLSCPIVC+A+PDKLLPSSVKGGYT GVSVS TRIEGGAKAVLTSEDL LQHVRVI
Sbjct: 188 NPLDYLSCPIVCSANPDKLLPSSVKGGYTDGVSVSQTRIEGGAKAVLTSEDLALQHVRVI 247

Query: 259 YARTALFFWFDVEYKL 273
           YARTALFFWFDVEY L
Sbjct: 248 YARTALFFWFDVEYNL 263

[Close]

BLAST of CsaV3_5G036650 vs. ExPASy TrEMBL
Match: A0A6J1HPC3 (F-box protein SKIP5 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111466500 PE=4 SV=1)

HSP 1 Score: 476.5 bits (1225), Expect = 7.6e-131
Identity = 231/253 (91.30%), Postives = 241/253 (95.26%), Query Frame = 0


Query: 20  SMEENKQRKWKRKGTSSSSPSVNSLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLACHP 79
           +ME+NKQRKWKRKGT SSS  +N+LDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLACHP
Sbjct: 6   TMEDNKQRKWKRKGTPSSSARINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLACHP 65

Query: 80  RLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLIGGG 139
           RLWLRVERSIKDLSE GVFPT+EAAVAAARPGDTILIATGGVHS SNIQITKPLCLIGGG
Sbjct: 66  RLWLRVERSIKDLSESGVFPTVEAAVAAARPGDTILIATGGVHSVSNIQITKPLCLIGGG 125

Query: 140 ELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRLIVDGCVLQCESNPL 199
           ELPEETTLFC+RGSESALEFL TSKLSNLTVKAELGCCLLHRKGRLI+DGCVLQCESNPL
Sbjct: 126 ELPEETTLFCSRGSESALEFLCTSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCESNPL 185

Query: 200 DYLSCPIVCTASPDKLLPSSVKGGYTHGVSVSHTRIEGGAKAVLTSEDLTLQHVRVIYAR 259
           DYLSCPIVCTASPDKL  SSVKGGY  GVSVS TRIEGGAKA+LTSEDL L+HVRVIYAR
Sbjct: 186 DYLSCPIVCTASPDKLSSSSVKGGYADGVSVSQTRIEGGAKAILTSEDLALRHVRVIYAR 245

Query: 260 TALFFWFDVEYKL 273
           TALFFWFDVE+KL
Sbjct: 246 TALFFWFDVEHKL 258

[Close]

BLAST of CsaV3_5G036650 vs. TAIR 10
Match: AT3G54480.1 (SKP1/ASK-interacting protein 5 )

HSP 1 Score: 347.8 bits (891), Expect = 7.8e-96
Identity = 171/255 (67.06%), Postives = 202/255 (79.22%), Query Frame = 0


Query: 26  QRKWKRKGTSSSSPSVNSLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLACHPRLWLRV 85
           + K K++    S  S+N+LDDGCLMHI SFLSPIPDRYNTALVCHRWRYLACHPRLWLRV
Sbjct: 20  ESKMKKRMKPYSLTSLNNLDDGCLMHILSFLSPIPDRYNTALVCHRWRYLACHPRLWLRV 79

Query: 86  ERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLIGGGELPEET 145
           +R +KDLS+PGVF  IE+AV+AARPGDTILI  GG +  SNIQI KPLCL+GGGE+P+ET
Sbjct: 80  DRFVKDLSQPGVFLNIESAVSAARPGDTILIVAGGNYRVSNIQIKKPLCLVGGGEIPDET 139

Query: 146 TLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRLIVDGCVLQCESNPLDYLSCP 205
           TL C RGS+SALE LST KL+NLTVKAELGCCLLHR GRL +DGCVLQCE+NPLD+LSCP
Sbjct: 140 TLVCARGSDSALELLSTCKLANLTVKAELGCCLLHRSGRLTIDGCVLQCETNPLDHLSCP 199

Query: 206 IVCTASPDKL--------LPSSVKGGY-THGVSVSHTRIEGGAKAVLTSEDLTLQHVRVI 265
           IV TA  + +        +  +V G    + V+V  TRIEGGAKAV T  DL LQ VRV+
Sbjct: 200 IVSTAGDEDIENILSHVEVKETVTGKIKANSVTVLQTRIEGGAKAVSTRGDLVLQRVRVM 259

Query: 266 YARTALFFWFDVEYK 272
           Y++  L+FWFDV+Y+
Sbjct: 260 YSKAYLYFWFDVDYE 274

[Close]

BLAST of CsaV3_5G036650 vs. TAIR 10
Match: AT3G54480.2 (SKP1/ASK-interacting protein 5 )

HSP 1 Score: 135.6 bits (340), Expect = 6.1e-32
Identity = 62/84 (73.81%), Postives = 72/84 (85.71%), Query Frame = 0


Query: 26  QRKWKRKGTSSSSPSVNSLDDGCLMHIFSFLSPIPDRYNTALVCHRWRYLACHPRLWLRV 85
           + K K++    S  S+N+LDDGCLMHI SFLSPIPDRYNTALVCHRWRYLACHPRLWLRV
Sbjct: 20  ESKMKKRMKPYSLTSLNNLDDGCLMHILSFLSPIPDRYNTALVCHRWRYLACHPRLWLRV 79

Query: 86  ERSIKDLSEPGVFPTIEAAVAAAR 110
           +R +KDLS+PGVF  IE+AV+AAR
Sbjct: 80  DRFVKDLSQPGVFLNIESAVSAAR 103

The following BLAST results are available for this feature:

BLAST of CsaV3_5G036650 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004142419.1	5.5e-152	100.00	F-box protein SKIP5 isoform X1 [Cucumis sativus] >KGN52308.1 hypothetical protei...	[more]
XP_008446937.1	6.1e-151	99.26	PREDICTED: F-box protein SKIP5 [Cucumis melo] >KAA0034751.1 F-box protein SKIP5 ...	[more]
XP_038889674.1	1.2e-143	95.13	F-box protein SKIP5 [Benincasa hispida]	[more]
XP_022139176.1	4.9e-132	92.97	F-box protein SKIP5 [Momordica charantia]	[more]
XP_022966937.1	1.6e-130	91.30	F-box protein SKIP5 isoform X1 [Cucurbita maxima]	[more]

BLAST of CsaV3_5G036650 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94FT2	1.1e-94	67.06	F-box protein SKIP5 OS=Arabidopsis thaliana OX=3702 GN=SKIP5 PE=1 SV=1	[more]

BLAST of CsaV3_5G036650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRR7	2.7e-152	100.00	F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G623720 PE=4 ...	[more]
A0A5A7SZI1	3.0e-151	99.26	F-box protein SKIP5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G...	[more]
A0A1S3BG99	3.0e-151	99.26	F-box protein SKIP5 OS=Cucumis melo OX=3656 GN=LOC103489501 PE=4 SV=1	[more]
A0A6J1CBW5	2.4e-132	92.97	F-box protein SKIP5 OS=Momordica charantia OX=3673 GN=LOC111010147 PE=4 SV=1	[more]
A0A6J1HPC3	7.6e-131	91.30	F-box protein SKIP5 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111466500 PE=4 ...	[more]

BLAST of CsaV3_5G036650 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G54480.1	7.8e-96	67.06	SKP1/ASK-interacting protein 5	[more]
AT3G54480.2	6.1e-32	73.81	SKP1/ASK-interacting protein 5	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	SMART	SM00256	fbox_2	coord: 44..85 e-value: 0.0065 score: 25.7
IPR001810	F-box domain	PFAM	PF12937	F-box-like	coord: 48..85 e-value: 7.5E-9 score: 35.3
None	No IPR available	GENE3D	1.20.1280.50		coord: 42..82 e-value: 4.2E-12 score: 47.7
None	No IPR available	PANTHER	PTHR14695:SF4	PROTEIN NESSUN DORMA	coord: 90..271
None	No IPR available	PANTHER	PTHR14695:SF4	PROTEIN NESSUN DORMA	coord: 33..88
IPR045140	SHC SH2 domain-binding protein 1-like	PANTHER	PTHR14695	SHC SH2-DOMAIN BINDING PROTEIN 1-RELATED	coord: 90..271 coord: 33..88
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 28..95
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	51126	Pectin lyase-like	coord: 96..231

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G036650.1	CsaV3_5G036650.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding